ClCG02G005480 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG02G005480
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr02: 5985649 .. 5985885 (-)
RNA-Seq ExpressionClCG02G005480
SyntenyClCG02G005480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTTCGCCCACTTTGGAGATGTGTATGAGCGAGCTCGCCAAATTCCGAGATCGATTCGGAGCCTCTTCAAGACGGTTCTTGCCGAAGATCAGAGACGAAGCAGCAACAGATCGCCGGCAGAAATCCATCCAGGAGGCTACCGAACAGAGCAGAGCAATCGAAGATCAAAAGGAGGTGATTCTTTCGGAGTCCACCATTTTCTTGCTAATTGATCGGTTTATTGTTTGGTGA

mRNA sequence

ATGAAGATTTCGCCCACTTTGGAGATGTGTATGAGCGAGCTCGCCAAATTCCGAGATCGATTCGGAGCCTCTTCAAGACGGTTCTTGCCGAAGATCAGAGACGAAGCAGCAACAGATCGCCGGCAGAAATCCATCCAGGAGGCTACCGAACAGAGCAGAGCAATCGAAGATCAAAAGGAGGTGATTCTTTCGGAGTCCACCATTTTCTTGCTAATTGATCGGTTTATTGTTTGGTGA

Coding sequence (CDS)

ATGAAGATTTCGCCCACTTTGGAGATGTGTATGAGCGAGCTCGCCAAATTCCGAGATCGATTCGGAGCCTCTTCAAGACGGTTCTTGCCGAAGATCAGAGACGAAGCAGCAACAGATCGCCGGCAGAAATCCATCCAGGAGGCTACCGAACAGAGCAGAGCAATCGAAGATCAAAAGGAGGTGATTCTTTCGGAGTCCACCATTTTCTTGCTAATTGATCGGTTTATTGTTTGGTGA

Protein sequence

MKISPTLEMCMSELAKFRDRFGASSRRFLPKIRDEAATDRRQKSIQEATEQSRAIEDQKEVILSESTIFLLIDRFIVW
Homology
BLAST of ClCG02G005480 vs. NCBI nr
Match: KAG6572007.1 (hypothetical protein SDJN03_28735, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.5 bits (293), Expect = 5.3e-23
Identity = 59/74 (79.73%), Postives = 69/74 (93.24%), Query Frame = 0

Query: 1  MKISPTLEMCMSELAKFRDRFGASSRRFLPKIRDEAATDRRQKSIQEATEQSRAIEDQKE 60
          MKISPT++MC+SELAKFRDRF  SSRRF PK+RDE+ TDRR+KSI+EAT+Q RAI+D+KE
Sbjct: 1  MKISPTIDMCISELAKFRDRFAGSSRRFFPKLRDESTTDRREKSIEEATKQIRAIDDRKE 60

Query: 61 VILSESTIFLLIDR 75
          VILSESTIFLLIDR
Sbjct: 61 VILSESTIFLLIDR 74

BLAST of ClCG02G005480 vs. NCBI nr
Match: KAA0031261.1 (hypothetical protein E6C27_scaffold139G00140 [Cucumis melo var. makuwa] >TYK06713.1 hypothetical protein E5676_scaffold13G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.5e-11
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 9  MCMSELAKFRDRFGA-SSRRFLPKIRDEAATDRRQKSIQEATEQSR--AIED--QKEVIL 68
          MCMS+LAKFRD F A SS RFLP +     TDRRQ SIQE T+Q++  AI+D   KEVIL
Sbjct: 1  MCMSQLAKFRDGFLANSSSRFLPTL---TTTDRRQISIQEPTKQNKPIAIDDPKPKEVIL 60

Query: 69 SESTIFLLIDRFIVW 79
          SESTIFLLIDRFIVW
Sbjct: 61 SESTIFLLIDRFIVW 72

BLAST of ClCG02G005480 vs. ExPASy TrEMBL
Match: A0A0A0K854 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075565 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = 0

Query: 1  MKISPTLEMCMSELAKFRDRF-GASSRRFLPKIRDEAATDRRQKSIQEATEQSRAI---- 60
          MKISPT+EMCM++LAKFRD F   SS RFLP I     TDRRQ SIQ+ T+Q++AI    
Sbjct: 1  MKISPTVEMCMNQLAKFRDVFLSNSSSRFLPTI---TTTDRRQISIQDPTKQNKAIAIDE 60

Query: 61 -EDQKEVILSESTIFLLIDRFIVW 79
              KEVILSESTIFLLIDRFIVW
Sbjct: 61 PSSPKEVILSESTIFLLIDRFIVW 81

BLAST of ClCG02G005480 vs. ExPASy TrEMBL
Match: A0A5A7SNR8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00140 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-11
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 9  MCMSELAKFRDRFGA-SSRRFLPKIRDEAATDRRQKSIQEATEQSR--AIED--QKEVIL 68
          MCMS+LAKFRD F A SS RFLP +     TDRRQ SIQE T+Q++  AI+D   KEVIL
Sbjct: 1  MCMSQLAKFRDGFLANSSSRFLPTL---TTTDRRQISIQEPTKQNKPIAIDDPKPKEVIL 60

Query: 69 SESTIFLLIDRFIVW 79
          SESTIFLLIDRFIVW
Sbjct: 61 SESTIFLLIDRFIVW 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6572007.15.3e-2379.73hypothetical protein SDJN03_28735, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0031261.13.5e-1169.33hypothetical protein E6C27_scaffold139G00140 [Cucumis melo var. makuwa] >TYK0671... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K8543.3e-1566.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075565 PE=4 SV=1[more]
A0A5A7SNR81.7e-1169.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 45..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G005480.1ClCG02G005480.1mRNA