ClCG04G000810 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG04G000810
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase
Location	CG_Chr04: 2695117 .. 2697358 (+)
RNA-Seq Expression	ClCG04G000810
Synteny	ClCG04G000810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACAAAGGATTTATGTCAGTATAGTACGTTATGTGCAAGGCATGGCACTCAACATAATGAACAGGTTAGTGAACTCTCTGAGATTAGAAGTTGTTTATCTGAGCTAACCTCTATTATTCGAGAATTGGCTATTAGGAAATTGGACAATTTGGTGGCATGCAGAGTATGTTCGCTTCGAGGTCACACTTCTAAAGCATGTCCTCAGCTGTTGTGTGGCCCTATGCGCAATGCTTGCACCTCATGGGAGTTTTCTAGCCCGTACCTCTCTTATGGTAATTCTCATGCATACCATTATGGATGGGAGGATCAACCTTGGAAGAGCTATAGAGGCCAAGCTGAGCAGCAGATTCCTCAAACTGCAAGCCAAGGTATGATATTAGAACAAATAGTTTATGAACTTGCTGATTCTTCCTCTCAATTTCAGTAGGAATGTCTCCAACTCATGCAAGAGTGCTTGCTGAGCTTTGAATGATTTATCGACTCAAGCAAGAAAGGACTAGAGAAGCATGAGAATTTCTACGTGCCCTGACAGGCGAATCCTGCCGAACCTAGTGACGTTAAACATGTTGTGCTACCTGGAGGCAGCCAGGATTTTAAATATGCTTGCTTTTTAGTTTAGTTGTTTTTATTTTTTTATGGTTTAATTAGCTTTTTCTTATTTCTTTCTTAGGTGTCTAAGGGAAAGGAAAACCCTTGGAGAAGATCTGTCGTCCCGTGCGCTTCATTTCTCAAGGGAGTTTCTTTGTTCCCCTTCAATTTGTGCCCTGCTTTTAATTTTTGATTTTGATACATTGGGGACAATGTATGCTCTAAAAGTTGGGGGTGGTTTGGGTTTAGCTTGCTTTAGGTTGATGCATATCTAGTAGTCCTTGACCATCTAAGCTTGGACATGTGTGATTTAATTGCTTGTTTGCTTTGTTGCTTGTGCCCGTTATTATGACCGTTGATGATACACTTATTTAGGATCTTGCATGTTTGAGATAGTGTAGGAAGAAAACAAGCATGATTTTTTAGCCATTTTCAAAAACATTTTCTTTTATCTCTCATGCAAATTTGAGTTCTTCGTCTGACTATCCTAAGTCTTGCATGCTTAGAGTAGCATTATTGGGCTTATATTTTTGTTGTCACCCCGAAAGGCCTTAGTGATAGGATTAGACACTCCAAAACATGAATTTAGTAATGCGTGCAGAAGCATGTAACTGACCAATTTTCCCACTTATCTAGAAAGAAAAACCAAAGCAAAAGCAAAAGAAAAAAGAAAGAAAAAAACACAATAAAAAAATATGAAAAGAGAGAAAAAAAGAAAAAGAATAAGGAGAGGTTTTCTCCGCTTTATTGGGGATGCGTGTAGCGAGGAGTGGTCAGGCAACTCATGATTTCTTTTGCACCGAGAGCGTTCCCAAGAAATGAGCAAGCTTAGGCACCTTTGAAGGAATTTGACTCGTAGTTGGATGTCATTCATGTAACTCGTGTGGGCAAGCCAAAACGAAAGCAGATTTTTTTAATTAGGTTTCCTCCTCATTTGCTTAGAAATAAAAAGAAAAGAAAAAAAAAAAAAAGAGAGATAACAAGAATTGAGGTTGGTTTTCTCTTATTGCATGTCATTACCACTTTGAAATCTATTCCAGGCTTTGCTTTGACTTAAGTAAAAGGGTTTTGAACTCTTTTATGCATGAATAGGTTTGAACAAGGTTTCTTAAAATTGCCTCAATTGATTGATTGTTATTGAATTACACTGTTGATTGCTAGCATGATCTTATTAGACTATTAAAACGAGAGTAATGAGCCTTGAAATTAAGCAAACAAATATCTTATGCATGATTGTATATTTCTGCCTTGCTCGGGACGATCAAGAATTAAGTTGGGGGTAATTTGATAGAACCAAAAAGATGCTACTTTCCCTGGCTTAATTCAGGATCGTTCTAGGATTTTACATGTTTATTTCCTATGATTTTGTAGATTTTGAGCACAAGAGGTAGAATTGACCCTCGGAGTTGAAATTGAACAAAAAGAAACCAAAATGGAGCTATGGAGTATTAACCGTGAATAAAGAGAAGAAAAAGAAGCAAATTTAGGCAGTTGCCTAGTGCCTAGGCGCTGAGGACCCAAGAGCAAGCATCAGACGCTACCCTCCAGAATTTGACGCAGAAGATGCTGCGTGCATGCAAGAGCGCCCAGGCACTTGCTTGGTGCTTCAGTTTCTCTCCCAAGCACTTAGGCACCCCGACCAGATTTAA

mRNA sequence

ATGGCAACAAAGGATTTATGTCAGTATAGTACGTTATGTGCAAGGCATGGCACTCAACATAATGAACAGGTTAGTGAACTCTCTGAGATTAGAAGTTGTTTATCTGAGCTAACCTCTATTATTCGAGAATTGGCTATTAGGAAATTGGACAATTTGGTGGCATGCAGAGTATGTTCGCTTCGAGGTCACACTTCTAAAGCATGTCCTCAGCTGTTGTGTGGCCCTATGCGCAATGCTTGCACCTCATGGGAGTTTTCTAGCCCGTACCTCTCTTATGGTAATTCTCATGCATACCATTATGGATGGGAGGATCAACCTTGGAAGAGCTATAGAGGCCAAGCTGAGCAGCAGATTCCTCAAACTGCAAGCCAAGGCGCTGAGGACCCAAGAGCAAGCATCAGACGCTACCCTCCAGAATTTGACGCAGAAGATGCTGCGTGCATGCAAGAGCGCCCAGGCACTTGCTTGGTGCTTCAGTTTCTCTCCCAAGCACTTAGGCACCCCGACCAGATTTAA

Coding sequence (CDS)

ATGGCAACAAAGGATTTATGTCAGTATAGTACGTTATGTGCAAGGCATGGCACTCAACATAATGAACAGGTTAGTGAACTCTCTGAGATTAGAAGTTGTTTATCTGAGCTAACCTCTATTATTCGAGAATTGGCTATTAGGAAATTGGACAATTTGGTGGCATGCAGAGTATGTTCGCTTCGAGGTCACACTTCTAAAGCATGTCCTCAGCTGTTGTGTGGCCCTATGCGCAATGCTTGCACCTCATGGGAGTTTTCTAGCCCGTACCTCTCTTATGGTAATTCTCATGCATACCATTATGGATGGGAGGATCAACCTTGGAAGAGCTATAGAGGCCAAGCTGAGCAGCAGATTCCTCAAACTGCAAGCCAAGGCGCTGAGGACCCAAGAGCAAGCATCAGACGCTACCCTCCAGAATTTGACGCAGAAGATGCTGCGTGCATGCAAGAGCGCCCAGGCACTTGCTTGGTGCTTCAGTTTCTCTCCCAAGCACTTAGGCACCCCGACCAGATTTAA

Protein sequence

MATKDLCQYSTLCARHGTQHNEQVSELSEIRSCLSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYGNSHAYHYGWEDQPWKSYRGQAEQQIPQTASQGAEDPRASIRRYPPEFDAEDAACMQERPGTCLVLQFLSQALRHPDQI

Homology

[Close]

BLAST of ClCG04G000810 vs. NCBI nr
Match: XP_027124317.1 (uncharacterized protein LOC113741019 [Coffea arabica] >XP_027166750.1 uncharacterized protein LOC113766798 [Coffea eugenioides] >XP_027169561.1 uncharacterized protein LOC113769298 [Coffea eugenioides] >XP_027171907.1 uncharacterized protein LOC113771530 [Coffea eugenioides])

HSP 1 Score: 61.2 bits (147), Expect = 9.8e-06
Identity = 37/119 (31.09%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 13  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKA 72
           C + GT+ +    +++E+ S      LSELTS +R++A+  +     C +C+  GHT+ +
Sbjct: 177 CQQFGTREDVPTRKVNEVSSSSIQQQLSELTSFVRQIAVGNVQQAKVCGICTNSGHTTDS 236

Query: 73  CPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQPWKSYRGQAEQQIPQTASQG 126
           CPQL    +  A  +     P   Y   S++Y+ GW D P  SY G  +Q       QG
Sbjct: 237 CPQLQEEGIEQANMAGNMPMPRRQYDPYSNSYNPGWRDHPNLSYGGNKQQNFTPNRQQG 295

[Close]

BLAST of ClCG04G000810 vs. NCBI nr
Match: XP_027096156.1 (uncharacterized protein LOC113716055 [Coffea arabica])

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-05
Identity = 37/119 (31.09%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 13  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKA 72
           C + GT+ +    +++E+ S      LSELTS +R++A+    +   C +C+  GHT+ +
Sbjct: 208 CQQFGTRADVPTRKVNEVSSSSIEQQLSELTSFVRQIAVGNAQHAKVCGICTNIGHTTDS 267

Query: 73  CPQLLCGPMRNACTSWEFSSPYLSYGN-SHAYHYGWEDQPWKSYRGQAEQQIPQTASQG 126
           CPQL    +  A  +     P   Y + S++Y+ GW D P  SY G  +Q       QG
Sbjct: 268 CPQLHEEGIEQANMAGNMPMPRRQYDSYSNSYNPGWRDHPNLSYGGNKQQNFIPNRQQG 326

[Close]

BLAST of ClCG04G000810 vs. NCBI nr
Match: XP_027120514.1 (uncharacterized protein LOC113737484 [Coffea arabica] >XP_027120515.1 uncharacterized protein LOC113737485 [Coffea arabica])

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-05
Identity = 38/119 (31.93%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 13  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKA 72
           C + GT+ +    +++E+ S      LSELTS +R++A+        C +C+  GHT+ A
Sbjct: 208 CQQFGTRADVPTRKVNEVSSSSIQQQLSELTSFVRQIAVGNAQQAKVCGICTNIGHTADA 267

Query: 73  CPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQPWKSYRGQAEQQIPQTASQG 126
           CPQL    +  A  +     P   Y   S++Y+ GW D P  SY G  +Q       QG
Sbjct: 268 CPQLQEEGIEQANMAGNMPMPRRQYDPYSNSYNPGWRDHPNLSYGGNKQQNFIPNRQQG 326

[Close]

BLAST of ClCG04G000810 vs. NCBI nr
Match: XP_027118330.1 (uncharacterized protein LOC113735530 [Coffea arabica])

HSP 1 Score: 58.5 bits (140), Expect = 6.4e-05
Identity = 37/119 (31.09%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 13  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKA 72
           C + GT+ +    +++E+ S      LSELTS +R++A+        C +C+  GHT+ +
Sbjct: 220 CQQFGTRADVPTRKVNEVSSSSIEQQLSELTSFVRQIAVGNAQQAKVCGICTNIGHTTDS 279

Query: 73  CPQLLCGPMRNACTSWEFSSPYLSY-GNSHAYHYGWEDQPWKSYRGQAEQQIPQTASQG 126
           CPQL    +  A  +     P   Y   S++Y+ GW D P  SY G  +Q       QG
Sbjct: 280 CPQLQEEGIEQANMAGNMPMPRRQYEPYSNSYNPGWRDHPNLSYEGNKQQNFIPNRQQG 338

[Close]

BLAST of ClCG04G000810 vs. NCBI nr
Match: XP_027172204.1 (uncharacterized protein LOC113771846 [Coffea eugenioides])

HSP 1 Score: 58.2 bits (139), Expect = 8.3e-05
Identity = 42/138 (30.43%), Postives = 67/138 (48.55%), Query Frame = 0


Query: 13  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKA 72
           C + GT+ +    +++E+ S      LSELTS +R++A+  +     C +C+  GHT+ +
Sbjct: 151 CQQFGTREDVPTRKVNEVSSSSIQQQLSELTSFVRQIAVGNVQQAKVCGICTNSGHTTDS 210

Query: 73  CPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQPWKSY-----------RGQAE 132
           CPQL    +  A  +     P   Y   S++Y+ GW D P  SY           R Q  
Sbjct: 211 CPQLQEEGIEQANMAGNMPMPRRQYDLYSNSYNPGWRDHPNLSYGRNKQQNFTPNRQQRF 270

Query: 133 QQIPQTASQGAEDPRASI 134
           QQ  QT +Q + +P  S+
Sbjct: 271 QQQYQTKNQPSSNPGMSL 288

[Close]

BLAST of ClCG04G000810 vs. ExPASy TrEMBL
Match: A0A6P6XE77 (uncharacterized protein LOC113741019 OS=Coffea arabica OX=13443 GN=LOC113741019 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.8e-06
Identity = 37/119 (31.09%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 13  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKA 72
           C + GT+ +    +++E+ S      LSELTS +R++A+  +     C +C+  GHT+ +
Sbjct: 177 CQQFGTREDVPTRKVNEVSSSSIQQQLSELTSFVRQIAVGNVQQAKVCGICTNSGHTTDS 236

Query: 73  CPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQPWKSYRGQAEQQIPQTASQG 126
           CPQL    +  A  +     P   Y   S++Y+ GW D P  SY G  +Q       QG
Sbjct: 237 CPQLQEEGIEQANMAGNMPMPRRQYDPYSNSYNPGWRDHPNLSYGGNKQQNFTPNRQQG 295

[Close]

BLAST of ClCG04G000810 vs. ExPASy TrEMBL
Match: A0A6P6WYK5 (uncharacterized protein LOC113737484 OS=Coffea arabica OX=13443 GN=LOC113737484 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-05
Identity = 38/119 (31.93%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 13  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKA 72
           C + GT+ +    +++E+ S      LSELTS +R++A+        C +C+  GHT+ A
Sbjct: 208 CQQFGTRADVPTRKVNEVSSSSIQQQLSELTSFVRQIAVGNAQQAKVCGICTNIGHTADA 267

Query: 73  CPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQPWKSYRGQAEQQIPQTASQG 126
           CPQL    +  A  +     P   Y   S++Y+ GW D P  SY G  +Q       QG
Sbjct: 268 CPQLQEEGIEQANMAGNMPMPRRQYDPYSNSYNPGWRDHPNLSYGGNKQQNFIPNRQQG 326

[Close]

BLAST of ClCG04G000810 vs. ExPASy TrEMBL
Match: A0A6P6V0B6 (uncharacterized protein LOC113716055 OS=Coffea arabica OX=13443 GN=LOC113716055 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-05
Identity = 37/119 (31.09%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 13  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKA 72
           C + GT+ +    +++E+ S      LSELTS +R++A+    +   C +C+  GHT+ +
Sbjct: 208 CQQFGTRADVPTRKVNEVSSSSIEQQLSELTSFVRQIAVGNAQHAKVCGICTNIGHTTDS 267

Query: 73  CPQLLCGPMRNACTSWEFSSPYLSYGN-SHAYHYGWEDQPWKSYRGQAEQQIPQTASQG 126
           CPQL    +  A  +     P   Y + S++Y+ GW D P  SY G  +Q       QG
Sbjct: 268 CPQLHEEGIEQANMAGNMPMPRRQYDSYSNSYNPGWRDHPNLSYGGNKQQNFIPNRQQG 326

[Close]

BLAST of ClCG04G000810 vs. ExPASy TrEMBL
Match: A0A6P6WSN8 (uncharacterized protein LOC113735530 OS=Coffea arabica OX=13443 GN=LOC113735530 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-05
Identity = 37/119 (31.09%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 13  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKA 72
           C + GT+ +    +++E+ S      LSELTS +R++A+        C +C+  GHT+ +
Sbjct: 220 CQQFGTRADVPTRKVNEVSSSSIEQQLSELTSFVRQIAVGNAQQAKVCGICTNIGHTTDS 279

Query: 73  CPQLLCGPMRNACTSWEFSSPYLSY-GNSHAYHYGWEDQPWKSYRGQAEQQIPQTASQG 126
           CPQL    +  A  +     P   Y   S++Y+ GW D P  SY G  +Q       QG
Sbjct: 280 CPQLQEEGIEQANMAGNMPMPRRQYEPYSNSYNPGWRDHPNLSYEGNKQQNFIPNRQQG 338

[Close]

BLAST of ClCG04G000810 vs. ExPASy TrEMBL
Match: A0A6P6TC26 (uncharacterized protein LOC113699861 OS=Coffea arabica OX=13443 GN=LOC113699861 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-05
Identity = 37/119 (31.09%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 13  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKA 72
           C + GT+ +    +++E+ S      LSELTS +R++A+        C +C+  GHT+ +
Sbjct: 273 CQQFGTRADVPTRKVNEVSSSSIEQQLSELTSFVRQIAVGNAQQAKVCGICTNIGHTTDS 332

Query: 73  CPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQPWKSYRGQAEQQIPQTASQG 126
           CPQL    +  A  +     P   Y   S++Y+ GW D P  SY G  +Q       QG
Sbjct: 333 CPQLHEEGIEQANMAGNMPMPRRQYDPYSNSYNPGWRDHPNLSYGGNKQQNFIPNRQQG 391

The following BLAST results are available for this feature:

BLAST of ClCG04G000810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027124317.1	9.8e-06	31.09	uncharacterized protein LOC113741019 [Coffea arabica] >XP_027166750.1 uncharacte...	[more]
XP_027096156.1	3.7e-05	31.09	uncharacterized protein LOC113716055 [Coffea arabica]	[more]
XP_027120514.1	3.7e-05	31.93	uncharacterized protein LOC113737484 [Coffea arabica] >XP_027120515.1 uncharacte...	[more]
XP_027118330.1	6.4e-05	31.09	uncharacterized protein LOC113735530 [Coffea arabica]	[more]
XP_027172204.1	8.3e-05	30.43	uncharacterized protein LOC113771846 [Coffea eugenioides]	[more]

BLAST of ClCG04G000810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG04G000810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P6XE77	4.8e-06	31.09	uncharacterized protein LOC113741019 OS=Coffea arabica OX=13443 GN=LOC113741019 ...	[more]
A0A6P6WYK5	1.8e-05	31.93	uncharacterized protein LOC113737484 OS=Coffea arabica OX=13443 GN=LOC113737484 ...	[more]
A0A6P6V0B6	1.8e-05	31.09	uncharacterized protein LOC113716055 OS=Coffea arabica OX=13443 GN=LOC113716055 ...	[more]
A0A6P6WSN8	3.1e-05	31.09	uncharacterized protein LOC113735530 OS=Coffea arabica OX=13443 GN=LOC113735530 ...	[more]
A0A6P6TC26	5.3e-05	31.09	uncharacterized protein LOC113699861 OS=Coffea arabica OX=13443 GN=LOC113699861 ...	[more]

BLAST of ClCG04G000810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G000810.2	ClCG04G000810.2	mRNA