ClCG01G024590 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G024590
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Transmembrane protein, putative
Location	CG_Chr01: 37618141 .. 37618587 (+)
RNA-Seq Expression	ClCG01G024590
Synteny	ClCG01G024590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCAAGATTCCTTCCTCAATCTCCCCATCATCACCAAATTACCTTTACTTCTTCCAAATCTCTCTCTCTCTCATTCTCTTCTTTCTCCTAATTTCCACCTCTTCCGCTAAAACCCTTCCCCACAAAACAAACGACGTATTACTCCGCCGTCACCGGACAACCCTCCACGGCGGCCCACCCACCACCCCACGCCGAGAAGTAGATCATCGACATCAGTATTACACAACCAACAAATTACAAATGGAGATCAAAATTAACAAGAGCAAGAAGAAAAAGAAGGTCCCGGTGGGATTTAAAAGCAATAATAATAATAATAAGGGAAGTGCTTTCTCTGTAATGCTCCCAAAGGGATTTGTTCCTCCTTCTGGTTCTTCGCCTTGCCATAACGAAAATCCTCAATCATCTTCTCTTACCTTTTACTGCCATCTTGATCGGCCTTGA

mRNA sequence

ATGGGTTTCAAGATTCCTTCCTCAATCTCCCCATCATCACCAAATTACCTTTACTTCTTCCAAATCTCTCTCTCTCTCATTCTCTTCTTTCTCCTAATTTCCACCTCTTCCGCTAAAACCCTTCCCCACAAAACAAACGACGTATTACTCCGCCGTCACCGGACAACCCTCCACGGCGGCCCACCCACCACCCCACGCCGAGAAGTAGATCATCGACATCAGTATTACACAACCAACAAATTACAAATGGAGATCAAAATTAACAAGAGCAAGAAGAAAAAGAAGGTCCCGGTGGGATTTAAAAGCAATAATAATAATAATAAGGGAAGTGCTTTCTCTGTAATGCTCCCAAAGGGATTTGTTCCTCCTTCTGGTTCTTCGCCTTGCCATAACGAAAATCCTCAATCATCTTCTCTTACCTTTTACTGCCATCTTGATCGGCCTTGA

Coding sequence (CDS)

ATGGGTTTCAAGATTCCTTCCTCAATCTCCCCATCATCACCAAATTACCTTTACTTCTTCCAAATCTCTCTCTCTCTCATTCTCTTCTTTCTCCTAATTTCCACCTCTTCCGCTAAAACCCTTCCCCACAAAACAAACGACGTATTACTCCGCCGTCACCGGACAACCCTCCACGGCGGCCCACCCACCACCCCACGCCGAGAAGTAGATCATCGACATCAGTATTACACAACCAACAAATTACAAATGGAGATCAAAATTAACAAGAGCAAGAAGAAAAAGAAGGTCCCGGTGGGATTTAAAAGCAATAATAATAATAATAAGGGAAGTGCTTTCTCTGTAATGCTCCCAAAGGGATTTGTTCCTCCTTCTGGTTCTTCGCCTTGCCATAACGAAAATCCTCAATCATCTTCTCTTACCTTTTACTGCCATCTTGATCGGCCTTGA

Protein sequence

MGFKIPSSISPSSPNYLYFFQISLSLILFFLLISTSSAKTLPHKTNDVLLRRHRTTLHGGPPTTPRREVDHRHQYYTTNKLQMEIKINKSKKKKKVPVGFKSNNNNNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP

Homology

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BLAST of ClCG01G024590 vs. NCBI nr
Match: KAA0052545.1 (hypothetical protein E6C27_scaffold120G001480 [Cucumis melo var. makuwa] >TYK13280.1 hypothetical protein E5676_scaffold255G008990 [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.8e-43
Identity = 116/161 (72.05%), Postives = 126/161 (78.26%), Query Frame = 0


Query: 1   MGFKIPSSISP-SSPNYLYFFQISLSLILFFLLIS-TSSAKTLPHKTNDVLLRRHRTT-- 60
           MGFKIPSS SP SSPNYL FFQISLSLILFFL+ S TSS K LPH++N+V    HR T  
Sbjct: 1   MGFKIPSSFSPYSSPNYLCFFQISLSLILFFLITSTTSSFKPLPHESNNV---HHRATAV 60

Query: 61  LHGGPP-TTPRREVD-HRHQYYTTNKLQMEIKINK-SKKKKK---VPVGFKSNNN---NN 120
           +HG    TT  REVD H H+ Y + KL+MEIKINK SKK KK   VP GFKS+NN   N+
Sbjct: 61  VHGSAMITTLGREVDHHHHREYRSKKLEMEIKINKISKKMKKKGVVPGGFKSSNNNKKND 120

Query: 121 KGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP 149
           KGSAFSVMLPKGFVPPSGSSPCHNENPQSSSL FYCHLDRP
Sbjct: 121 KGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLAFYCHLDRP 158

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BLAST of ClCG01G024590 vs. NCBI nr
Match: KGN49393.1 (hypothetical protein Csa_004373 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 8.1e-41
Identity = 114/163 (69.94%), Postives = 127/163 (77.91%), Query Frame = 0


Query: 1   MGFKIPSSISPSSPNYLYFFQISLSLILFFLLI-STSSAKTLP-HKTNDVLLRRHRTT-L 60
           MGFKIPSS   SSPNYL FFQISLSLILFFLL  +TSS K LP H+ ++V   RHRTT +
Sbjct: 1   MGFKIPSSF--SSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNV---RHRTTVV 60

Query: 61  HGGPPTTPRREVDHRHQY---YTTNKLQMEIKINK-SKK--KKKV---PVGFKSNNN--- 120
           HG   TT RREVDH H +   Y +NKL+MEIKINK SKK  K+KV   P GFKS+N+   
Sbjct: 61  HGSAITTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNK 120

Query: 121 NNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP 149
           N+KGSAFS MLPKGFVPPSGSSPCHNE+PQSSSL FYCHLDRP
Sbjct: 121 NDKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHLDRP 158

[Close]

BLAST of ClCG01G024590 vs. NCBI nr
Match: KAG6581427.1 (hypothetical protein SDJN03_21429, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 4.6e-36
Identity = 96/151 (63.58%), Postives = 105/151 (69.54%), Query Frame = 0


Query: 1   MGFKIPSSISPSSPNYLYFFQISLSLILFFLLISTSSAKTLPHKTNDVLLRRHRTTLHGG 60
           MGFKI S           FFQIS+SLILFFLLIS+SS+  L    +DV L RHRTTLHGG
Sbjct: 1   MGFKIQSP----------FFQISISLILFFLLISSSSSAKLLPSRSDVQLHRHRTTLHGG 60

Query: 61  PPTT-----PRREVDHRHQYYTTNKLQMEIKINKSKKKKKVPVGFKSN-NNNNKGSAFSV 120
            PTT     P+REVD     Y  NKLQM IK    K KKK    F+SN NNNNKG+AFSV
Sbjct: 61  APTTPFLLNPQREVDQ----YKANKLQMAIKNKSKKNKKKTTARFESNGNNNNKGTAFSV 120

Query: 121 MLPKGFVPPSGSSPCHNENPQSSSLTFYCHL 146
           MLPKGFVPPSGSSPCHN++PQSSS  FYCHL
Sbjct: 121 MLPKGFVPPSGSSPCHNQSPQSSSPAFYCHL 137

[Close]

BLAST of ClCG01G024590 vs. NCBI nr
Match: KAG7026467.1 (hypothetical protein SDJN02_10467, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.6 bits (322), Expect = 4.3e-26
Identity = 83/146 (56.85%), Postives = 92/146 (63.01%), Query Frame = 0


Query: 1   MGFKIPSSISPSSPNYLYFFQISLSLILFFLLISTSSAKTLP-HKTNDVLLRRHRTTLHG 60
           MGFKI  S    SPNYLY+  ISLSLILFFLLIS+SSA+ LP  + N     RHRTTLH 
Sbjct: 1   MGFKIQPS---PSPNYLYYLSISLSLILFFLLISSSSAQPLPLRRPNLAAHHRHRTTLHV 60

Query: 61  GPPTTPRREVDHRHQYYTTNKLQMEIKINKSKKKKKVPVGFKSNNNNNKGSAFSVMLPKG 120
           G PTT           +T  KLQME     +KKKKK           NK +AFS MLPKG
Sbjct: 61  GAPTTT----------FTAKKLQME----TNKKKKK-----------NKATAFSAMLPKG 116

Query: 121 FVPPSGSSPCHNENPQSSSLTFYCHL 146
           FVPPSGSSPCHNENP+   + FYCHL
Sbjct: 121 FVPPSGSSPCHNENPE--FVAFYCHL 116

[Close]

BLAST of ClCG01G024590 vs. NCBI nr
Match: KAG6594469.1 (hypothetical protein SDJN03_11022, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-25
Identity = 83/146 (56.85%), Postives = 91/146 (62.33%), Query Frame = 0


Query: 1   MGFKIPSSISPSSPNYLYFFQISLSLILFFLLISTSSAKTLP-HKTNDVLLRRHRTTLHG 60
           MGFKI  S    SPNYLY+  ISLSLILFFLLIS SSA+ LP  + N     RHRTTLH 
Sbjct: 1   MGFKIQPS---PSPNYLYYLSISLSLILFFLLISFSSAQPLPLRRLNLAAHHRHRTTLHV 60

Query: 61  GPPTTPRREVDHRHQYYTTNKLQMEIKINKSKKKKKVPVGFKSNNNNNKGSAFSVMLPKG 120
           G PTT           +T  KLQME     +KKKKK           NK +AFS MLPKG
Sbjct: 61  GAPTTT----------FTAKKLQME----TNKKKKK-----------NKTTAFSAMLPKG 116

Query: 121 FVPPSGSSPCHNENPQSSSLTFYCHL 146
           FVPPSGSSPCHNENP+   + FYCHL
Sbjct: 121 FVPPSGSSPCHNENPE--FVAFYCHL 116

[Close]

BLAST of ClCG01G024590 vs. ExPASy TrEMBL
Match: A0A5A7UFQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008990 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.5e-44
Identity = 116/161 (72.05%), Postives = 126/161 (78.26%), Query Frame = 0


Query: 1   MGFKIPSSISP-SSPNYLYFFQISLSLILFFLLIS-TSSAKTLPHKTNDVLLRRHRTT-- 60
           MGFKIPSS SP SSPNYL FFQISLSLILFFL+ S TSS K LPH++N+V    HR T  
Sbjct: 1   MGFKIPSSFSPYSSPNYLCFFQISLSLILFFLITSTTSSFKPLPHESNNV---HHRATAV 60

Query: 61  LHGGPP-TTPRREVD-HRHQYYTTNKLQMEIKINK-SKKKKK---VPVGFKSNNN---NN 120
           +HG    TT  REVD H H+ Y + KL+MEIKINK SKK KK   VP GFKS+NN   N+
Sbjct: 61  VHGSAMITTLGREVDHHHHREYRSKKLEMEIKINKISKKMKKKGVVPGGFKSSNNNKKND 120

Query: 121 KGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP 149
           KGSAFSVMLPKGFVPPSGSSPCHNENPQSSSL FYCHLDRP
Sbjct: 121 KGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLAFYCHLDRP 158

[Close]

BLAST of ClCG01G024590 vs. ExPASy TrEMBL
Match: A0A0A0KIK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523350 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.9e-41
Identity = 114/163 (69.94%), Postives = 127/163 (77.91%), Query Frame = 0


Query: 1   MGFKIPSSISPSSPNYLYFFQISLSLILFFLLI-STSSAKTLP-HKTNDVLLRRHRTT-L 60
           MGFKIPSS   SSPNYL FFQISLSLILFFLL  +TSS K LP H+ ++V   RHRTT +
Sbjct: 1   MGFKIPSSF--SSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNV---RHRTTVV 60

Query: 61  HGGPPTTPRREVDHRHQY---YTTNKLQMEIKINK-SKK--KKKV---PVGFKSNNN--- 120
           HG   TT RREVDH H +   Y +NKL+MEIKINK SKK  K+KV   P GFKS+N+   
Sbjct: 61  HGSAITTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNK 120

Query: 121 NNKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHLDRP 149
           N+KGSAFS MLPKGFVPPSGSSPCHNE+PQSSSL FYCHLDRP
Sbjct: 121 NDKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHLDRP 158

[Close]

BLAST of ClCG01G024590 vs. ExPASy TrEMBL
Match: A0A7J6ER19 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_000048 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 60/158 (37.97%), Postives = 75/158 (47.47%), Query Frame = 0


Query: 26  LILFFLLISTSSAKTLPHKT-NDVLLRRHRTTLHGGPPTTPRREV--------------D 85
           LILFF+++S+SS  T P K      L    ++L   P TT   EV              +
Sbjct: 9   LILFFVVVSSSSTTTKPLKNITKNTLSSSSSSLSSSPSTTKHSEVVIKPRAPPTVAGDDN 68

Query: 86  HRHQYY-------TTNKLQMEI-----------KINKSKKKKKVPVGFKSNNNNNK---- 145
           +R  +Y         NK+ M             K  K K KKK  +  K    NNK    
Sbjct: 69  YRRVFYIKNTTPFNNNKMMMSSTPSTTTMINNRKTKKKKNKKKTTMMMKRKKKNNKDLET 128

[Close]

BLAST of ClCG01G024590 vs. ExPASy TrEMBL
Match: A0A067L1H6 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04607 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.8e-09
Identity = 49/98 (50.00%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 55  TTLHGGPPTTPRREVDHRHQYYTTNKLQM-----EIKINKSKKKKKVPVGFKSNN--NNN 114
           +T HG  P T  +E      +Y  N         E  INK KK KK  V  K      N 
Sbjct: 29  STSHGIQPKTSPKEPAQYQVFYIKNAQPFFLDDNEGLINKKKKNKKGKVVKKRRKQIKNF 88

Query: 115 KGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLTFYCHL 146
           K  AFSVMLPKGFVPPSGSSPCHNE P +S LTF+C L
Sbjct: 89  KTRAFSVMLPKGFVPPSGSSPCHNEKP-TSRLTFHCDL 125

[Close]

BLAST of ClCG01G024590 vs. ExPASy TrEMBL
Match: A0A444WWS8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g100459 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.6e-08
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 69  VDHRHQYYTTNKLQMEIKINKSKKKKKVPVGFKSNNNNNKGSAFSVMLPKGFVPPSGSSP 128
           +  R +    N   M+ K NK+  K K      S++++++  AFSVMLPKGFVPPSGSSP
Sbjct: 67  IKKRRRIVKRNYKMMKKKRNKNNNKNKNKNSLSSSSSSSR--AFSVMLPKGFVPPSGSSP 126

Query: 129 CHNENPQSSSLTFYCHL 146
           CHN+ P S+  +F+CHL
Sbjct: 127 CHNDQPNSAYSSFHCHL 141

[Close]

BLAST of ClCG01G024590 vs. TAIR 10
Match: AT4G18335.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 66  RREVDHRHQYYTTNKLQMEIKINKSKKKKKVPVGFKSNNNNN---KGSAFSVMLPKGFVP 125
           RR  +H++ YY  + L+    ++      K+    K NN  N   +   FSVMLPKGFVP
Sbjct: 81  RRRYNHQYYYYYRHTLRHRRGLHHRAGYFKMMA--KKNNGLNRPVRQDTFSVMLPKGFVP 140

Query: 126 PSGSSPCHNENPQSSSLTFYCHL 146
           PSGSSPCHN+NP S++ T +C L
Sbjct: 141 PSGSSPCHNQNPNSAT-TLFCDL 160

The following BLAST results are available for this feature:

BLAST of ClCG01G024590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052545.1	1.8e-43	72.05	hypothetical protein E6C27_scaffold120G001480 [Cucumis melo var. makuwa] >TYK132...	[more]
KGN49393.1	8.1e-41	69.94	hypothetical protein Csa_004373 [Cucumis sativus]	[more]
KAG6581427.1	4.6e-36	63.58	hypothetical protein SDJN03_21429, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7026467.1	4.3e-26	56.85	hypothetical protein SDJN02_10467, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6594469.1	1.6e-25	56.85	hypothetical protein SDJN03_11022, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of ClCG01G024590 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G024590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFQ9	8.5e-44	72.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KIK1	3.9e-41	69.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523350 PE=4 SV=1	[more]
A0A7J6ER19	1.2e-10	37.97	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_000048 PE=4 SV=1	[more]
A0A067L1H6	6.8e-09	50.00	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04607 PE=4 SV=1	[more]
A0A444WWS8	2.6e-08	46.75	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g100459 PE=4 SV=1	[more]

BLAST of ClCG01G024590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18335.1	1.8e-09	44.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G024590.1	ClCG01G024590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane