ClCG04G010920 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G010920
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr04: 25883727 .. 25884026 (-)
RNA-Seq Expression	ClCG04G010920
Synteny	ClCG04G010920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACTTCCCAAAAAAACAAGAACTCAATTGGATTTCTTCTTTCTCTGAAACCCATCTCGGAAACTGTAAAAATGGCGAGACTAATGAGAGAAATTGGCAGTGAAAATGGAAGTTTTGGCCTCGCCGGCGGTGACATTTATTTGCTGTTTTGGGCGGCTTTGGTTACACTCTCCATAATTTCAACCATAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCCGACGTCGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGCGGCGCTGGATGTGGTGCTTGA

mRNA sequence

ATGAAAACTTCCCAAAAAAACAAGAACTCAATTGGATTTCTTCTTTCTCTGAAACCCATCTCGGAAACTGTAAAAATGGCGAGACTAATGAGAGAAATTGGCAGTGAAAATGGAAGTTTTGGCCTCGCCGGCGGTGACATTTATTTGCTGTTTTGGGCGGCTTTGGTTACACTCTCCATAATTTCAACCATAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCCGACGTCGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGCGGCGCTGGATGTGGTGCTTGA

Coding sequence (CDS)

ATGAAAACTTCCCAAAAAAACAAGAACTCAATTGGATTTCTTCTTTCTCTGAAACCCATCTCGGAAACTGTAAAAATGGCGAGACTAATGAGAGAAATTGGCAGTGAAAATGGAAGTTTTGGCCTCGCCGGCGGTGACATTTATTTGCTGTTTTGGGCGGCTTTGGTTACACTCTCCATAATTTCAACCATAATTTTCTCTTGCTCCGACGGCATGTCAAAAGAGAGGAATTCCACGGCCGACGTCGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGCGGCGCTGGATGTGGTGCTTGA

Protein sequence

MKTSQKNKNSIGFLLSLKPISETVKMARLMREIGSENGSFGLAGGDIYLLFWAALVTLSIISTIIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCGA

Homology

[Close]

BLAST of ClCG04G010920 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 7.4e-30
Identity = 73/91 (80.22%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 9   NSIGFLLSLKPISETVKMARLMREIGSENGSFGLAGGDIYLLFWAALVTLSIISTIIFSC 68
           N +  L SLKPIS  VKMARLMREI S+NGSFGLAGG+ Y LFW AL TL IIST+IFSC
Sbjct: 13  NWVSSLYSLKPIS-IVKMARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSC 72

Query: 69  SDGMSKERNSTADVELYGGGCAAGCGAGCGA 100
           SDGMSK+RNST DVELYGGGCAAGCGAGCGA
Sbjct: 73  SDGMSKDRNSTVDVELYGGGCAAGCGAGCGA 102

[Close]

BLAST of ClCG04G010920 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 3.2e-25
Identity = 67/75 (89.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 26  MARLMREIGSENGSFGLAGGDIYLLFWAALVTLSIISTIIFSCSDGMS-KERNSTADVEL 85
           MARLMRE GS+NGSFGLA GDIYLLFWAAL TL IISTIIFSCSDGMS K+RNSTADVEL
Sbjct: 1   MARLMREFGSQNGSFGLA-GDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60

Query: 86  YGGGCAAGCGAGCGA 100
           YG GCAAGCGAGCGA
Sbjct: 61  YGAGCAAGCGAGCGA 74

[Close]

BLAST of ClCG04G010920 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-18
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 26 MARLMREIGSENGSFGLAGGDIYLLFWAALVTLSIISTIIFSCSDGMSKERNSTADVELY 85
          MARL+ EIGS +GSFGL+ GDI  LF AAL TL IIS I FSCSDG+SKERNSTADVELY
Sbjct: 1  MARLIGEIGSVDGSFGLS-GDISCLFLAALFTLCIISLITFSCSDGISKERNSTADVELY 60

Query: 86 GGGCAAGCGA 96
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 69

[Close]

BLAST of ClCG04G010920 vs. NCBI nr
Match: XP_015882794.1 (uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 26  MARLMREIGSENGSFGLAGGDIYLLFWAALVTLSIISTIIFSCSDGMSKERNSTADVELY 85
           M RL R++ S +GS G AG   +++ W AL+ + IIS IIFSC+DG+SKE+ STAD ELY
Sbjct: 1   MVRLWRDLASVHGS-GSAG---FVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 86  GGGCAAGCGAGCGA 100
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 70

[Close]

BLAST of ClCG04G010920 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 26 MARLMREIGSENGSFGLAGGDIYLLFW-AALVTLSIISTIIFSCSDGMSKERNSTADVEL 85
          M RL RE    +G  G +    +L+F+   LVTL I+STIIFSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 86 YGGGCAAGCGAGCG 99
          YGGGCAAGCGAGCG
Sbjct: 61 YGGGCAAGCGAGCG 74

