ClCG03G001835 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG03G001835
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr03: 1948336 .. 1948749 (-)
RNA-Seq ExpressionClCG03G001835
SyntenyClCG03G001835
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTGCTTTCCATCGCCCGAGCTGAAGGCAGAGCCCCTCATGGCTTGGTATATGAGAGTCCGGTGGCATTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGAATCCCAATGGCAAGGACCCATGTGGTGAATCCAAATGCTCCCCCCTTCCCCTTGCAGCACAAGTACAATCTACTCCTGCACAAGAAAGCAAATACTCCACAACGATCCAGAAAGGTAACCACCATGTTGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTCGCTGTGTTTTTGGCAATGGGAGTGTACTATGTACTACGTACACGTCAAGCCAATGCAAACCGAGCTATGTCTGCACAACCTAGCGCTTGA

mRNA sequence

ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTGCTTTCCATCGCCCGAGCTGAAGGCAGAGCCCCTCATGGCTTGGTATATGAGAGTCCGGTGGCATTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGAATCCCAATGGCAAGGACCCATGTGGTGAATCCAAATGCTCCCCCCTTCCCCTTGCAGCACAAGTACAATCTACTCCTGCACAAGAAAGCAAATACTCCACAACGATCCAGAAAGGTAACCACCATGTTGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTCGCTGTGTTTTTGGCAATGGGAGTGTACTATGTACTACGTACACGTCAAGCCAATGCAAACCGAGCTATGTCTGCACAACCTAGCGCTTGA

Coding sequence (CDS)

ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTGCTTTCCATCGCCCGAGCTGAAGGCAGAGCCCCTCATGGCTTGGTATATGAGAGTCCGGTGGCATTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGAATCCCAATGGCAAGGACCCATGTGGTGAATCCAAATGCTCCCCCCTTCCCCTTGCAGCACAAGTACAATCTACTCCTGCACAAGAAAGCAAATACTCCACAACGATCCAGAAAGGTAACCACCATGTTGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTCGCTGTGTTTTTGGCAATGGGAGTGTACTATGTACTACGTACACGTCAAGCCAATGCAAACCGAGCTATGTCTGCACAACCTAGCGCTTGA

Protein sequence

MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCGESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVLRTRQANANRAMSAQPSA
Homology
BLAST of ClCG03G001835 vs. NCBI nr
Match: KAG7019217.1 (hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.0 bits (650), Expect = 3.7e-64
Identity = 128/136 (94.12%), Postives = 130/136 (95.59%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
           MTQMLTFLFCLSSFT LSIA+AEGRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60

Query: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQVQSTPA+ESKYSTTIQKG H VGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQPS 137
           RTRQANANRAMSAQPS
Sbjct: 121 RTRQANANRAMSAQPS 136

BLAST of ClCG03G001835 vs. NCBI nr
Match: KAG6583459.1 (hypothetical protein SDJN03_19391, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 127/136 (93.38%), Postives = 129/136 (94.85%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
           MTQMLTFLFCLSSFT LSIA+AEGRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60

Query: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQVQSTPA+ESKYSTTIQKG H VGAGGILGIVFGITFAV LAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVLLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQPS 137
           RTRQANANRAMSAQPS
Sbjct: 121 RTRQANANRAMSAQPS 136

BLAST of ClCG03G001835 vs. NCBI nr
Match: XP_008457527.1 (PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo] >KAA0033889.1 uncharacterized protein E6C27_scaffold43059G00740 [Cucumis melo var. makuwa] >TYK01273.1 uncharacterized protein E5676_scaffold49G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 251.5 bits (641), Expect = 4.1e-63
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
           MT+MLTFLFCLSSFT LS+ARA+GRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
           +SKCSPLPLAAQVQSTPA+ESKYSTTIQ   H VGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMS-AQPSA 138
           RTRQANANRAMS AQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

BLAST of ClCG03G001835 vs. NCBI nr
Match: XP_011657962.2 (uncharacterized protein LOC105435923 [Cucumis sativus] >KGN66040.2 hypothetical protein Csa_020080 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 4.5e-62
Identity = 125/138 (90.58%), Postives = 132/138 (95.65%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
           MT+MLTFLFCL+SFT LSIA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQNP+GKDPCG
Sbjct: 1   MTRMLTFLFCLASFTFLSIAQADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60

Query: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
           +SKCSPLPLAAQVQSTPA+ESKYSTTIQ  NH VGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQNSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRQANANRAMS-AQPSA 138
           RTRQANANRAMS AQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

BLAST of ClCG03G001835 vs. NCBI nr
Match: XP_038876402.1 (uncharacterized protein LOC120068840 [Benincasa hispida])

HSP 1 Score: 247.3 bits (630), Expect = 7.7e-62
Identity = 123/131 (93.89%), Postives = 127/131 (96.95%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
           MT+MLTFLFCL+SFT LSIARA+GRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKD CG
Sbjct: 1   MTRMLTFLFCLTSFTFLSIARAQGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDLCG 60

Query: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
           ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNH VGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAM 132
            TRQANANRA+
Sbjct: 121 HTRQANANRAV 131

BLAST of ClCG03G001835 vs. ExPASy TrEMBL
Match: A0A5A7SXJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00600 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.0e-63
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
           MT+MLTFLFCLSSFT LS+ARA+GRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
           +SKCSPLPLAAQVQSTPA+ESKYSTTIQ   H VGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMS-AQPSA 138
           RTRQANANRAMS AQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

BLAST of ClCG03G001835 vs. ExPASy TrEMBL
Match: A0A1S3C6E2 (uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.0e-63
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
           MT+MLTFLFCLSSFT LS+ARA+GRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
           +SKCSPLPLAAQVQSTPA+ESKYSTTIQ   H VGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMS-AQPSA 138
           RTRQANANRAMS AQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

BLAST of ClCG03G001835 vs. ExPASy TrEMBL
Match: A0A0A0LV85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495260 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.5e-63
Identity = 126/138 (91.30%), Postives = 132/138 (95.65%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
           MT+MLTFLFCL+SFT LSIARA+GRAPHGLVYESPVAFSPMAYDFFHPSTQNP+GKDPCG
Sbjct: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60

Query: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
           +SKCSPLPLAAQVQSTPA+ESKYSTTIQ  NH VGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRQANANRAMS-AQPSA 138
           RTRQANANRAMS AQPSA
Sbjct: 121 RTRQANANRAMSAAQPSA 138

BLAST of ClCG03G001835 vs. ExPASy TrEMBL
Match: A0A6J1DWP3 (uncharacterized protein LOC111025099 OS=Momordica charantia OX=3673 GN=LOC111025099 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.6e-59
Identity = 117/137 (85.40%), Postives = 123/137 (89.78%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
           MTQMLTFLFCLSS T LS+ARAEGRAPHGLVYESP+AFSPMAYDFFHPS QN N KDPC 
Sbjct: 1   MTQMLTFLFCLSSSTFLSVARAEGRAPHGLVYESPLAFSPMAYDFFHPSAQNSNAKDPCA 60

Query: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQVQSTPAQ+SKYST +QKG H +GAGG+LGIV GI FAVFLAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAQQSKYSTAVQKGEHGLGAGGVLGIVLGIMFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQPSA 138
           RTRQANANRAMS QP A
Sbjct: 121 RTRQANANRAMSTQPGA 137

BLAST of ClCG03G001835 vs. ExPASy TrEMBL
Match: A0A6J1GD80 (uncharacterized protein LOC111452884 OS=Cucurbita moschata OX=3662 GN=LOC111452884 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.4e-53
Identity = 112/137 (81.75%), Postives = 119/137 (86.86%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60
           M Q LTFLF LSSF+ LSI RAEGRAPHGLVYE+PVAFSPMAYDFFHP T++PN +DPCG
Sbjct: 1   MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ESKCSPLPLAAQVQSTPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQ+QS PAQESKYSTT QKG    G GGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQLQSNPAQESKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMSAQPSA 138
           RTR AN NRAMSA+P A
Sbjct: 121 RTRLANTNRAMSAKPGA 134

BLAST of ClCG03G001835 vs. TAIR 10
Match: AT2G28410.1 (unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-21
Identity = 55/115 (47.83%), Postives = 72/115 (62.61%), Query Frame = 0

Query: 1   MTQMLTFLFCLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGK-DPC 60
           MT     +F  SS  L + A A+ RAPHGL YE+PVAFSP A+DFFH   +NP+   +PC
Sbjct: 1   MTSKTCLVFFFSSLILTNFALAQDRAPHGLAYETPVAFSPSAFDFFHTQPENPDPTFNPC 60

Query: 61  GESKCSPLPLAAQVQ--STPAQESKYSTTIQKGNHHVGAGGILGIVFGITFAVFL 113
            ES CSPLP+AA+VQ  S  AQES   +        +   G++GI+FG+ FAV +
Sbjct: 61  SESGCSPLPVAAKVQGASAKAQESDIVSISTGTRSGIEEHGVVGIIFGLAFAVMM 115

BLAST of ClCG03G001835 vs. TAIR 10
Match: AT5G60650.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 2.6e-15
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 0

Query: 1   MTQMLTFLF-CLSSFTLLSIARAEGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPC 60
           +T  L F F CLS   LL ++ A  R  HG  Y +P AFSP AYDFFHP +   +  +P 
Sbjct: 4   LTHSLLFFFSCLS--MLLCVSIAGSRPVHGPAYTNPSAFSPQAYDFFHPKSSLSDHNNPP 63

Query: 61  GES----KCSPLPLAAQVQSTPAQESKYS----TTIQKGNHHVGAGGILGIVFGITFAVF 120
             S      SP P    +    +Q SK S    TT +      G G  +G+V G++F  F
Sbjct: 64  KSSPSPLSLSPSPSKTSIVEPDSQGSKVSSDEHTTSESRREEEGRGETIGVVLGLSFIAF 123

Query: 121 LAMGVYYVLRTRQANANRAMSAQPSA 138
           L++G+Y+V++ ++AN  R +     A
Sbjct: 124 LSLGIYFVIKKQRANIIRTIVTHSDA 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7019217.13.7e-6494.12hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6583459.11.8e-6393.38hypothetical protein SDJN03_19391, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008457527.14.1e-6392.03PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo] >KAA0033889.1 unc... [more]
XP_011657962.24.5e-6290.58uncharacterized protein LOC105435923 [Cucumis sativus] >KGN66040.2 hypothetical ... [more]
XP_038876402.17.7e-6293.89uncharacterized protein LOC120068840 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SXJ12.0e-6392.03Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C6E22.0e-6392.03uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=... [more]
A0A0A0LV857.5e-6391.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G495260 PE=4 SV=1[more]
A0A6J1DWP38.6e-5985.40uncharacterized protein LOC111025099 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1GD802.4e-5381.75uncharacterized protein LOC111452884 OS=Cucurbita moschata OX=3662 GN=LOC1114528... [more]
Match NameE-valueIdentityDescription
AT2G28410.11.9e-2147.83unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bact... [more]
AT5G60650.12.6e-1535.62unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35718EXPRESSED PROTEINcoord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G001835.1ClCG03G001835.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane