ClCG04G000510 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G000510
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionS locus-related glycoprotein 1 binding pollen coat
LocationCG_Chr04: 1890915 .. 1891663 (-)
RNA-Seq ExpressionClCG04G000510
SyntenyClCG04G000510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAATCTTCCTGTTTCTCGCGTTGCCTTCATTATGCTTATCTTTGCAGGTTCTCCTCTACTTATAACTTATATATTTTTATTAAGTGTTATCTGAGAATAAGTGCATCGGTATGAGACATATTTTGTGAATGGAGACAAAGGAAAAAGAAAACGACATGAATACGTAGTAACAAGAGAATATTGCTCATTCGTTTGCATGCTCTATTTTATCCATTCGATGAGTTAAAGAAAAAAAATGTTTACTAATTATTTGATATGTCATATCTATCCACGTATGATCTCGATGGTTTGATGTGTTGGTTCCTTGTATTTTTCAGTTTATTTGCATTCGATATTAAAATGACTGAGTGTTAATGATTTTCTTGTGCAACAAGGTTTTCTTGTAACACCAACTCCCGTGGGTTACTATATTTTATTTTAAGAAAACATTCAACGTAGAAAACTTTAAGATTCAAGAATATCACTGATGCAAACATAAATGGTTATCGTAATGAAATCTACCATATGCATAATGGTTAATTATTTTACTCTTGTTGTTGTGTAGTTGCAATGATTTTGGTACCTCAAGGAGCCTCAGCAGCTCAAAAATGTCAAGATAGATTGTACGTTGGCGGGTGCACGCCACTTGATTGTGGACAAAAGTGCAGGCAGCTACACCATAATGCAACGCATCAATGCATACCTACTGATGAAACGTTTACAAACTATGCTTGTTATTGTTTCTTTACTTGTCCTCAAACTTGA

mRNA sequence

ATGACAAATCTTCCTGTTTCTCGCGTTGCCTTCATTATGCTTATCTTTGCAGTGTTATCTGAGAATAAGTGCATCGTTGCAATGATTTTGGTACCTCAAGGAGCCTCAGCAGCTCAAAAATGTCAAGATAGATTGTACGTTGGCGGGTGCACGCCACTTGATTGTGGACAAAAGTGCAGGCAGCTACACCATAATGCAACGCATCAATGCATACCTACTGATGAAACGTTTACAAACTATGCTTGTTATTGTTTCTTTACTTGTCCTCAAACTTGA

Coding sequence (CDS)

ATGACAAATCTTCCTGTTTCTCGCGTTGCCTTCATTATGCTTATCTTTGCAGTGTTATCTGAGAATAAGTGCATCGTTGCAATGATTTTGGTACCTCAAGGAGCCTCAGCAGCTCAAAAATGTCAAGATAGATTGTACGTTGGCGGGTGCACGCCACTTGATTGTGGACAAAAGTGCAGGCAGCTACACCATAATGCAACGCATCAATGCATACCTACTGATGAAACGTTTACAAACTATGCTTGTTATTGTTTCTTTACTTGTCCTCAAACTTGA

Protein sequence

MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTCPQT
Homology
BLAST of ClCG04G000510 vs. NCBI nr
Match: KAA0042348.1 (S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >TYK15471.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 6.6e-17
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 1  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCR 60
          MT L  S +  I L  A        VAMILVPQGA A ++CQD+LY  GCT  DCGQKC 
Sbjct: 1  MTKLYSSWILTIALTIA--------VAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCW 60

Query: 61 QLHHNATHQCIPTDETFTNYACYCFFTCPQ 91
          + HH+A+HQCIPTD   T YACYCF+ C Q
Sbjct: 61 EKHHDASHQCIPTDPGQTIYACYCFYNCGQ 82

BLAST of ClCG04G000510 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 50/88 (56.82%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 1  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCR 60
          MT L  S +  I+LI A        VAMI +PQGA AA +CQD LY  GCT  DCGQKC 
Sbjct: 1  MTKLYSSWILTIVLIIA--------VAMISIPQGALAA-RCQDILYNSGCTLADCGQKCW 60

Query: 61 QLHHNATHQCIPTDETFTNYACYCFFTC 89
          + HH A+ QCIPTD   T YACYCF+TC
Sbjct: 61 EKHHEASRQCIPTDPDQTIYACYCFYTC 79

BLAST of ClCG04G000510 vs. NCBI nr
Match: KAE8649772.1 (hypothetical protein Csa_012405, partial [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-12
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 27 AMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFF 86
          A++L  Q  SAAQ+CQD LY  GC   DCG+KC + HH  +HQCIPT+ + T YACYCFF
Sbjct: 1  ALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFF 60

