ClCG03G010520 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G010520
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
Location	CG_Chr03: 19020765 .. 19022075 (-)
RNA-Seq Expression	ClCG03G010520
Synteny	ClCG03G010520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGGCTGCAACAAGCAATAGAAAAGCTAAAATTGGAAGTGGGAAGATTGATCAATAATCCACCAATAATCAACCAAGAAGCTCCTACCTTAAACCAAGAAAATCTGGACAACAGAAGGCAGCTTCAAGATATTCAGCAAAGGCAAGGAAATAACCAGCAAGTCTTACCAAGAAATCAAGAACAGCACTTTAATCTTCTGCACAATCAAGAACAATTCGACAATCCAATCCGCAGCCAAGAACGTGGGAATTTCCATCAAGATTTTCATGTGTGATCAACAAAATCGCCAAAAATATCACAGGCGTGATCAACGTGCTCAAGGGCTTCAAGTGGATCCACCCCACCATTTACAAGGGCTTCAAGAAAGATCAAGAAGTCCACCAAGACCCTTCATTCAAAGAAATCAACTGGGTATGAACAATTATCATCCAGTTTTTTAACAACACCATCCTCCTCATAGACCTTTTCTTCAAAAATGGGTTGGTTTTGATCCTGACTCTTACGGTGAGAAAGTAAACAACCATCAATTTCAATATTACCAAAAGATTCAAGGAAACAGCCCTTACAATTTCATAAACAAGGTAAAACCTACAATTCCTTCCGAGCAGCAAACAAATACCACAAAATGTGGTTGGGTTTGATTCTGTAACATCAAAGGAAGAAGAAGTTGGTTGGCAAGGTTTTTCTTGGTTTTCATATGAACATCATGAGAATCAACATCGATTCAAGAATTTCAAAGAATGGGTTCAAGAATCGTTTCAAGATCAAATGGGCATTCAACCAAATGTTCAAGAACACGTTGTTGTCCTTCAAGAACTTCAAGGCAACCCACATCGAATCCAAAATCAAATGGCTATGCTGCAAGAACATCAAGATAGGAGTAAAAGTCTTAAATGTTTTAGGTTGTTATTCGAATATGCTCCCAAAGGAACCAATTTTGACCGTTGTTGCTTGTCTCAATGTGAAAGACCCTTTTCTAACGCCACTTGAGAAGAAAGATTCTACAAAAACTGCAAAATCCCAATTTCCACAAGATCATAGTGATCACCTTGCTATTATGTGAGCCTATGGGGGATGGAAAGAAATTGAGAGGAACTTTGGAGGATATAACTTCGATTTGAATAACTTTCTTTCTGTACAATTGGTGAAGGATATGGATTCACTAAGGAAGCTGCTTTTTTCTTTGCTTAAAGATATTGGCTTGGTCAAGGGGTTCTTCAACACCTACAACATTTCGAGTCTTGATGAACTTGATGAAAATTCTATGTCTTGGACTTTTTTCATAATATTTTTGTTTAAGATGTAG

mRNA sequence

ATGGCCGGGCTGCAACAAGCAATAGAAAAGCTAAAATTGGAAGTGGGAAGATTGATCAATAATCCACCAATAATCAACCAAGAAGCTCCTACCTTAAACCAAGAAAATCTGGACAACAGAAGGCAGCTTCAAGATATTCAGCAAAGGCAAGGAAATAACCAGCAACCAAGAACGTGGGAATTTCCATCAAGATTTTCATGTGTGATCAACAAAATCGCCAAAAATATCACAGGCGTGATCAACGTGCTCAAGGGCTTCAAGTGGATCCACCCCACCATTTACAAGGGCTTCAAGAAAGATCAAGAAGTCCACCAAGACCCTTCATTCAAAGAAATCAACTGGGAAGAAGAAGTTGGTTGGCAAGGTTTTTCTTGGTTTTCATATGAACATCATGAGAATCAACATCGATTCAAGAATTTCAAAGAATGGGTTCAAGAATCGTTTCAAGATCAAATGGGCATTCAACCAAATGTTCAAGAACACGTTGTTGTCCTTCAAGAACTTCAAGGCAACCCACATCGAATCCAAAATCAAATGGCTATGCTGCAAGAACATCAAGATAGGAACCCTTTTCTAACGCCACTTGAGAAGAAAGATTCTACAAAAACTGCAAAATCCCAATTTCCACAAGATCATAGTGATCACCTTGCTATTATGAACTTTGGAGGATATAACTTCGATTTGAATAACTTTCTTTCTGTACAATTGGTGAAGGATATGGATTCACTAAGGAAGCTGCTTTTTTCTTTGCTTAAAGATATTGGCTTGGTCAAGGGGTTCTTCAACACCTACAACATTTCGAGTCTTGATGAACTTGATGAAAATTCTATGTCTTGGACTTTTTTCATAATATTTTTGTTTAAGATGTAG

Coding sequence (CDS)

ATGGCCGGGCTGCAACAAGCAATAGAAAAGCTAAAATTGGAAGTGGGAAGATTGATCAATAATCCACCAATAATCAACCAAGAAGCTCCTACCTTAAACCAAGAAAATCTGGACAACAGAAGGCAGCTTCAAGATATTCAGCAAAGGCAAGGAAATAACCAGCAACCAAGAACGTGGGAATTTCCATCAAGATTTTCATGTGTGATCAACAAAATCGCCAAAAATATCACAGGCGTGATCAACGTGCTCAAGGGCTTCAAGTGGATCCACCCCACCATTTACAAGGGCTTCAAGAAAGATCAAGAAGTCCACCAAGACCCTTCATTCAAAGAAATCAACTGGGAAGAAGAAGTTGGTTGGCAAGGTTTTTCTTGGTTTTCATATGAACATCATGAGAATCAACATCGATTCAAGAATTTCAAAGAATGGGTTCAAGAATCGTTTCAAGATCAAATGGGCATTCAACCAAATGTTCAAGAACACGTTGTTGTCCTTCAAGAACTTCAAGGCAACCCACATCGAATCCAAAATCAAATGGCTATGCTGCAAGAACATCAAGATAGGAACCCTTTTCTAACGCCACTTGAGAAGAAAGATTCTACAAAAACTGCAAAATCCCAATTTCCACAAGATCATAGTGATCACCTTGCTATTATGAACTTTGGAGGATATAACTTCGATTTGAATAACTTTCTTTCTGTACAATTGGTGAAGGATATGGATTCACTAAGGAAGCTGCTTTTTTCTTTGCTTAAAGATATTGGCTTGGTCAAGGGGTTCTTCAACACCTACAACATTTCGAGTCTTGATGAACTTGATGAAAATTCTATGTCTTGGACTTTTTTCATAATATTTTTGTTTAAGATGTAG

Protein sequence

MAGLQQAIEKLKLEVGRLINNPPIINQEAPTLNQENLDNRRQLQDIQQRQGNNQQPRTWEFPSRFSCVINKIAKNITGVINVLKGFKWIHPTIYKGFKKDQEVHQDPSFKEINWEEEVGWQGFSWFSYEHHENQHRFKNFKEWVQESFQDQMGIQPNVQEHVVVLQELQGNPHRIQNQMAMLQEHQDRNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIMNFGGYNFDLNNFLSVQLVKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDELDENSMSWTFFIIFLFKM

Homology

[Close]

BLAST of ClCG03G010520 vs. NCBI nr
Match: XP_038892223.1 (DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-19
Identity = 59/95 (62.11%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD  + AKSQF QDHSDHLAI+           NFGGY+F   NFLSVQ 
Sbjct: 795 RDPFLTPLEKKDVAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNFGGYDFCWKNFLSVQS 854

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 855 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 889

[Close]

BLAST of ClCG03G010520 vs. NCBI nr
Match: XP_011655799.1 (DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Cucumis sativus] >KGN52121.1 hypothetical protein Csa_008914 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-19
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 793 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGAWKEAERNYGGYDFCWKNFLSIQS 852

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 853 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 887

[Close]

BLAST of ClCG03G010520 vs. NCBI nr
Match: XP_008446653.1 (PREDICTED: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-19
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 845 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQS 904

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 905 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 939

[Close]

BLAST of ClCG03G010520 vs. NCBI nr
Match: TYK09146.1 (DExH-box ATP-dependent RNA helicase DExH5 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-19
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 766 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQS 825

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 826 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 860

[Close]

BLAST of ClCG03G010520 vs. NCBI nr
Match: KAA0034595.1 (DExH-box ATP-dependent RNA helicase DExH5 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-19
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 795 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQS 854

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 855 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 889

[Close]

BLAST of ClCG03G010520 vs. ExPASy Swiss-Prot
Match: F4IM84 (DExH-box ATP-dependent RNA helicase DExH5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g01130 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.5e-13
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIMN-FGG----------YNFDLNNFLSVQL 247
           R+PFLTP +KKD  + AKSQF +DHSDHLA++  + G          Y++   NFLS+Q 
Sbjct: 739 RDPFLTPQDKKDLAEAAKSQFSRDHSDHLALVRAYEGWKKAEEESAVYDYCWKNFLSIQS 798

Query: 248 VKDMDSLRKLLFSLLKDIGLVKG 260
           ++ +DSLRK  FSLLKD GL+ G
Sbjct: 799 LRAIDSLRKEFFSLLKDTGLIDG 821

[Close]

BLAST of ClCG03G010520 vs. ExPASy Swiss-Prot
Match: F4HYJ7 (DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana OX=3702 GN=At1g48650 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.5e-09
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFP-QDHSDHLAIM-----------NFGGYNFDLNNFLSVQ 247
           R+PFL P +KKD  +TA+S+F  +D+SDHL ++              GY++   NFLS Q
Sbjct: 819 RDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSSQ 878

Query: 248 LVKDMDSLRKLLFSLLKDIGLV 258
            +K MDS+RK  F+LLK+  L+
Sbjct: 879 TLKAMDSMRKQFFNLLKEASLI 900

[Close]

BLAST of ClCG03G010520 vs. ExPASy Swiss-Prot
Match: F4ILR7 (DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana OX=3702 GN=At2g35920 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 7.2e-04
Identity = 35/96 (36.46%), Postives = 48/96 (50.00%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDH-SDHLAIMN-FGGY----------NFDLNNFLSVQ 247
           R+PF+ PL +K+    AK  F  D  SDH+A++  + GY          +F   NFLS  
Sbjct: 744 RSPFVLPLNRKEEADEAKRYFAGDSCSDHIALLKAYEGYRDAKRGGNEKDFCWQNFLSPV 803

Query: 248 LVKDMDSLRKLLFSLLKDIGLV-KGFFNTYNISSLD 271
            ++ M+ +R     LL DIG V K   N YN  S D
Sbjct: 804 TLRMMEDMRNQFLDLLSDIGFVDKSKPNAYNQYSYD 839

[Close]

BLAST of ClCG03G010520 vs. ExPASy TrEMBL
Match: A0A5A7SZF7 (DExH-box ATP-dependent RNA helicase DExH5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G006110 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.5e-20
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 795 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQS 854

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 855 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 889

[Close]

BLAST of ClCG03G010520 vs. ExPASy TrEMBL
Match: A0A5D3CFK3 (DExH-box ATP-dependent RNA helicase DExH5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001370 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.5e-20
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 766 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQS 825

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 826 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 860

[Close]

BLAST of ClCG03G010520 vs. ExPASy TrEMBL
Match: A0A0A0KWI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611030 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.5e-20
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 793 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGAWKEAERNYGGYDFCWKNFLSIQS 852

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 853 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 887

[Close]

BLAST of ClCG03G010520 vs. ExPASy TrEMBL
Match: A0A1S3BFL6 (DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489319 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.5e-20
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 845 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQS 904

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 905 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 939

[Close]

BLAST of ClCG03G010520 vs. ExPASy TrEMBL
Match: A0A1S3BF36 (DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489319 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.5e-20
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIM-----------NFGGYNFDLNNFLSVQL 247
           R+PFLTPLEKKD+ + AKSQF QDHSDHLAI+           N+GGY+F   NFLS+Q 
Sbjct: 845 RDPFLTPLEKKDAAEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQS 904

Query: 248 VKDMDSLRKLLFSLLKDIGLVKGFFNTYNISSLDE 272
           +K +DSLRK  FSLL+D GLV G+ +TYN  SLDE
Sbjct: 905 MKAIDSLRKEFFSLLRDTGLVDGYSDTYNAWSLDE 939

[Close]

BLAST of ClCG03G010520 vs. TAIR 10
Match: AT2G01130.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-14
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDHSDHLAIMN-FGG----------YNFDLNNFLSVQL 247
           R+PFLTP +KKD  + AKSQF +DHSDHLA++  + G          Y++   NFLS+Q 
Sbjct: 739 RDPFLTPQDKKDLAEAAKSQFSRDHSDHLALVRAYEGWKKAEEESAVYDYCWKNFLSIQS 798

Query: 248 VKDMDSLRKLLFSLLKDIGLVKG 260
           ++ +DSLRK  FSLLKD GL+ G
Sbjct: 799 LRAIDSLRKEFFSLLKDTGLIDG 821

[Close]

BLAST of ClCG03G010520 vs. TAIR 10
Match: AT1G48650.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-10
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFP-QDHSDHLAIM-----------NFGGYNFDLNNFLSVQ 247
           R+PFL P +KKD  +TA+S+F  +D+SDHL ++              GY++   NFLS Q
Sbjct: 819 RDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSSQ 878

Query: 248 LVKDMDSLRKLLFSLLKDIGLV 258
            +K MDS+RK  F+LLK+  L+
Sbjct: 879 TLKAMDSMRKQFFNLLKEASLI 900

[Close]

BLAST of ClCG03G010520 vs. TAIR 10
Match: AT1G48650.2 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-10
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFP-QDHSDHLAIM-----------NFGGYNFDLNNFLSVQ 247
           R+PFL P +KKD  +TA+S+F  +D+SDHL ++              GY++   NFLS Q
Sbjct: 819 RDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSSQ 878

Query: 248 LVKDMDSLRKLLFSLLKDIGLV 258
            +K MDS+RK  F+LLK+  L+
Sbjct: 879 TLKAMDSMRKQFFNLLKEASLI 900

[Close]

BLAST of ClCG03G010520 vs. TAIR 10
Match: AT5G04895.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.7e-06
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQF-PQDHSDHLAIMN-FGG----------YNFDLNNFLSVQ 247
           R+PFL P +KKD   +AK +F  +D+SDH+A++  F G          Y F   NFLS Q
Sbjct: 780 RDPFLLPQDKKDLALSAKLRFSAKDYSDHMALVRAFEGWKDAEREGSAYEFCWRNFLSAQ 839

Query: 248 LVKDMDSLRKLLFSLLKDIGLV 258
            ++ + SLRK    +LK+ GLV
Sbjct: 840 TLQAIHSLRKQFNYILKEAGLV 861

[Close]

BLAST of ClCG03G010520 vs. TAIR 10
Match: AT2G35920.1 (RNA helicase family protein )

HSP 1 Score: 46.2 bits (108), Expect = 5.1e-05
Identity = 35/96 (36.46%), Postives = 48/96 (50.00%), Query Frame = 0


Query: 188 RNPFLTPLEKKDSTKTAKSQFPQDH-SDHLAIMN-FGGY----------NFDLNNFLSVQ 247
           R+PF+ PL +K+    AK  F  D  SDH+A++  + GY          +F   NFLS  
Sbjct: 744 RSPFVLPLNRKEEADEAKRYFAGDSCSDHIALLKAYEGYRDAKRGGNEKDFCWQNFLSPV 803

Query: 248 LVKDMDSLRKLLFSLLKDIGLV-KGFFNTYNISSLD 271
            ++ M+ +R     LL DIG V K   N YN  S D
Sbjct: 804 TLRMMEDMRNQFLDLLSDIGFVDKSKPNAYNQYSYD 839

The following BLAST results are available for this feature:

BLAST of ClCG03G010520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892223.1	1.2e-19	62.11	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Benincasa hispida]	[more]
XP_011655799.1	1.5e-19	60.00	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Cucumis sativus] >KGN5...	[more]
XP_008446653.1	1.5e-19	60.00	PREDICTED: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X2 [...	[more]
TYK09146.1	1.5e-19	60.00	DExH-box ATP-dependent RNA helicase DExH5 [Cucumis melo var. makuwa]	[more]
KAA0034595.1	1.5e-19	60.00	DExH-box ATP-dependent RNA helicase DExH5 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG03G010520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IM84	6.5e-13	50.60	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial OS=Arabidopsis thaliana...	[more]
F4HYJ7	7.5e-09	42.68	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
F4ILR7	7.2e-04	36.46	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana OX=3702 GN=At2...	[more]

BLAST of ClCG03G010520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZF7	7.5e-20	60.00	DExH-box ATP-dependent RNA helicase DExH5 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3CFK3	7.5e-20	60.00	DExH-box ATP-dependent RNA helicase DExH5 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0KWI1	7.5e-20	60.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611030 PE=4 SV=1	[more]
A0A1S3BFL6	7.5e-20	60.00	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X2 OS=Cucumis m...	[more]
A0A1S3BF36	7.5e-20	60.00	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1 OS=Cucumis m...	[more]

BLAST of ClCG03G010520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01130.1	4.6e-14	50.60	DEA(D/H)-box RNA helicase family protein	[more]
AT1G48650.1	5.3e-10	42.68	DEA(D/H)-box RNA helicase family protein	[more]
AT1G48650.2	5.3e-10	42.68	DEA(D/H)-box RNA helicase family protein	[more]
AT5G04895.1	2.7e-06	41.46	DEA(D/H)-box RNA helicase family protein	[more]
AT2G35920.1	5.1e-05	36.46	RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	coord: 188..271
None	No IPR available	PANTHER	PTHR18934:SF146	DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL	coord: 188..271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G010520.1	ClCG03G010520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding