ClCG04G000040 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG04G000040
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTIR domain-containing protein
LocationCG_Chr04: 84981 .. 86850 (+)
RNA-Seq ExpressionClCG04G000040
SyntenyClCG04G000040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCGGTACAAATAACTGGGCATTATGCAAAAACAATAAAGAAAATGTATATTAATATTTGAGTAATAGAGTTTTGGCATGATATAAATATTCATCTATACTATATTAAAAGGGGGAATAAGAGAGAATTTTTGTCTTCCCTTTTTGTCCCTACATTTTTAGTAAATGACTACTTTGCTAGACTCTTTATTTAGTGTCTGCTACGCGCGATGCTAGGAGAATAGAGTTATAACCTTATGTCGACGGGGCACAACTCATTGAATGCACATGATTATGTATAAAAATGTGACTATTCAAGCTTAGGTGTCCATTGATACCTTTTAATCTTTGGAACACCACTCTTCGAATTTAGGTGTCTATTGATTGTTTGTGTGTAGGTGGTTATACATCTAACGAATATATTCATACATGTATGGATGTGATCAATATAAAAGGCGACTTATCAGGTTTAGGTGTTAGTTGAGAGACATTAGGTCCTTCATATTTTTACTTTACAATTTATTAACATAATTTATAATTAATAAATATAAATAAATTTTCGCATTTACATTAATCTTTAGAAAATAAAAAATAAAATAATAAAATATTAAATTCATAAACATGTGCATTGTACGTAAGTCATTACTAGTTATTCGTAGCCTAAATGAATTATTATAAGACCACACTCCATGAAACATGAAACAGACACATGTATGAAAGATTGATTAAATATTGGTTTAGGAACATGTAAATAAAACCGGTTAAATTTGTGGTGTATTTTATATTATTAAATATTATTGAGTATATTCTTACAAAGAAACATATTTATTTGGGTGCATATACATATACACAAGAATGGAATATTGAAGATGTAAGGAAAATAACTAAGTATGGAATTAGGCTAAACAGAGGATCTAAATTCCTAATTTACAGCTTAATTACCAATAATGGTGAGTTGTTTAATGTTGGGAAATCACAAGGATATTATAATTAATTACTAAAATATGGAATGAATCGACATATAATATTATAATAATAATAATAATAATAATAACAATAATAATAATATTCCTCCTCCTCTGATTTTCACGGCCCTCAATAACACTTCTCATTTTCAATCTAATTTTAATTTCTCCCAAAAATAATGATTAAAAAAAAGAAAGAAAGAAAAGATACGAAAATATAATTATAATCACTTAAAATAGTGTCTTGTGTTTTGTTGATATATATTAGGTTGAGAATATTGTGTTTATAAGATTTGAGTTTAGGGGTGAGATTTATGATATGGGAGAAGAAAAAGAGGGAGAAAAAAGCTCATTGGGATCAGAAAAGAAGGAAAGGAGGAGGAAGAAGAGTTTGTTTGAATGGAGTAAAGGAGAAGAGGTAAATCTAGTGAAGAAGCTGATTGAGTTCCGTACAAAGAAGATGGGTGACGAAGAATTTTATCCGTTTTTGAGAAACGGGTCATTGGCTGAGGTGTCCAAGATTCAAATATTCAACAAGATTCAACAACTCAAAAACGAATATTTGGAGAAGAAGTTGGAGTTGAGAAAGATGAGAATCAAACATTTGAAATACGAGAATGATGATGAGATTTTTGAGTTATCAAATCGACTTTGGGGTGAAGTTGAAACAACTGGAAGCACTTCTACCTCTAAAGCGTTGGATGTGTGCAGTAGGAGTTATTTTGAAGGGTTTTTTGATGGCCATGGCCTTCATGTACAACTATTTACGCCATCTTTTCTCCATTCAACCAACAAGGATATCCACCATTTGTTTTCTCTTCAAAATCATCACTTCTTAATCAAAGCTAATTTGAAGGCTCAACTTGCCCAACTAAAGTACCACATCATTCAACATCCTTACAATAATCCTACCAATCTATAA

mRNA sequence

ATGACATCGGTTGAGAATATTGTGTTTATAAGATTTGAGTTTAGGGGTGAGATTTATGATATGGGAGAAGAAAAAGAGGGAGAAAAAAGCTCATTGGGATCAGAAAAGAAGGAAAGGAGGAGGAAGAAGAGTTTGTTTGAATGGAGTAAAGGAGAAGAGGTAAATCTAGTGAAGAAGCTGATTGAGTTCCGTACAAAGAAGATGGGTGACGAAGAATTTTATCCGTTTTTGAGAAACGGGTCATTGGCTGAGGTGTCCAAGATTCAAATATTCAACAAGATTCAACAACTCAAAAACGAATATTTGGAGAAGAAGTTGGAGTTGAGAAAGATGAGAATCAAACATTTGAAATACGAGAATGATGATGAGATTTTTGAGTTATCAAATCGACTTTGGGGTGAAGTTGAAACAACTGGAAGCACTTCTACCTCTAAAGCGTTGGATGTGTGCAGTAGGAGTTATTTTGAAGGGTTTTTTGATGGCCATGGCCTTCATGTACAACTATTTACGCCATCTTTTCTCCATTCAACCAACAAGGATATCCACCATTTGTTTTCTCTTCAAAATCATCACTTCTTAATCAAAGCTAATTTGAAGGCTCAACTTGCCCAACTAAAGTACCACATCATTCAACATCCTTACAATAATCCTACCAATCTATAA

Coding sequence (CDS)

ATGACATCGGTTGAGAATATTGTGTTTATAAGATTTGAGTTTAGGGGTGAGATTTATGATATGGGAGAAGAAAAAGAGGGAGAAAAAAGCTCATTGGGATCAGAAAAGAAGGAAAGGAGGAGGAAGAAGAGTTTGTTTGAATGGAGTAAAGGAGAAGAGGTAAATCTAGTGAAGAAGCTGATTGAGTTCCGTACAAAGAAGATGGGTGACGAAGAATTTTATCCGTTTTTGAGAAACGGGTCATTGGCTGAGGTGTCCAAGATTCAAATATTCAACAAGATTCAACAACTCAAAAACGAATATTTGGAGAAGAAGTTGGAGTTGAGAAAGATGAGAATCAAACATTTGAAATACGAGAATGATGATGAGATTTTTGAGTTATCAAATCGACTTTGGGGTGAAGTTGAAACAACTGGAAGCACTTCTACCTCTAAAGCGTTGGATGTGTGCAGTAGGAGTTATTTTGAAGGGTTTTTTGATGGCCATGGCCTTCATGTACAACTATTTACGCCATCTTTTCTCCATTCAACCAACAAGGATATCCACCATTTGTTTTCTCTTCAAAATCATCACTTCTTAATCAAAGCTAATTTGAAGGCTCAACTTGCCCAACTAAAGTACCACATCATTCAACATCCTTACAATAATCCTACCAATCTATAA

Protein sequence

MTSVENIVFIRFEFRGEIYDMGEEKEGEKSSLGSEKKERRRKKSLFEWSKGEEVNLVKKLIEFRTKKMGDEEFYPFLRNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIFELSNRLWGEVETTGSTSTSKALDVCSRSYFEGFFDGHGLHVQLFTPSFLHSTNKDIHHLFSLQNHHFLIKANLKAQLAQLKYHIIQHPYNNPTNL
Homology
BLAST of ClCG04G000040 vs. NCBI nr
Match: KAA0054121.1 (hypothetical protein E6C27_scaffold131G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 3.2e-65
Identity = 143/211 (67.77%), Postives = 167/211 (79.15%), Query Frame = 0

Query: 16  GEIYDMGEEKEGEKSSLGSEKKERRRKKSLFEWSKGEEVNLVKKLIEFRTKKMGDEEFYP 75
           GEI DM EEKE  KSSLGSEKK+RR  KSLFEWSKGEE+NL+KKL+EF +K +  EEFYP
Sbjct: 48  GEIDDMEEEKERRKSSLGSEKKKRR--KSLFEWSKGEELNLLKKLVEFNSKNISREEFYP 107

Query: 76  FLRNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYEND-------DEIFELS 135
           FLRNGSLAEVSKIQIF+KIQQLK+EYLE KLELRKMR +++K E+D       DE FELS
Sbjct: 108 FLRNGSLAEVSKIQIFDKIQQLKSEYLENKLELRKMRKRNVKLEDDDDYNDKRDEGFELS 167

Query: 136 NRLWGEVETTGSTSTSKALDVCSRSYFEGFFDGHGLHVQLFTPSFLHSTNKDIHHLFSLQ 195
           N+LWGEV+ T   S SKAL+VCSR+Y+EGFF+  GL VQLF PSF  +T KDI HLF+L+
Sbjct: 168 NQLWGEVDETERASNSKALEVCSRNYYEGFFESCGLDVQLFDPSFHDATKKDIDHLFNLE 227

Query: 196 NHHFLIKANLKAQLAQLKYHIIQHPYNNPTN 220
           +H  L KA L AQ+ QLKY +IQ   NNPTN
Sbjct: 228 HHVILSKAKLTAQILQLKYDLIQARVNNPTN 256

BLAST of ClCG04G000040 vs. NCBI nr
Match: KAG6585881.1 (hypothetical protein SDJN03_18614, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-45
Identity = 108/195 (55.38%), Postives = 137/195 (70.26%), Query Frame = 0

Query: 29  KSSLGSEKKERRRKKSLFEWSKGEEVNLVKKLIEFRTKKMGDEEFYPFLRNGSLAEVSKI 88
           K  +      +++ K+LF+WS+GEE+NL+ KL+EF    +  E+FYPFLR+GSLA+V KI
Sbjct: 5   KDIIKDTSTRQKKAKTLFQWSEGEELNLLNKLVEFSANNLDHEQFYPFLRSGSLADVPKI 64

Query: 89  QIFNKIQQLKNEYLEKKLELRKMRIKHLKYEND--DEIFELSNRLWG--EVET-TGSTST 148
           QIF+KIQQLK ++LE KLE R   + H   E +  DE FELSNRLWG  E+ET T + ST
Sbjct: 65  QIFDKIQQLKRKHLE-KLESRVQMVSHADDERNERDESFELSNRLWGENEIETETQNVST 124

Query: 149 SKALDVCSRSYFEGFFDGHGLHVQLFTPSFLHSTNKDIHHLFSLQNHHFLIKANLKAQLA 208
           SKA D  S S FE  F+GH LH+  FTPSFL +T K++  L  LQNHH LIKANLKAQLA
Sbjct: 125 SKAFDAWSMSSFEALFEGHSLHLDAFTPSFLKATKKEMDELLDLQNHHSLIKANLKAQLA 184

Query: 209 QLKYHIIQHPYNNPT 219
           QLK+H+ Q  + N T
Sbjct: 185 QLKHHLTQTRFENST 198

BLAST of ClCG04G000040 vs. NCBI nr
Match: KGN49711.1 (hypothetical protein Csa_018385 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 8.7e-39
Identity = 104/206 (50.49%), Postives = 132/206 (64.08%), Query Frame = 0

Query: 21  MGEEKEGEKSSLGSEKKERRRKKSLFEWSKGEEVNLVKKLIEFRTKKMGDEEFYPFLRNG 80
           M E KEG K S GS KK+RR  KSLFEWSKGEE+NL+KKL+EF TK +  EEFYPFLRNG
Sbjct: 1   MEEGKEGRKRSTGSGKKKRR--KSLFEWSKGEELNLLKKLVEFNTKNISREEFYPFLRNG 60

Query: 81  SLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEI-------FELSNRLWG 140
           SLAEVS+ QIF KIQ+LK EYL++KLELRKMR +++K E+DD+        FELSN +WG
Sbjct: 61  SLAEVSRTQIFEKIQELKREYLKQKLELRKMRKRNVKMEDDDDFNNKRDEGFELSNEVWG 120

Query: 141 EVETTGSTSTSKALDVCSRSYFEGFFDGHGLHVQLFTPSFLHSTNKDIHHLFSLQNHHFL 200
           +V+ T   S SK L+                           +  KDI  LF+L++  FL
Sbjct: 121 KVDETERASISKVLE--------------------------DAAKKDIDRLFNLEHQAFL 178

Query: 201 IKANLKAQLAQLKYHIIQHPYNNPTN 220
            K+ L ++L +LK  IIQ P  +PT+
Sbjct: 181 FKSKLVSKLVKLKNDIIQAPITDPTH 178

BLAST of ClCG04G000040 vs. NCBI nr
Match: KAG6575378.1 (hypothetical protein SDJN03_26017, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-11
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 122 DEIFELSNRLWGEVE-TTGSTSTSKALDVCSRSYFEGFFDGHGLHVQLFTPSFLHSTNKD 181
           DE+FELS R  GE E  T S S S  L+V ++  FE   + H L + LF PS L +  K+
Sbjct: 6   DEVFELSKRFSGENEIETQSGSASTILEVSNKRNFEALLERHRLRLDLFIPSDLDAIKKE 65

Query: 182 IHHLFSLQNHHFLIKANLKAQLAQLKYHIIQ 212
           +  LF LQN + LIKANLKAQLAQLK+ I++
Sbjct: 66  VDELFYLQNQYSLIKANLKAQLAQLKHDIVR 96

BLAST of ClCG04G000040 vs. NCBI nr
Match: XP_022158998.1 (probable transcription factor At4g01260 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-08
Identity = 51/193 (26.42%), Postives = 99/193 (51.30%), Query Frame = 0

Query: 22  GEEKEGEKSSLGSEKKERRRKKSL-FEWSKGEEVNLVKKLIEFRTKKMG-DEEFYPFLRN 81
           G EK+ EK S  + K+E ++ K + F WS  +E  ++K   EF  K     ++FY F++N
Sbjct: 37  GREKDEEKCSSPNSKEESKKSKKMGFHWSWSDECVILKNFYEFAGKNGSYSKDFYHFVKN 96

Query: 82  GSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIFELSNRLWGEVETTG 141
               +VS  Q+ +K+ +L+  +L+ + +  K+R+K  K    ++++E+SN +WG    T 
Sbjct: 97  KLSVDVSNSQLSDKVYRLRKRFLKDECK-GKIRMKFSKGNQLEKLYEMSNNIWGSNSNTQ 156

Query: 142 STST------SKALDVCSRSYFEGFFDGHGLHVQLFTPSFLHSTNKDIHHLFSLQNHHFL 201
           +T +      ++A++      FE   +   + +    P+ L    KD   +   Q+ + L
Sbjct: 157 NTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPPNVLXDIRKDWEQMKMAQDEYEL 216

Query: 202 IKANLKAQLAQLK 207
             ANL  Q++ ++
Sbjct: 217 KNANLLLQISHIR 228

BLAST of ClCG04G000040 vs. ExPASy TrEMBL
Match: A0A5A7UKP8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00330 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.5e-65
Identity = 143/211 (67.77%), Postives = 167/211 (79.15%), Query Frame = 0

Query: 16  GEIYDMGEEKEGEKSSLGSEKKERRRKKSLFEWSKGEEVNLVKKLIEFRTKKMGDEEFYP 75
           GEI DM EEKE  KSSLGSEKK+RR  KSLFEWSKGEE+NL+KKL+EF +K +  EEFYP
Sbjct: 48  GEIDDMEEEKERRKSSLGSEKKKRR--KSLFEWSKGEELNLLKKLVEFNSKNISREEFYP 107

Query: 76  FLRNGSLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYEND-------DEIFELS 135
           FLRNGSLAEVSKIQIF+KIQQLK+EYLE KLELRKMR +++K E+D       DE FELS
Sbjct: 108 FLRNGSLAEVSKIQIFDKIQQLKSEYLENKLELRKMRKRNVKLEDDDDYNDKRDEGFELS 167