[Close]

BLAST of ClCG04G010920 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.4e-26
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 26  MARLMREIGSENGSFGLAGGDIYLLFWAALVTLSIISTIIFSCSDGMSKERNSTADVELY 85
           MARLMREI S+NGSFGLAGG+ Y LFW AL TL IIST+IFSCSDGMSK+RNST DVELY
Sbjct: 1   MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDRNSTVDVELY 60

Query: 86  GGGCAAGCGAGCGA 100
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 74

[Close]

BLAST of ClCG04G010920 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 26  MARLMREIGSENGSFGLAGGDIYLLFWAALVTLSIISTIIFSCSDGMSKERNSTADVELY 85
           M RL RE+ + +G  G   G   +     LVTL I+STIIFSC+DG+SKE+ S  D ELY
Sbjct: 1   MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 86  GGGCAAGCGAGCGA 100
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 74

[Close]

BLAST of ClCG04G010920 vs. ExPASy TrEMBL
Match: A0A803R004 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 26  MARLMREIGSENGSFGLAGGDIYLLFWAALVTLSIISTIIFSCSDGMSKERNSTADVELY 85
           M RL RE+ + +G  G   G   +     LVTL I+STIIFSC+DG+SKE+ S  D ELY
Sbjct: 1   MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKTSQGDTELY 60

Query: 86  GGGCAAGCGAGCGA 100
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 74

[Close]

BLAST of ClCG04G010920 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 26  MARLMREIGSENGSFGLAGGDIYLLFWAALVTLSIISTIIFSCSDGMSKERNSTADVELY 85
           M RL R++ S +GS G AG   +++ W AL+ + IIS IIFSC+DG+SKE+ STAD ELY
Sbjct: 1   MVRLWRDLASVHGS-GSAG---FVVLWLALLGVCIISAIIFSCADGVSKEKTSTADTELY 60

Query: 86  GGGCAAGCGAGCGA 100
           GGGCAAGCGAGCGA
Sbjct: 61  GGGCAAGCGAGCGA 70

[Close]

BLAST of ClCG04G010920 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.0e-14
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 26 MARLMREIGSENGSFGLAGGDIYLLFW-AALVTLSIISTIIFSCSDGMSKERNSTADVEL 85
          M RL RE    +G  G +    +L+F+   LVTL I+STIIFSC+DG+SKE+ S AD EL
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKTSQADTEL 60

Query: 86 YGGGCAAGCGAGCG 99
          YGGGCAAGCGAGCG
Sbjct: 61 YGGGCAAGCGAGCG 74

[Close]

BLAST of ClCG04G010920 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 45 GDIYLLFWAALVTLSIISTIIFSCSDGMSKERNSTADVELYGGGCAAGCGAGCG 99
          G++ L  WAA+V  S+I+ +IFSCSD  SK   +    ++ G  CAAGCG GCG
Sbjct: 14 GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND---DVNGSSCAAGCGGGCG 64

[Close]

BLAST of ClCG04G010920 vs. TAIR 10
Match: AT3G18250.1 (Putative membrane lipoprotein )

HSP 1 Score: 41.2 bits (95), Expect = 5.7e-04
Identity = 22/53 (41.51%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 47 IYLLFWAALVTLSIISTIIFSCSDGMSKERNSTADVELYGGGC-AAGCGAGCG 99
          ++ + + A++   I+S ++FSC+DG+S  R +T+     GGGC  AGCG GCG
Sbjct: 24 LFHVVFLAVIGCCILSALLFSCADGVSDNR-ATSGTSTGGGGCGGAGCGGGCG 75

The following BLAST results are available for this feature:

BLAST of ClCG04G010920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652552.1	7.4e-30	80.22	hypothetical protein Csa_013579 [Cucumis sativus]	[more]
KAG6584341.1	3.2e-25	89.33	hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6572949.1	2.2e-18	80.00	hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_015882794.1	3.3e-14	63.51	uncharacterized protein LOC107418606 [Ziziphus jujuba]	[more]
PON38946.1	1.6e-13	60.81	hypothetical protein PanWU01x14_308610 [Parasponia andersonii]	[more]

BLAST of ClCG04G010920 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G010920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQU7	1.4e-26	85.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1	[more]
A0A803R005	1.2e-14	59.46	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803R004	1.2e-14	59.46	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6P3ZT85	1.6e-14	63.51	uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC10741860...	[more]
A0A2P5AQX4	8.0e-14	60.81	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE...	[more]

BLAST of ClCG04G010920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68238.1	1.9e-07	48.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G18250.1	5.7e-04	41.51	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199	TRANSMEMBRANE PROTEIN	coord: 20..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G010920.2	ClCG04G010920.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane