ClCG03G009960 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG03G009960
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase domain-containing protein
Location	CG_Chr03: 16455549 .. 16458532 (+)
RNA-Seq Expression	ClCG03G009960
Synteny	ClCG03G009960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACATTGATGGATCAACTTGATCTAGACGAGGGCATGGAGAGTCTCATGGCACAGTTTCTTAATGGGCTAAACAGGGACATTGTTGACCAGGTTGTTAAGAAAGGAAAAGAGAAGGTTGACGACTCTAATGTGTGAAATCCTTTAAAATGCCGGAAATGTCAAGGGATAGGTCACTTTAGTAGAGATTGGCCTAATAGGAAAATAATGACCATTAGAGAATGAGAAATTGTGAGAGAAGATGAAGAGGAAAATGAGGTTGTAAAGGAAGAAAATGATGAGAGTGAGAGTGAGGAGTTTAGTGAAGAGGATCCTACACATATGTCTTCAGTCTCTAGGAGAGCTTTGAACACCCAATTTAAGGAGGATAGTTTAGACCAACGAGAGAACTTGTTTCACACTAGATGCCTTGTTCAATCTTTACCTTGTAGTATGGTTATCGTGCACCAATGTTGTGAGTTCTATTCTGGTCAAGACACTTAATTTAGAGAGTAACAACATTGTAGACCATACAAGCTTCAATGGTTCAATGATTGCTAGGAAGTCAAGGTGACTAAGCAAGCTCTTGTTTCATTTACCATTGGAAAGTATATCTTCACCATGGTAGAAAACTCACAGTAGTTTGGGACCAAATCACATGACTCTCTTGCTCCCAACACTCATGATGATAACAGATGAACCTCAATCATGCGATATGAACAATAAGAAGGAGTCATCTATGCTGTCCAAGGATACACTAACCAAAGAAGAAAAATTATGTGATGTCAAGTGAAATTTATGAAGAATCAAACTTCATTTATGGAACAAAGAGTTTGAAGTTTGATATGAACGGATGAACCTCAAGCATGCAATATGAACAACAAGAAGAAGTCATCTATGCTGTCCAAGTTTACACTAACCAAAGAAGAAAAATTATGTGAAGTCAAGTGAAATTTATGAAGAATCAAACTTCATTTATGGAACAAAGAGTTCAAGTGGGGTTCATAGCTCAAAGTTTACATAGCTCAAAATGATGGGTTGCTGATTAAAAAAAAATATACTTTTGGATTTATTGTATTAATTAAATGTAATTTTAGTCTTTAAGTCATTTTATTTGTTTTATGTTACATTTAGATCATGGCTGATAATGGTCATTAATTATGAGTGTTACAACTCTTTGAATGCCTCAAAAAATGCCTAGGGTTAGATTTTGAGGCCTACATAATGCCATGTAATTGTTCACAAAAGGAGACATGGAAGAGATTTAAAAATGTAGTAAAAGAGCCTTTGAGCTTTTCTTTTAGTCTTGTGCTATGGTTCTTTTGCAATTCTATGGTGTTTAGATTGCATGTTCAGAATCCGTCATCTAGCCATTCTTAGAGTCTGAGATCATCTTGATTTGGGTTTTGGAGTTTGAGATTGTCAAGAGATTGATTAGAGTCTGAGGGCCTTTCTTTGGAGGGGTCGTTTAGATGGGAGGGGGGGTAAGGGATGAAGGTTGCGTGGGATTGTGTGTTTGCCTGTTAAGGAGATAGGGCTTGGGATTCATCATTCCTATTATTGGAATTTGGTGGCCATCCTCAAGTAGTTATGGTTGATTTTGATTAGATCTAGTTTGTTGTGGGTAGTGTGGGTGGAGGAGTATGTGTTGGGTTGATGTTCCCTGTGGTCGATTAGGGTGGGTGAGGGGATGTCTTGGAGTCTTTGTGCAATTTTGGTGCGGGATTCCTTGCTTCCCTTGGTGAGGTTGGAGGTGGGTGATGGTTGGGTTTGCCATGTTTGGACTGATCCTTGGCTTCCTAAGGGTCCTATCTTGGAGCGGTATGGTGAGTGGATGATTTATGATGCAGCTACTGTGAAGGAGGCTAACCTGTCATATTTCATTTCTACTACTGAATTTTGGTAGTAGCTATGTGTTACTTGGGAATTGACGGAAATCTTTGGGTTGGTTGAGGGTGTTAGAGTGCGTATGGGGAGTGAGGATTGGTGGGTGTGGGTTCCAGATAGTTCTGGTCAGTTCTCTGTTAAGAGTGCTTGGGACGTGTTAAGGCCTCGGCGCCCTAAGGTTTGGGGTAATATTCCTCGCCATTCCTGTTGTGCGTGGTTGGCTGTCAGGGATAGGTTTGGCACGAGGGATTGCTTGAGTCGTTAGGGTGGGGAATCTTCTCTTTTGTGTCCGCTGTTTGGGGATGGGACTAAGTCTAGGGATCATCAGTTTTTTTATTGTCCCTTTCGGCTGGAGGTGTGGGAGGGGGTTATTCGGTTCTTGGTTCTTTGCATAGTGTGCCTGGGGGATATTGTTGGAGTCATTGTGTCGGGTTGGCCATGGTAAGGGTACTAGGAGAAAGCTATGGAGGGTCTATAGATGTGCTTCTATTTATTTTCTGTGGCAGGAGAGGTATCGTAGGCTACATGGTGCCTCGTTTAGGACTGCCTCGACGATCTTACAGCTTATTATTTCTACTGTTTGGGCTTGTGCTCTGTCGTGGTTGGAGGATGTTTTGGAGTTTCTTTAGGTTTTCTTTTTGTTTGTTGTTTCACTTAGCCCGAGGCCGTGGAGTTTTTTCTTTGTTTGGCCTTCCTTGGTTTGTCTGCTTTGGTTGGCTCCTTTGGAGGTTGTTTGGGTTCTAGTCTCTCTTTTTTATTGTTGGCCCTGTTTTAGGTCTTCTTTTCAATTTGGTGTTGTTTGGTTTGGTCGTTTTAGTGTTTCTTTGTTTGGTCTGTTTGGCCTTTTCTAGTCTTCTTTGTTTGGCCTTGGCCCCGGGCTGTGGGGCCTTGATAAGTAACACTCGAGTATTTGGATCTAACAACCTTGTTCACAAACAAGACCTTTAGATATCAAACTCAAACACCCCAGATCAAGATGATTTCAGCCCCTAAGAATGGCTTAACAACTGATTATTTAGACGATCAACAAAACCACGGATTGGACAAAGCTTGATGCTCCCATCGCCCTTGATCTTCAAACCACTCCACAAGCAATATCATCAAGTCAAGCATGA

mRNA sequence

ATGGATACATTGATGGATCAACTTGATCTAGACGAGGGCATGGAGAGTCTCATGGCACAGTTTCTTAATGGGCTAAACAGGGACATTGTTGACCAGGTTGTTAAGAAAGGAAAAGAGAAGGTTGACGACTCTAATGTAGAAGATGAAGAGGAAAATGAGGTTGTAAAGGAAGAAAATGATGAGAGTGAGAGTGAGGAGTTTAGTGAAGAGGATCCTACACATATGTCTTCAGTCTCTAGGAGAGCTTTGAACACCCAATTTAAGGAGGATAGTTTAGACCAACGAGAGAACTTGTTTCACACTAGATGCCTTGTTCAATCTTTACCTTGTAGTATGGAAGTCAAGGTGACTAAGCAAGCTCTTGTTTCATTTACCATTGGAAAGTATATCTTCACCATGGTAGAAAACTCACAGTTGCGTGGGATTGTGTGTTTGCCTGTTAAGGAGATAGGGCTTGGGATTCATCATTCCTATTATTGGAATTTGGTGGCCATCCTCAAGGTGGGTGAGGGGATGTCTTGGAGTCTTTGTGCAATTTTGGTGCGGGATTCCTTGCTTCCCTTGGTGAGGTTGGAGGTGGGTGATGGTTGGGTTTGCCATGTTTGGACTGATCCTTGGCTTCCTAAGGGTCCTATCTTGGAGCGGTATGGTGAGTGGATGATTTATGATGCAGCTACTGTGAAGGAGGCTAACCTAGTGCGTATGGGGAGTGAGGATTGGTGGGTGTGGGTTCCAGATAGTTCTGGTCAGTTCTCTGTTAAGAGTGCTTGGGACGTGTTAAGGCCTCGGCGCCCTAAGGTTTGGGGTAATATTCCTCGCCATTCCTGTTGTGCGTGGTTGGCTGTCAGGGATAGGTTTGGCACGAGGGATTGCTTGAGTCGTGTGGGAGGGGGTTATTCGGTTCTTGGTTCTTTGCATAGTGTGCCTGGGGGATATTGTTGGAGTCATTGTGTCGGGTTGGCCATGGAGAGGTATCGTAGGCTACATGGTGCCTCGTTTAGGACTGCCTCGACGATCTTACAGCTTATTATTTCTACTGTTTGGGCTTGTGCTCTGTCGTGGTTGGAGGATCCCGAGGCCGTGGAGTTTTTTCTTTGTTTGGCCTTCCTTGGTTTGTCTGCTTTGACGATCAACAAAACCACGGATTGGACAAAGCTTGATGCTCCCATCGCCCTTGATCTTCAAACCACTCCACAAGCAATATCATCAAGTCAAGCATGA

Coding sequence (CDS)

ATGGATACATTGATGGATCAACTTGATCTAGACGAGGGCATGGAGAGTCTCATGGCACAGTTTCTTAATGGGCTAAACAGGGACATTGTTGACCAGGTTGTTAAGAAAGGAAAAGAGAAGGTTGACGACTCTAATGTAGAAGATGAAGAGGAAAATGAGGTTGTAAAGGAAGAAAATGATGAGAGTGAGAGTGAGGAGTTTAGTGAAGAGGATCCTACACATATGTCTTCAGTCTCTAGGAGAGCTTTGAACACCCAATTTAAGGAGGATAGTTTAGACCAACGAGAGAACTTGTTTCACACTAGATGCCTTGTTCAATCTTTACCTTGTAGTATGGAAGTCAAGGTGACTAAGCAAGCTCTTGTTTCATTTACCATTGGAAAGTATATCTTCACCATGGTAGAAAACTCACAGTTGCGTGGGATTGTGTGTTTGCCTGTTAAGGAGATAGGGCTTGGGATTCATCATTCCTATTATTGGAATTTGGTGGCCATCCTCAAGGTGGGTGAGGGGATGTCTTGGAGTCTTTGTGCAATTTTGGTGCGGGATTCCTTGCTTCCCTTGGTGAGGTTGGAGGTGGGTGATGGTTGGGTTTGCCATGTTTGGACTGATCCTTGGCTTCCTAAGGGTCCTATCTTGGAGCGGTATGGTGAGTGGATGATTTATGATGCAGCTACTGTGAAGGAGGCTAACCTAGTGCGTATGGGGAGTGAGGATTGGTGGGTGTGGGTTCCAGATAGTTCTGGTCAGTTCTCTGTTAAGAGTGCTTGGGACGTGTTAAGGCCTCGGCGCCCTAAGGTTTGGGGTAATATTCCTCGCCATTCCTGTTGTGCGTGGTTGGCTGTCAGGGATAGGTTTGGCACGAGGGATTGCTTGAGTCGTGTGGGAGGGGGTTATTCGGTTCTTGGTTCTTTGCATAGTGTGCCTGGGGGATATTGTTGGAGTCATTGTGTCGGGTTGGCCATGGAGAGGTATCGTAGGCTACATGGTGCCTCGTTTAGGACTGCCTCGACGATCTTACAGCTTATTATTTCTACTGTTTGGGCTTGTGCTCTGTCGTGGTTGGAGGATCCCGAGGCCGTGGAGTTTTTTCTTTGTTTGGCCTTCCTTGGTTTGTCTGCTTTGACGATCAACAAAACCACGGATTGGACAAAGCTTGATGCTCCCATCGCCCTTGATCTTCAAACCACTCCACAAGCAATATCATCAAGTCAAGCATGA

Protein sequence

MDTLMDQLDLDEGMESLMAQFLNGLNRDIVDQVVKKGKEKVDDSNVEDEEENEVVKEENDESESEEFSEEDPTHMSSVSRRALNTQFKEDSLDQRENLFHTRCLVQSLPCSMEVKVTKQALVSFTIGKYIFTMVENSQLRGIVCLPVKEIGLGIHHSYYWNLVAILKVGEGMSWSLCAILVRDSLLPLVRLEVGDGWVCHVWTDPWLPKGPILERYGEWMIYDAATVKEANLVRMGSEDWWVWVPDSSGQFSVKSAWDVLRPRRPKVWGNIPRHSCCAWLAVRDRFGTRDCLSRVGGGYSVLGSLHSVPGGYCWSHCVGLAMERYRRLHGASFRTASTILQLIISTVWACALSWLEDPEAVEFFLCLAFLGLSALTINKTTDWTKLDAPIALDLQTTPQAISSSQA

Homology

[Close]

BLAST of ClCG03G009960 vs. NCBI nr
Match: KAA0059752.1 (F17F8.5 [Cucumis melo var. makuwa] >TYJ99767.1 F17F8.5 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 9.7e-28
Identity = 97/257 (37.74%), Postives = 121/257 (47.08%), Query Frame = 0


Query: 143 VCLPVKEIGLGIHHSYYWNLVAILKV-------------------------------GEG 202
           VCLP +E GLGI     WN+ + LK+                                 G
Sbjct: 503 VCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVG 562

Query: 203 MSWSLCAIL-VRDSLLPLVRLEVGDGWVCHVWTDPWLPKGPILERYGEWMIYDAATVKEA 262
            SW L AIL  R+ L  LV ++VG+   C VW D WL    ILE+ GE ++YDAA+ +EA
Sbjct: 563 RSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREA 622

Query: 263 NLVRMGSEDW-WVWVPDSSGQFSVKSAWDVLRPRRPKV------W--GNIPRHSCCAWLA 322
            L      D  W+W     G FS+ SAW+ +RPR  +V      W  GNIP++S CAWLA
Sbjct: 623 RLSDFIDPDGEWLW---PRGGFSIASAWEAVRPRGGQVLWDGLLWGGGNIPKYSFCAWLA 682

Query: 323 VRDRFGTRDCLSRVGGGYSVLGSLHSVPGGYCWSHCVGLAM-ERYRRLHGASFRTASTIL 358
           ++DR GTRD L R     SV   L  V     W   +     ER  RLHG   R    I 
Sbjct: 683 IKDRLGTRDRLHRY--WESVRRKLWRV----LWCATIYFIWNERNHRLHGGQARDPIVIF 742

[Close]

BLAST of ClCG03G009960 vs. NCBI nr
Match: KAA0062318.1 (uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 5.3e-26
Identity = 95/286 (33.22%), Postives = 124/286 (43.36%), Query Frame = 0


Query: 143 VCLPVKEIGLGIHHSYYWNLVAILKV-------------------------------GEG 202
           VCLP +E GLGI     WN+ + LK+                                 G
Sbjct: 609 VCLPFEEGGLGIRDGPSWNIASTLKILWLMLTNSGSLWVAWVEAYILKGRSLWDVDSRVG 668

Query: 203 MSWSLCAIL-VRDSLLPLVRLEVGDGWVCHVWTDPWLPKGPILERYGEWMIYDAATVKEA 262
            SW L AIL  R+ L  LVR++VG+G    VW DPWLP+G ILE+ GE ++YDAA+ ++A
Sbjct: 669 KSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKA 728

Query: 263 NLVR------------------------------MGSEDWWVWVPDSSGQFSVKSAWDVL 322
            L                                +   D WVWVP   G FS+ SAW+ +
Sbjct: 729 RLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAV 788

Query: 323 RPRRPKV------W--GNIPRHSCCAWLAVRDRFGTRDCLSRVGGGYSVLGSLHSVPGGY 358
           RPR  +V      W  GNI +H  CAWLA++DR GT D L R      +L  L       
Sbjct: 789 RPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILWFFGS-- 848

[Close]

BLAST of ClCG03G009960 vs. NCBI nr
Match: XP_008452126.1 (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 5.3e-26
Identity = 81/208 (38.94%), Postives = 107/208 (51.44%), Query Frame = 0


Query: 171 GMSWSLCAIL-VRDSLLPLVRLEVGDGWVCHVWTDPWLPKGPILERYGEWMIYDAATVKE 230
           G SW L AIL  ++ L   VR++VG+G  C VW DPWL +G ILER GE ++YDAA+ +E
Sbjct: 702 GRSWCLRAILRKQEKLKQHVRMKVGNGNRCRVWLDPWLQRGAILERVGERVLYDAASRRE 761

Query: 231 ANLVR-MGSEDWWVWVPDSSGQFSVKSAWDVLRPRRPKV------W--GNIPRHSCCAWL 290
           A+L   +G +  W+W     G FS+ SAW+ +RPR  +V      W  GNIP+HS CAWL
Sbjct: 762 ASLSNFIGPDGEWLW---PRGGFSIASAWEAIRPRGGRVLWDGLLWGGGNIPKHSFCAWL 821

Query: 291 AVRDRFGTRD------------CLSRVGGGYSVLGSLHSVP-GGYCWSHCVGLAMERYRR 350
           A++DR GTRD            C+   GG  S      S P GG  WS  + +    +R 
Sbjct: 822 AIKDRLGTRDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRI 881

Query: 351 LHGASFRTASTILQLIISTVWACALSWL 356
            H                  W   LSW+
Sbjct: 882 GH------------------WGVELSWI 888

[Close]

BLAST of ClCG03G009960 vs. NCBI nr
Match: TYK19523.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 5.3e-26
Identity = 81/208 (38.94%), Postives = 107/208 (51.44%), Query Frame = 0


Query: 171 GMSWSLCAIL-VRDSLLPLVRLEVGDGWVCHVWTDPWLPKGPILERYGEWMIYDAATVKE 230
           G SW L AIL  ++ L   VR++VG+G  C VW DPWL +G ILER GE ++YDAA+ +E
Sbjct: 750 GRSWCLRAILRKQEKLKQHVRMKVGNGNRCRVWLDPWLQRGAILERVGERVLYDAASRRE 809

Query: 231 ANLVR-MGSEDWWVWVPDSSGQFSVKSAWDVLRPRRPKV------W--GNIPRHSCCAWL 290
           A+L   +G +  W+W     G FS+ SAW+ +RPR  +V      W  GNIP+HS CAWL
Sbjct: 810 ASLSNFIGPDGEWLW---PRGGFSIASAWEAIRPRGGRVLWDGLLWGGGNIPKHSFCAWL 869

Query: 291 AVRDRFGTRD------------CLSRVGGGYSVLGSLHSVP-GGYCWSHCVGLAMERYRR 350
           A++DR GTRD            C+   GG  S      S P GG  WS  + +    +R 
Sbjct: 870 AIKDRLGTRDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRI 929

Query: 351 LHGASFRTASTILQLIISTVWACALSWL 356
            H                  W   LSW+
Sbjct: 930 GH------------------WGVELSWI 936

[Close]

BLAST of ClCG03G009960 vs. NCBI nr
Match: KAA0057642.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-25
Identity = 80/208 (38.46%), Postives = 107/208 (51.44%), Query Frame = 0


Query: 171 GMSWSLCAIL-VRDSLLPLVRLEVGDGWVCHVWTDPWLPKGPILERYGEWMIYDAATVKE 230
           G SW L AIL  ++ L   VR++VG+G  C VW DPWL +G ILE+ GE ++YDAA+ +E
Sbjct: 769 GRSWCLRAILRKQEKLKQHVRMKVGNGNRCRVWLDPWLQRGAILEQVGERVLYDAASRRE 828

Query: 231 ANLVR-MGSEDWWVWVPDSSGQFSVKSAWDVLRPRRPKV------W--GNIPRHSCCAWL 290
           A+L   +G +  W+W     G FS+ SAW+ +RPR  +V      W  GNIP+HS CAWL
Sbjct: 829 ASLSNFIGPDGEWLW---PRGGFSIASAWEAIRPRGGRVLWDGLLWGGGNIPKHSFCAWL 888

Query: 291 AVRDRFGTRD------------CLSRVGGGYSVLGSLHSVP-GGYCWSHCVGLAMERYRR 350
           A++DR GTRD            C+   GG  S      S P GG  WS  + +    +R 
Sbjct: 889 AIKDRLGTRDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRI 948

Query: 351 LHGASFRTASTILQLIISTVWACALSWL 356
            H                  W   LSW+
Sbjct: 949 GH------------------WGVELSWI 955

[Close]

BLAST of ClCG03G009960 vs. ExPASy TrEMBL
Match: A0A5A7UV01 (F17F8.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00020 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.7e-28
Identity = 97/257 (37.74%), Postives = 121/257 (47.08%), Query Frame = 0


Query: 143 VCLPVKEIGLGIHHSYYWNLVAILKV-------------------------------GEG 202
           VCLP +E GLGI     WN+ + LK+                                 G
Sbjct: 503 VCLPFEESGLGIRDGPSWNIASTLKILLLMLTNSGSLWVAWVKAYILKGRSLWDVDSRVG 562

Query: 203 MSWSLCAIL-VRDSLLPLVRLEVGDGWVCHVWTDPWLPKGPILERYGEWMIYDAATVKEA 262
            SW L AIL  R+ L  LV ++VG+   C VW D WL    ILE+ GE ++YDAA+ +EA
Sbjct: 563 RSWRLRAILRKREKLKHLVWMKVGNSNSCRVWLDSWLLGDAILEQVGERVMYDAASWREA 622

Query: 263 NLVRMGSEDW-WVWVPDSSGQFSVKSAWDVLRPRRPKV------W--GNIPRHSCCAWLA 322
            L      D  W+W     G FS+ SAW+ +RPR  +V      W  GNIP++S CAWLA
Sbjct: 623 RLSDFIDPDGEWLW---PRGGFSIASAWEAVRPRGGQVLWDGLLWGGGNIPKYSFCAWLA 682

Query: 323 VRDRFGTRDCLSRVGGGYSVLGSLHSVPGGYCWSHCVGLAM-ERYRRLHGASFRTASTIL 358
           ++DR GTRD L R     SV   L  V     W   +     ER  RLHG   R    I 
Sbjct: 683 IKDRLGTRDRLHRY--WESVRRKLWRV----LWCATIYFIWNERNHRLHGGQARDPIVIF 742

[Close]

BLAST of ClCG03G009960 vs. ExPASy TrEMBL
Match: A0A5A7V3Z0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00690 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-26
Identity = 95/286 (33.22%), Postives = 124/286 (43.36%), Query Frame = 0


Query: 143 VCLPVKEIGLGIHHSYYWNLVAILKV-------------------------------GEG 202
           VCLP +E GLGI     WN+ + LK+                                 G
Sbjct: 609 VCLPFEEGGLGIRDGPSWNIASTLKILWLMLTNSGSLWVAWVEAYILKGRSLWDVDSRVG 668

Query: 203 MSWSLCAIL-VRDSLLPLVRLEVGDGWVCHVWTDPWLPKGPILERYGEWMIYDAATVKEA 262
            SW L AIL  R+ L  LVR++VG+G    VW DPWLP+G ILE+ GE ++YDAA+ ++A
Sbjct: 669 KSWCLRAILRKREKLKHLVRMKVGNGNSFRVWLDPWLPEGAILEQVGERVMYDAASRRKA 728

Query: 263 NLVR------------------------------MGSEDWWVWVPDSSGQFSVKSAWDVL 322
            L                                +   D WVWVP   G FS+ SAW+ +
Sbjct: 729 RLSDFIDPDGEWLWPRVSLELIDLWERVQEVSPCLSVSDSWVWVPGRRGGFSIASAWEAV 788

Query: 323 RPRRPKV------W--GNIPRHSCCAWLAVRDRFGTRDCLSRVGGGYSVLGSLHSVPGGY 358
           RPR  +V      W  GNI +H  CAWLA++DR GT D L R      +L  L       
Sbjct: 789 RPRGGRVLWDGLLWGGGNIQKHFFCAWLAIKDRLGTIDRLHRWDSSVPMLCILWFFGS-- 848

[Close]

BLAST of ClCG03G009960 vs. ExPASy TrEMBL
Match: A0A5D3D7P6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00080 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-26
Identity = 81/208 (38.94%), Postives = 107/208 (51.44%), Query Frame = 0


Query: 171 GMSWSLCAIL-VRDSLLPLVRLEVGDGWVCHVWTDPWLPKGPILERYGEWMIYDAATVKE 230
           G SW L AIL  ++ L   VR++VG+G  C VW DPWL +G ILER GE ++YDAA+ +E
Sbjct: 750 GRSWCLRAILRKQEKLKQHVRMKVGNGNRCRVWLDPWLQRGAILERVGERVLYDAASRRE 809

Query: 231 ANLVR-MGSEDWWVWVPDSSGQFSVKSAWDVLRPRRPKV------W--GNIPRHSCCAWL 290
           A+L   +G +  W+W     G FS+ SAW+ +RPR  +V      W  GNIP+HS CAWL
Sbjct: 810 ASLSNFIGPDGEWLW---PRGGFSIASAWEAIRPRGGRVLWDGLLWGGGNIPKHSFCAWL 869

Query: 291 AVRDRFGTRD------------CLSRVGGGYSVLGSLHSVP-GGYCWSHCVGLAMERYRR 350
           A++DR GTRD            C+   GG  S      S P GG  WS  + +    +R 
Sbjct: 870 AIKDRLGTRDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRI 929

Query: 351 LHGASFRTASTILQLIISTVWACALSWL 356
            H                  W   LSW+
Sbjct: 930 GH------------------WGVELSWI 936

[Close]

BLAST of ClCG03G009960 vs. ExPASy TrEMBL
Match: A0A1S3BSI8 (uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-26
Identity = 81/208 (38.94%), Postives = 107/208 (51.44%), Query Frame = 0


Query: 171 GMSWSLCAIL-VRDSLLPLVRLEVGDGWVCHVWTDPWLPKGPILERYGEWMIYDAATVKE 230
           G SW L AIL  ++ L   VR++VG+G  C VW DPWL +G ILER GE ++YDAA+ +E
Sbjct: 702 GRSWCLRAILRKQEKLKQHVRMKVGNGNRCRVWLDPWLQRGAILERVGERVLYDAASRRE 761

Query: 231 ANLVR-MGSEDWWVWVPDSSGQFSVKSAWDVLRPRRPKV------W--GNIPRHSCCAWL 290
           A+L   +G +  W+W     G FS+ SAW+ +RPR  +V      W  GNIP+HS CAWL
Sbjct: 762 ASLSNFIGPDGEWLW---PRGGFSIASAWEAIRPRGGRVLWDGLLWGGGNIPKHSFCAWL 821

Query: 291 AVRDRFGTRD------------CLSRVGGGYSVLGSLHSVP-GGYCWSHCVGLAMERYRR 350
           A++DR GTRD            C+   GG  S      S P GG  WS  + +    +R 
Sbjct: 822 AIKDRLGTRDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRI 881

Query: 351 LHGASFRTASTILQLIISTVWACALSWL 356
            H                  W   LSW+
Sbjct: 882 GH------------------WGVELSWI 888

[Close]

BLAST of ClCG03G009960 vs. ExPASy TrEMBL
Match: A0A5A7UP65 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00070 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.5e-26
Identity = 80/208 (38.46%), Postives = 107/208 (51.44%), Query Frame = 0


Query: 171 GMSWSLCAIL-VRDSLLPLVRLEVGDGWVCHVWTDPWLPKGPILERYGEWMIYDAATVKE 230
           G SW L AIL  ++ L   VR++VG+G  C VW DPWL +G ILE+ GE ++YDAA+ +E
Sbjct: 769 GRSWCLRAILRKQEKLKQHVRMKVGNGNRCRVWLDPWLQRGAILEQVGERVLYDAASRRE 828

Query: 231 ANLVR-MGSEDWWVWVPDSSGQFSVKSAWDVLRPRRPKV------W--GNIPRHSCCAWL 290
           A+L   +G +  W+W     G FS+ SAW+ +RPR  +V      W  GNIP+HS CAWL
Sbjct: 829 ASLSNFIGPDGEWLW---PRGGFSIASAWEAIRPRGGRVLWDGLLWGGGNIPKHSFCAWL 888

Query: 291 AVRDRFGTRD------------CLSRVGGGYSVLGSLHSVP-GGYCWSHCVGLAMERYRR 350
           A++DR GTRD            C+   GG  S      S P GG  WS  + +    +R 
Sbjct: 889 AIKDRLGTRDRFHRWDSSVPLSCILCEGGMESRDHLFFSCPFGGDVWSRVLRIMASSHRI 948

Query: 351 LHGASFRTASTILQLIISTVWACALSWL 356
            H                  W   LSW+
Sbjct: 949 GH------------------WGVELSWI 955

[Close]

BLAST of ClCG03G009960 vs. TAIR 10
Match: AT5G16486.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.5e-05
Identity = 41/170 (24.12%), Postives = 65/170 (38.24%), Query Frame = 0


Query: 173 SW---SLCAILVRDSLLPLVRLEVGDGWVCHVWTDPWLPKGPILE--------------- 232
           SW   S+C +  R      V  +VG G  C+ W++ W   GP++                
Sbjct: 8   SWIWKSICKL--RPMAREFVVCKVGSGITCNFWSENWTNLGPLIHLTGDLGPRVSGLPRN 67

Query: 233 -------RYGEW-------------MIYDAATVKEANLVRMGSED----WWVWVPDSSGQ 292
                  R G W             ++ +   +     +++ +ED    W V   ++S  
Sbjct: 68  ASVADALRDGVWWINGSRSRNPIIQLLKNCLPLSSVVNLQVDAEDDLFMWKVGGSEASVG 127

The following BLAST results are available for this feature:

BLAST of ClCG03G009960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059752.1	9.7e-28	37.74	F17F8.5 [Cucumis melo var. makuwa] >TYJ99767.1 F17F8.5 [Cucumis melo var. makuwa...	[more]
KAA0062318.1	5.3e-26	33.22	uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]	[more]
XP_008452126.1	5.3e-26	38.94	PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]	[more]
TYK19523.1	5.3e-26	38.94	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0057642.1	1.6e-25	38.46	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of ClCG03G009960 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG03G009960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UV01	4.7e-28	37.74	F17F8.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00020 PE=4 S...	[more]
A0A5A7V3Z0	2.6e-26	33.22	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3D7P6	2.6e-26	38.94	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold41...	[more]
A0A1S3BSI8	2.6e-26	38.94	uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=...	[more]
A0A5A7UP65	7.5e-26	38.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]

BLAST of ClCG03G009960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16486.1	1.5e-05	24.12	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 45..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G009960.1	ClCG03G009960.1	mRNA