Query: 87 TC 89
           C
Sbjct: 61 DC 62

BLAST of ClCG04G000510 vs. NCBI nr
Match: CAB4286917.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-07
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 31 VPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC 89
          VPQ A A ++C+++LY  GCT LDCG+KC   HH+A H C+  +    +YACYC F C
Sbjct: 37 VPQ-AYAQKRCEEQLYSSGCTLLDCGKKCWDKHHDAGHTCV-ANVAQIDYACYCMFNC 92

BLAST of ClCG04G000510 vs. NCBI nr
Match: BBH07492.1 (hypothetical protein Prudu_019451 [Prunus dulcis])

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-06
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 31  VPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC 89
           VPQ A A ++C ++LY  GCT  DCG+KC + HH+  ++CI  +   T+YACYC F C
Sbjct: 57  VPQ-AYAQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

BLAST of ClCG04G000510 vs. ExPASy TrEMBL
Match: A0A0A0KYP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.7e-21
Identity = 56/90 (62.22%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 1  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCR 60
          M NL   RVA I++IFA        V+MILVPQG SA  KCQDRLYVGGC   +CGQKC 
Sbjct: 18 MANLSSFRVAIIIVIFA--------VSMILVPQGTSAL-KCQDRLYVGGCIQHECGQKCS 77

Query: 61 QLHHNATHQCIPTDETFTNYACYCFFTCPQ 91
          QLHH  T +CI TD TFT YACYCF+ CP+
Sbjct: 78 QLHHGGTSKCISTDPTFTKYACYCFYNCPE 98

BLAST of ClCG04G000510 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.2e-17
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 1  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCR 60
          MT L  S +  I L  A        VAMILVPQGA A ++CQD+LY  GCT  DCGQKC 
Sbjct: 1  MTKLYSSWILTIALTIA--------VAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCW 60

Query: 61 QLHHNATHQCIPTDETFTNYACYCFFTCPQ 91
          + HH+A+HQCIPTD   T YACYCF+ C Q
Sbjct: 61 EKHHDASHQCIPTDPGQTIYACYCFYNCGQ 82

BLAST of ClCG04G000510 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.6e-15
Identity = 50/88 (56.82%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 1  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCR 60
          MT L  S +  I+LI A        VAMI +PQGA AA +CQD LY  GCT  DCGQKC 
Sbjct: 1  MTKLYSSWILTIVLIIA--------VAMISIPQGALAA-RCQDILYNSGCTLADCGQKCW 60

Query: 61 QLHHNATHQCIPTDETFTNYACYCFFTC 89
          + HH A+ QCIPTD   T YACYCF+TC
Sbjct: 61 EKHHEASRQCIPTDPDQTIYACYCFYTC 79

BLAST of ClCG04G000510 vs. ExPASy TrEMBL
Match: A0A0A0L2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 7  SRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNA 66
          SR+    LIFA        VA++L  Q  SAAQ+CQD LY  GC   DCG+KC + HH  
Sbjct: 4  SRIICFALIFA--------VALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTV 63

Query: 67 THQCIPTDETFTNYACYCFFTC 89
          +HQCIPT+ + T YACYCFF C
Sbjct: 64 SHQCIPTNPSQTIYACYCFFDC 77

BLAST of ClCG04G000510 vs. ExPASy TrEMBL
Match: A0A6J5VH03 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44688 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 31 VPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC 89
          VPQ A A ++C+++LY  GCT LDCG+KC   HH+A H C+  +    +YACYC F C
Sbjct: 37 VPQ-AYAQKRCEEQLYSSGCTLLDCGKKCWDKHHDAGHTCV-ANVAQIDYACYCMFNC 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042348.16.6e-1756.67S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >T... [more]
KGN64987.11.4e-1456.82hypothetical protein Csa_022748 [Cucumis sativus][more]
KAE8649772.11.7e-1258.06hypothetical protein Csa_012405, partial [Cucumis sativus][more]
CAB4286917.14.7e-0750.00unnamed protein product [Prunus armeniaca][more]
BBH07492.12.3e-0648.28hypothetical protein Prudu_019451 [Prunus dulcis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KYP74.7e-2162.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1[more]
A0A5A7THQ73.2e-1756.67S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O... [more]
A0A0A0LVZ56.6e-1556.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1[more]
A0A0A0L2R31.6e-1352.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1[more]
A0A6J5VH032.3e-0750.00Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS44688 PE=3 S... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851Defensin-like proteinPFAMPF07333SLR1-BPcoord: 38..88
e-value: 2.3E-5
score: 24.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G000510.1ClCG04G000510.1mRNA