Query: 136 NRLWGEVETTGSTSTSKALDVCSRSYFEGFFDGHGLHVQLFTPSFLHSTNKDIHHLFSLQ 195
           N+LWGEV+ T   S SKAL+VCSR+Y+EGFF+  GL VQLF PSF  +T KDI HLF+L+
Sbjct: 168 NQLWGEVDETERASNSKALEVCSRNYYEGFFESCGLDVQLFDPSFHDATKKDIDHLFNLE 227

Query: 196 NHHFLIKANLKAQLAQLKYHIIQHPYNNPTN 220
           +H  L KA L AQ+ QLKY +IQ   NNPTN
Sbjct: 228 HHVILSKAKLTAQILQLKYDLIQARVNNPTN 256

BLAST of ClCG04G000040 vs. ExPASy TrEMBL
Match: A0A0A0KPQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G078280 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.2e-39
Identity = 104/206 (50.49%), Postives = 132/206 (64.08%), Query Frame = 0

Query: 21  MGEEKEGEKSSLGSEKKERRRKKSLFEWSKGEEVNLVKKLIEFRTKKMGDEEFYPFLRNG 80
           M E KEG K S GS KK+RR  KSLFEWSKGEE+NL+KKL+EF TK +  EEFYPFLRNG
Sbjct: 1   MEEGKEGRKRSTGSGKKKRR--KSLFEWSKGEELNLLKKLVEFNTKNISREEFYPFLRNG 60

Query: 81  SLAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEI-------FELSNRLWG 140
           SLAEVS+ QIF KIQ+LK EYL++KLELRKMR +++K E+DD+        FELSN +WG
Sbjct: 61  SLAEVSRTQIFEKIQELKREYLKQKLELRKMRKRNVKMEDDDDFNNKRDEGFELSNEVWG 120

Query: 141 EVETTGSTSTSKALDVCSRSYFEGFFDGHGLHVQLFTPSFLHSTNKDIHHLFSLQNHHFL 200
           +V+ T   S SK L+                           +  KDI  LF+L++  FL
Sbjct: 121 KVDETERASISKVLE--------------------------DAAKKDIDRLFNLEHQAFL 178

Query: 201 IKANLKAQLAQLKYHIIQHPYNNPTN 220
            K+ L ++L +LK  IIQ P  +PT+
Sbjct: 181 FKSKLVSKLVKLKNDIIQAPITDPTH 178

BLAST of ClCG04G000040 vs. ExPASy TrEMBL
Match: A0A200Q8S2 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_497g13 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.5e-04
Identity = 30/116 (25.86%), Postives = 72/116 (62.07%), Query Frame = 0

Query: 24  EKEGEKSSLGSEKKERRRKKSLFE--WSKGEEVNLVKKLIEFRTKKMGDEEFYPFLRNGS 83
           EK  +K++   E++ +++K   F+  WS+ +E+ ++K ++++  K +   EFY  ++N  
Sbjct: 87  EKRRKKNNDSVEEESKKKKPIPFQRVWSEEDEIIILKGMVKYNDKGLDVNEFYTSIKNLL 146

Query: 84  LAEVSKIQIFNKIQQLKNEYLEKKLELRKMRIKHLKYENDDEIFELSNRLWGEVET 138
             EV+K Q+ +KI++LK +Y++  L  ++ +  +    +D +++ELS ++W  +++
Sbjct: 147 HVEVTKEQLNDKIRRLKGKYIKNALNEKEGKEMNFPKPHDAKLYELSKKIWSPIKS 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0054121.13.2e-6567.77hypothetical protein E6C27_scaffold131G00330 [Cucumis melo var. makuwa][more]
KAG6585881.11.6e-4555.38hypothetical protein SDJN03_18614, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49711.18.7e-3950.49hypothetical protein Csa_018385 [Cucumis sativus][more]
KAG6575378.13.4e-1150.55hypothetical protein SDJN03_26017, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022158998.11.6e-0826.42probable transcription factor At4g01260 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UKP81.5e-6567.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KPQ54.2e-3950.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G078280 PE=3 SV=1[more]
A0A200Q8S27.5e-0425.86Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_497g13 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..114
IPR007592GLABROUS1 enhancer-binding protein familyPFAMPF04504DUF573coord: 48..133
e-value: 3.4E-11
score: 43.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G000040.2ClCG04G000040.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated