ClCG02G012110 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G012110
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionzinc-regulated protein 8-like
LocationCG_Chr02: 25416713 .. 25417072 (+)
RNA-Seq ExpressionClCG02G012110
SyntenyClCG02G012110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCCTCTTCTTCTCCCACTTTCCTCTCTAATTCCAACCCTCCTCTTAGCTCCTCCGAATCAGAATTCTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAAGACCTCCTCCCGGACTCCCCCTCGCCGCCCCCCTCCACCGTCGCCGCCCCCCTCCACTGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTTGTCAAACACGCCGCCTTGGCCTACCTTCAGCCCATGCTCACGCCGCCCGTCGCCGGCGATCGTACCTTCATGCGCAGGCTCAAGAAGCACGGTTTCGGATGCATCGAGTGGCTCGCTGCTGTCGTCGCTGGAGTCCGCCGGTGGTAG

mRNA sequence

ATGGAACCCTCTTCTTCTCCCACTTTCCTCTCTAATTCCAACCCTCCTCTTAGCTCCTCCGAATCAGAATTCTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAAGACCTCCTCCCGGACTCCCCCTCGCCGCCCCCCTCCACCGTCGCCGCCCCCCTCCACTGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTTGTCAAACACGCCGCCTTGGCCTACCTTCAGCCCATGCTCACGCCGCCCGTCGCCGGCGATCGTACCTTCATGCGCAGGCTCAAGAAGCACGGTTTCGGATGCATCGAGTGGCTCGCTGCTGTCGTCGCTGGAGTCCGCCGGTGGTAG

Coding sequence (CDS)

ATGGAACCCTCTTCTTCTCCCACTTTCCTCTCTAATTCCAACCCTCCTCTTAGCTCCTCCGAATCAGAATTCTCCGACATCGAAATGACCCCTCTTCAATCCTACACCAGCCTCAAAGACCTCCTCCCGGACTCCCCCTCGCCGCCCCCCTCCACCGTCGCCGCCCCCCTCCACTGCCCCGCCTGGGACGAACTCCCCATCAAAAACCCACTTGTCAAACACGCCGCCTTGGCCTACCTTCAGCCCATGCTCACGCCGCCCGTCGCCGGCGATCGTACCTTCATGCGCAGGCTCAAGAAGCACGGTTTCGGATGCATCGAGTGGCTCGCTGCTGTCGTCGCTGGAGTCCGCCGGTGGTAG

Protein sequence

MEPSSSPTFLSNSNPPLSSSESEFSDIEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPAWDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRRW
Homology
BLAST of ClCG02G012110 vs. NCBI nr
Match: KAG6571006.1 (hypothetical protein SDJN03_29921, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010836.1 hypothetical protein SDJN02_27632, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.3 bits (482), Expect = 9.7e-45
Identity = 100/119 (84.03%), Postives = 104/119 (87.39%), Query Frame = 0

Query: 5   SSPTFLSNSNPPLSSSESEFSDIEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPAWDE 64
           SSPTFLS S+  LSSSE EFSDIEMTPLQSYTSLKDLLPD+PSPPPS  A PL CPAWDE
Sbjct: 4   SSPTFLS-SDRLLSSSELEFSDIEMTPLQSYTSLKDLLPDTPSPPPS-AAYPLQCPAWDE 63

Query: 65  LPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVV----AGVRRW 120
           LPIKNPLVKHAALAYLQPMLTPP AGDR+FMRRLKKHGFGCIEWL AV+     GVRRW
Sbjct: 64  LPIKNPLVKHAALAYLQPMLTPPAAGDRSFMRRLKKHGFGCIEWLVAVIGELSGGVRRW 120

BLAST of ClCG02G012110 vs. NCBI nr
Match: XP_021810412.1 (uncharacterized protein LOC110753763 [Prunus avium])

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-19
Identity = 65/124 (52.42%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQ--SYTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q  +YTSLKDLLP S    P T+ +P H  +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPAS----PPTIMSPTHNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCVCGGANGLGCFAWLGDVVL 134

BLAST of ClCG02G012110 vs. NCBI nr
Match: PQQ14465.1 (uncharacterized protein Pyn_20094 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-19
Identity = 65/124 (52.42%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQ--SYTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q  +YTSLKDLLP S    P T+ +P H  +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPAS----PPTIMSPTHNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCVCGGANGLGCFAWLGDVVL 134

BLAST of ClCG02G012110 vs. NCBI nr
Match: PQQ02572.1 (uncharacterized protein Pyn_10650 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-19
Identity = 65/124 (52.42%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQ--SYTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q  +YTSLKDLLP S    P T+ +P H  +
Sbjct: 17  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPVS----PPTIMSPTHNSS 76

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 77  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCVCGGANGLGCFAWLGDVVL 132

BLAST of ClCG02G012110 vs. NCBI nr
Match: XP_007199228.2 (uncharacterized protein LOC18768692 [Prunus persica] >ONH92342.1 hypothetical protein PRUPE_8G169400 [Prunus persica])

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-18
Identity = 64/124 (51.61%), Postives = 77/124 (62.10%), Query Frame = 0

Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQ--SYTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q  +YTSLKDLLP S    P T+ +P    +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPAS----PPTIMSPTQNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVL 134

BLAST of ClCG02G012110 vs. ExPASy TrEMBL
Match: A0A0A0LPR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G271440 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-36
Identity = 88/117 (75.21%), Postives = 93/117 (79.49%), Query Frame = 0

Query: 3   PSSSPTFLSNSNPPLSSSESEFS-DIEMTPLQSYTSLKDLLPDSPSPPPSTVAAPLHCPA 62
           PS SPT   + N PLSS E EFS DIEMTPLQSYTSLKDLLPDSPSPPPS  +     PA
Sbjct: 9   PSPSPTSFLSPNHPLSSPELEFSDDIEMTPLQSYTSLKDLLPDSPSPPPSATS-----PA 68

Query: 63  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKKHGFGCIEWLAAVVAGVRR 119
           +D+LPIKNPLVKHAALAYLQPMLTPP     TF+R LKKHGFGCIEWLAAVV  VRR
Sbjct: 69  FDQLPIKNPLVKHAALAYLQPMLTPPTTSHPTFLRILKKHGFGCIEWLAAVVHEVRR 120

BLAST of ClCG02G012110 vs. ExPASy TrEMBL
Match: A0A314Z2H1 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_20094 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 65/124 (52.42%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQ--SYTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q  +YTSLKDLLP S    P T+ +P H  +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPAS----PPTIMSPTHNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCVCGGANGLGCFAWLGDVVL 134

BLAST of ClCG02G012110 vs. ExPASy TrEMBL
Match: A0A6P5S7A4 (uncharacterized protein LOC110753763 OS=Prunus avium OX=42229 GN=LOC110753763 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 65/124 (52.42%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQ--SYTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q  +YTSLKDLLP S    P T+ +P H  +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPAS----PPTIMSPTHNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCVCGGANGLGCFAWLGDVVL 134

BLAST of ClCG02G012110 vs. ExPASy TrEMBL
Match: A0A314Y647 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10650 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19
Identity = 65/124 (52.42%), Postives = 78/124 (62.90%), Query Frame = 0

Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQ--SYTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q  +YTSLKDLLP S    P T+ +P H  +
Sbjct: 17  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPVS----PPTIMSPTHNSS 76

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 77  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCVCGGANGLGCFAWLGDVVL 132

BLAST of ClCG02G012110 vs. ExPASy TrEMBL
Match: A0A251MZ17 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G169400 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 9.9e-19
Identity = 64/124 (51.61%), Postives = 77/124 (62.10%), Query Frame = 0

Query: 4   SSSPTFLSNSNPPLSSSESEFSDIEMTPLQ--SYTSLKDLLPDSPSPPPSTVAAPLHCPA 63
           S SP+FL     P    E E SDIEM  +Q  +YTSLKDLLP S    P T+ +P    +
Sbjct: 19  SHSPSFLL----PNGFGEIEISDIEMITIQTVTYTSLKDLLPAS----PPTIMSPTQNSS 78

Query: 64  WDELPIKNPLVKHAALAYLQPMLTPPVAGDRTFMRRLKK-------HGFGCIEWLAAVV- 118
           W E+PIKNPLVKHAALAYLQPM TPP  GD+  +R L++       +G GC  WL  VV 
Sbjct: 79  WHEIPIKNPLVKHAALAYLQPMSTPPEVGDKGLLRMLREKCLCEGTNGVGCFSWLGDVVL 134

BLAST of ClCG02G012110 vs. TAIR 10
Match: AT3G52520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06280.3); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.7e-05
Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 0

Query: 31  PLQSYTSLKDLLPDSPS--PPPSTVAAPLHCPAWDELPIKNPLVKHAALAYLQPMLTPPV 90
           PL  YTSLKD+LP S +    P+   A     +   + I+N LVK AA +YLQP  TP  
Sbjct: 37  PLPCYTSLKDILPSSSTTVDSPAISFAVASAVSGPTITIRNRLVKQAACSYLQPS-TPTP 96

Query: 91  AGDRTFMRRL 99
           + + +F+RR+
Sbjct: 97  SSNPSFLRRV 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571006.19.7e-4584.03hypothetical protein SDJN03_29921, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021810412.12.4e-1952.42uncharacterized protein LOC110753763 [Prunus avium][more]
PQQ14465.12.4e-1952.42uncharacterized protein Pyn_20094 [Prunus yedoensis var. nudiflora][more]
PQQ02572.13.2e-1952.42uncharacterized protein Pyn_10650 [Prunus yedoensis var. nudiflora][more]
XP_007199228.22.0e-1851.61uncharacterized protein LOC18768692 [Prunus persica] >ONH92342.1 hypothetical pr... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LPR91.8e-3675.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G271440 PE=4 SV=1[more]
A0A314Z2H11.2e-1952.42Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_200... [more]
A0A6P5S7A41.2e-1952.42uncharacterized protein LOC110753763 OS=Prunus avium OX=42229 GN=LOC110753763 PE... [more]
A0A314Y6471.5e-1952.42Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_106... [more]
A0A251MZ179.9e-1951.61Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G169400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G52520.14.7e-0541.43unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR34569:SF12SUBFAMILY NOT NAMEDcoord: 19..115
NoneNo IPR availablePANTHERPTHR34569EXPRESSED PROTEINcoord: 19..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G012110.1ClCG02G012110.1mRNA