Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTGCTTTCCATCGCCCGAGCTGAAGGCAGAGCCCCTCATGGCTTGGTATATGAGAGTCCGGTGGCATTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGAATCCCAATGGCAAGGACCCATGTGGTGAATCCAAATGCTCCCCCCTTCCCCTTGCAGCACAAGTACAATCTACTCCTGCACAAGAAAGCAAATACTCCACAACGATCCAGAAAGGTAACCACCATGTTGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTCGCTGTGTTTTTGGCAATGGGAGTGTACTATGTACTACGTACACGTCAAGCCAATGCAAACCGAGCTATGTCTGCACAACCTAGCGCTTGA
mRNA sequence
ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTGCTTTCCATCGCCCGAGCTGAAGGCAGAGCCCCTCATGGCTTGGTATATGAGAGTCCGGTGGCATTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGAATCCCAATGGCAAGGACCCATGTGGTGAATCCAAATGCTCCCCCCTTCCCCTTGCAGCACAAGTACAATCTACTCCTGCACAAGAAAGCAAATACTCCACAACGATCCAGAAAGGTAACCACCATGTTGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTCGCTGTGTTTTTGGCAATGGGAGTGTACTATGTACTACGTACACGTCAAGCCAATGCAAACCGAGCTATGTCTGCACAACCTAGCGCTTGA
Coding sequence (CDS)
ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTGCTTTCCATCGCCCGAGCTGAAGGCAGAGCCCCTCATGGCTTGGTATATGAGAGTCCGGTGGCATTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGAATCCCAATGGCAAGGACCCATGTGGTGAATCCAAATGCTCCCCCCTTCCCCTTGCAGCACAAGTACAATCTACTCCTGCACAAGAAAGCAAATACTCCACAACGATCCAGAAAGGTAACCACCATGTTGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTCGCTGTGTTTTTGGCAATGGGAGTGTACTATGTACTACGTACACGTCAAGCCAATGCAAACCGAGCTATGTCTGCACAACCTAGCGCTTGA
Protein sequence
MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCGESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVLRTRQANANRAMSAQPSA
Homology
BLAST of ClCG03G001835 vs. NCBI nr
Match:
KAG7019217.1 (hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 255.0 bits (650), Expect = 3.7e-64
Identity = 128/136 (94.12%), Postives = 130/136 (95.59%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
MTQMLTFLFCLSSFT LSIA+AEGRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
Query: 61 ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
SKCSPLPLAAQVQSTPA+ESKYSTTIQKG H VGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAMSAQPS 137
RTRQANANRAMSAQPS
Sbjct: 121 RTRQANANRAMSAQPS 136
BLAST of ClCG03G001835 vs. NCBI nr
Match:
KAG6583459.1 (hypothetical protein SDJN03_19391, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 127/136 (93.38%), Postives = 129/136 (94.85%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
MTQMLTFLFCLSSFT LSIA+AEGRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1 MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
Query: 61 ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
SKCSPLPLAAQVQSTPA+ESKYSTTIQKG H VGAGGILGIVFGITFAV LAMGVYYVL
Sbjct: 61 ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120
Query: 121 RTRQANANRAMSAQPS 137
RTRQANANRAMSAQPS
Sbjct: 121 RTRQANANRAMSAQPS 136
BLAST of ClCG03G001835 vs. NCBI nr
Match:
XP_008457527.1 (PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo] >KAA0033889.1 uncharacterized protein E6C27_scaffold43059G00740 [Cucumis melo var. makuwa] >TYK01273.1 uncharacterized protein E5676_scaffold49G00600 [Cucumis melo var. makuwa])
HSP 1 Score: 251.5 bits (641), Expect = 4.1e-63
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
MT+MLTFLFCLSSFT LS+ARA+GRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG
Sbjct: 1 MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
Query: 61 ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
+SKCSPLPLAAQVQSTPA+ESKYSTTIQ H VGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61 DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAMS-AQPSA 138
RTRQANANRAMS AQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138
BLAST of ClCG03G001835 vs. NCBI nr
Match:
XP_011657962.2 (uncharacterized protein LOC105435923 [Cucumis sativus] >KGN66040.2 hypothetical protein Csa_020080 [Cucumis sativus])
HSP 1 Score: 248.1 bits (632), Expect = 4.5e-62
Identity = 125/138 (90.58%), Postives = 132/138 (95.65%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
MT+MLTFLFCL+SFT LSIA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQNP+GKDPCG
Sbjct: 1 MTRMLTFLFCLASFTFLSIAQADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
Query: 61 ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
+SKCSPLPLAAQVQSTPA+ESKYSTTIQ NH VGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61 DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
Query: 121 RTRQANANRAMS-AQPSA 138
RTRQANANRAMS AQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138
BLAST of ClCG03G001835 vs. NCBI nr
Match:
XP_038876402.1 (uncharacterized protein LOC120068840 [Benincasa hispida])
HSP 1 Score: 247.3 bits (630), Expect = 7.7e-62
Identity = 123/131 (93.89%), Postives = 127/131 (96.95%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
MT+MLTFLFCL+SFT LSIARA+GRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKD CG
Sbjct: 1 MTRMLTFLFCLTSFTFLSIARAQGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDLCG 60
Query: 61 ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNH VGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61 ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAM 132
TRQANANRA+
Sbjct: 121 HTRQANANRAV 131
BLAST of ClCG03G001835 vs. ExPASy TrEMBL
Match:
A0A5A7SXJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00600 PE=4 SV=1)
HSP 1 Score: 251.5 bits (641), Expect = 2.0e-63
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
MT+MLTFLFCLSSFT LS+ARA+GRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG
Sbjct: 1 MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
Query: 61 ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
+SKCSPLPLAAQVQSTPA+ESKYSTTIQ H VGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61 DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAMS-AQPSA 138
RTRQANANRAMS AQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138
BLAST of ClCG03G001835 vs. ExPASy TrEMBL
Match:
A0A1S3C6E2 (uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=4 SV=1)
HSP 1 Score: 251.5 bits (641), Expect = 2.0e-63
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
MT+MLTFLFCLSSFT LS+ARA+GRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG
Sbjct: 1 MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
Query: 61 ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
+SKCSPLPLAAQVQSTPA+ESKYSTTIQ H VGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61 DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAMS-AQPSA 138
RTRQANANRAMS AQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138
BLAST of ClCG03G001835 vs. ExPASy TrEMBL
Match:
A0A0A0LV85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495260 PE=4 SV=1)
HSP 1 Score: 249.6 bits (636), Expect = 7.5e-63
Identity = 126/138 (91.30%), Postives = 132/138 (95.65%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
MT+MLTFLFCL+SFT LSIARA+GRAPHGLVYESPVAFSPMAYDFFHPSTQNP+GKDPCG
Sbjct: 1 MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60
Query: 61 ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
+SKCSPLPLAAQVQSTPA+ESKYSTTIQ NH VGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61 DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120
Query: 121 RTRQANANRAMS-AQPSA 138
RTRQANANRAMS AQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138
BLAST of ClCG03G001835 vs. ExPASy TrEMBL
Match:
A0A6J1DWP3 (uncharacterized protein LOC111025099 OS=Momordica charantia OX=3673 GN=LOC111025099 PE=4 SV=1)
HSP 1 Score: 236.1 bits (601), Expect = 8.6e-59
Identity = 117/137 (85.40%), Postives = 123/137 (89.78%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
MTQMLTFLFCLSS T LS+ARAEGRAPHGLVYESP+AFSPMAYDFFHPS QN N KDPC
Sbjct: 1 MTQMLTFLFCLSSSTFLSVARAEGRAPHGLVYESPLAFSPMAYDFFHPSAQNSNAKDPCA 60
Query: 61 ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
SKCSPLPLAAQVQSTPAQ+SKYST +QKG H +GAGG+LGIV GI FAVFLAMGVYYVL
Sbjct: 61 ASKCSPLPLAAQVQSTPAQQSKYSTAVQKGEHGLGAGGVLGIVLGIMFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAMSAQPSA 138
RTRQANANRAMS QP A
Sbjct: 121 RTRQANANRAMSTQPGA 137
BLAST of ClCG03G001835 vs. ExPASy TrEMBL
Match:
A0A6J1GD80 (uncharacterized protein LOC111452884 OS=Cucurbita moschata OX=3662 GN=LOC111452884 PE=4 SV=1)
HSP 1 Score: 218.0 bits (554), Expect = 2.4e-53
Identity = 112/137 (81.75%), Postives = 119/137 (86.86%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
M Q LTFLF LSSF+ LSI RAEGRAPHGLVYE+PVAFSPMAYDFFHP T++PN +DPCG
Sbjct: 1 MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
Query: 61 ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
SKCSPLPLAAQ+QS PAQESKYSTT QKG G GGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61 ASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
Query: 121 RTRQANANRAMSAQPSA 138
RTR AN NRAMSA+P A
Sbjct: 121 RTRLANTNRAMSAKPGA 134
BLAST of ClCG03G001835 vs. TAIR 10
Match:
AT2G28410.1 (unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 99.8 bits (247), Expect = 1.9e-21
Identity = 55/115 (47.83%), Postives = 72/115 (62.61%), Query Frame = 0
Query: 1 MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGK-DPC 60
MT +F SS L + A A+ RAPHGL YE+PVAFSP A+DFFH +NP+ +PC
Sbjct: 1 MTSKTCLVFFFSSLILTNFALAQDRAPHGLAYETPVAFSPSAFDFFHTQPENPDPTFNPC 60
Query: 61 GESKCSPLPLAAQVQ--STPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFL 113
ES CSPLP+AA+VQ S AQES + + G++GI+FG+ FAV +
Sbjct: 61 SESGCSPLPVAAKVQGASAKAQESDIVSISTGTRSGIEEHGVVGIIFGLAFAVMM 115
BLAST of ClCG03G001835 vs. TAIR 10
Match:
AT5G60650.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 79.3 bits (194), Expect = 2.6e-15
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 0
Query: 1 MTQMLTFLF-CLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPC 60
+T L F F CLS LL ++ A R HG Y +P AFSP AYDFFHP + + +P
Sbjct: 4 LTHSLLFFFSCLS--MLLCVSIAGSRPVHGPAYTNPSAFSPQAYDFFHPKSSLSDHNNPP 63
Query: 61 GES----KCSPLPLAAQVQSTPAQESKYS----TTIQKGNHHVGAGGILGIVFGITFAVF 120
S SP P + +Q SK S TT + G G +G+V G++F F
Sbjct: 64 KSSPSPLSLSPSPSKTSIVEPDSQGSKVSSDEHTTSESRREEEGRGETIGVVLGLSFIAF 123
Query: 121 LAMGVYYVLRTRQANANRAMSAQPSA 138
L++G+Y+V++ ++AN R + A
Sbjct: 124 LSLGIYFVIKKQRANIIRTIVTHSDA 147
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7019217.1 | 3.7e-64 | 94.12 | hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6583459.1 | 1.8e-63 | 93.38 | hypothetical protein SDJN03_19391, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_008457527.1 | 4.1e-63 | 92.03 | PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo] >KAA0033889.1 unc... | [more] |
XP_011657962.2 | 4.5e-62 | 90.58 | uncharacterized protein LOC105435923 [Cucumis sativus] >KGN66040.2 hypothetical ... | [more] |
XP_038876402.1 | 7.7e-62 | 93.89 | uncharacterized protein LOC120068840 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SXJ1 | 2.0e-63 | 92.03 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3C6E2 | 2.0e-63 | 92.03 | uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=... | [more] |
A0A0A0LV85 | 7.5e-63 | 91.30 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495260 PE=4 SV=1 | [more] |
A0A6J1DWP3 | 8.6e-59 | 85.40 | uncharacterized protein LOC111025099 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A6J1GD80 | 2.4e-53 | 81.75 | uncharacterized protein LOC111452884 OS=Cucurbita moschata OX=3662 GN=LOC1114528... | [more] |
Match Name | E-value | Identity | Description | |
AT2G28410.1 | 1.9e-21 | 47.83 | unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bact... | [more] |
AT5G60650.1 | 2.6e-15 | 35.62 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |