ClCG01G021540 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G021540
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Protein RALF-like 7
Location	CG_Chr01: 35311547 .. 35315653 (+)
RNA-Seq Expression	ClCG01G021540
Synteny	ClCG01G021540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCTCCACAAAAACATTGACCATTTTCATCACTATGATGATGGTTTGCTCGTTTATGGTAAACTCAACAAATGCAAACTCCATTAGTTATGGCGCCATCGGTGGGGATGGAAAGCCAATATGCAAAGATGGTAACTGCGAAGGAGATGCAGCCAATGGCTATAATAGAGGATGTGAGTCTGAAGATCGGTGTAGAACTGACAACATTGGTGGATGAGGACGCTATATAACTATTACATACAAATTTCAAACAACTTTTAGCATTATTTTGTCAACCATATAGTGTTGGTCTTTTCTAATGATTATATTTGTTGTATCATTATTTTGTCAACCATATCGTGTTGGGCATTTTCTAATGATTATATTCGTTGCACAAGCACGACCAAGGTTTTTTTTTATAATTTTTTATTTAGTTATATGTTGTCTTAATCAGTTGAACTATGCTAATAATTAGGATTTGCTAATGTTCAACCAAAATCAATTTATTTTATCATAATAATAGGTGTTTTGTTACGAAATAGTTTAACTTAACGGTAATTGGCGTGACCTTTCTCCTTGAAGTTGAAGGTTCGATCTCCATATTCTCACAATCGTTGTACTAAAAAAAATATATGAATAGAGATTCAAACTTTGTAATTTGGTTGAATATATATATCTTAACTAGTTGAACTATGGTTAAAAAATACAAAATTAATATAAATCAACCTTAATAAATTATGTAGGTAAGATTAGTGAGTTTTATTGTACTAATGATTTAAGTATCAAGTAATAAGTCATATTAGTCGAAAATGTCAGGAGGTTGTTGGCATTGTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAAATGAGAAAGAGAATCGCTTTTCAAAGGCAAAAGAAACAATGAAGGCTAAATATTACACCTCAACCATTTTATGTTAAGCACTTTTTAATTCACCAAATCAACACAAAATCATTATATATAAATTATATTCTCTTCAATTTCCCCCCGTCCCAACTGAGTAGATTTTGGTTTCCATTATACATTTAATATGTGAAAAAAAAAATAGGGACAACGAACCAAAATTCAACCAAAATGAAAATTCGTTATAAAGGATGAAAATATTTTTAATTGAAAAATAAAATATGACAAAATTACATTAATAATTTACCTTCAAATTCTATAAACTTAAGCAAAATCTGACCCAGCTATTAGTTTGGACCTTTTCTTAAAATAAAAAAAATATATATATATAATTTATTCATTTTCTTCTAGTAACAAATAAAGGAATTTGTTATGAATTTACATCTTTCAAATCGCGTGGTTTCGAACATAGCATATATTAACTTATATGATTAAAGTAAGTTTGAGATTACTTTTAGAAGAGTAAAAAGTAGAGGTGCAACATAAAATAAGAAAAATTGAATTATGGTAGTTTGATTTACCCAAATCTATAGAGGGTTGTTTTCAAATATAGCAAAGATGAGCTAATATATTAAATGCCTAACAAAACCTGAGAAACAAGCATGCCCTAAGTGGTGGATTGTTTCTGGTTTTGGGTGACTTTCAGTTTTCATATTTTATTACAAAAAAATTGAACTTTCATGATATATCACCATTTAAGTTTTGAACTTTTATATCTGTATCCAAACAAAACATAATAAAGAGATTTAAATTGATACAATTATGAAAATTCAAGGTTTAAATTAATATATTAAAAAAAGTTAGAGGCTAAATCGATAAAATTATTAGTTTGGAGTTTAATAATTGATAGAACCCAAAATTTAAGGTTTAAATTGATATTTATCTTAAAATTTATTAATTAAAACTACAAGATTTCACGTGATGAATCTTAGATAAAAATGGATCAGAAAAATAAATGTGTGTCCATTTTGAGAAAACAACGTGGCACATCCCCTCATTTCAGCAGCCGGTTTCATAGACTTTGCTCGAAATGTAATGGCAATCACAGAAAAACCCACTAAATTAAGCAAAACCCAACCGTTCTTAAAAATAGAAGTGGAAACAAATTGATGGATGGTTGCCTCAAAAGACAATATAAATTGAGATCCATTGGTTCATTTCTCTTCGCCTTCATTCAAATTAATAGAGTTGAAGCCAAGAAGATATTAGAAAAGTAAAAGGTCAATATACTCAATACAAAATGGCAGCCTCCATCAAGACATTGGCAATTTTCATAACTACAATGATGGTTTGCTCATTTCTAGTAAATCCTATCCATGCAACCCCTATTAGTTATGGTGCTATCGCTGAGAATGGAGGAGAAAAATGCCCTGATGGTAACTGCCAAACACTAGGAGATCCAGCCAACACTTATAACAGAGGA

mRNA sequence

ATGGCAGCCTCCACAAAAACATTGACCATTTTCATCACTATGATGATGGTTTGCTCGTTTATGGTAAACTCAACAAATGCAAACTCCATTAGTTATGGCGCCATCGGTGGGGATGGAAAGCCAATATGCAAAGATGGTAACTGCGAAGGAGATGCAGCCAATGGCTATAATAGAGGATGTGAGTCTGAAGATCGGTGTAGAACTGACAACATTGTAAATCCTATCCATGCAACCCCTATTAGTTATGGTGCTATCGCTGAGAATGGAGGAGAAAAATGCCCTGATGGTAACTGCCAAACACTAGGAGATCCAGCCAACACTTATAACAGAGGA

Coding sequence (CDS)

ATGGCAGCCTCCACAAAAACATTGACCATTTTCATCACTATGATGATGGTTTGCTCGTTTATGGTAAACTCAACAAATGCAAACTCCATTAGTTATGGCGCCATCGGTGGGGATGGAAAGCCAATATGCAAAGATGGTAACTGCGAAGGAGATGCAGCCAATGGCTATAATAGAGGATGTGAGTCTGAAGATCGGTGTAGAACTGACAACATTGTAAATCCTATCCATGCAACCCCTATTAGTTATGGTGCTATCGCTGAGAATGGAGGAGAAAAATGCCCTGATGGTAACTGCCAAACACTAGGAGATCCAGCCAACACTTATAACAGAGGA

Protein sequence

MAASTKTLTIFITMMMVCSFMVNSTNANSISYGAIGGDGKPICKDGNCEGDAANGYNRGCESEDRCRTDNIVNPIHATPISYGAIAENGGEKCPDGNCQTLGDPANTYNRG

Homology

[Close]

BLAST of ClCG01G021540 vs. NCBI nr
Match: KAA0058710.1 (protein RALF-like 7 [Cucumis melo var. makuwa] >TYK10516.1 protein RALF-like 7 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-09
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1  MAAST-KTLTIFITMMMVCSFMVNSTNAN-SISYGAIGGDGKPICKDGNCE--GDAANGY 60
          MA++T K L I I M+MVCS MV+ TNAN S+SYGAIG D    C DG+C+   D ANGY
Sbjct: 1  MASNTNKILAILIAMIMVCSLMVSPTNANPSLSYGAIGKDEDAKCSDGHCKTLEDPANGY 60

Query: 61 NRGCESEDRCRT 69
          NRGCE E+ CR+
Sbjct: 61 NRGCEPENDCRS 72

[Close]

BLAST of ClCG01G021540 vs. NCBI nr
Match: KAG6603811.1 (hypothetical protein SDJN03_04420, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 38/69 (55.07%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1   MAASTKTLTIFITMMMVCSFMVNSTNANSISYGAIGGDGKPICKDGNCE--GDAANGYNR 60
           MAASTK   I I MM+V SF+V    A S+ YGA+G D    C DG CE  GD AN YNR
Sbjct: 69  MAASTKMFAICIIMMLVSSFVVTPAGAESLGYGAVGADAGGKCTDGKCETLGDPANNYNR 128

Query: 61  GCESEDRCR 68
           GCE++  CR
Sbjct: 129 GCEADKMCR 137

[Close]

BLAST of ClCG01G021540 vs. NCBI nr
Match: KAE8648219.1 (hypothetical protein Csa_018424, partial [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-08
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1  MAAST-KTLTI-FITMMMVCSFMVNSTNANSISYGAIG-GDGKPICKDGNCE--GDAANG 60
          MA +T KTL I  + M+MVCS M N TNA S+ YGAIG GD +  CKDG CE  GD AN 
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDAR--CKDGKCEILGDPANN 60

Query: 61 YNRGCESEDRCRT 69
          Y RGCE E+ CR+
Sbjct: 61 YTRGCEPEEHCRS 71

[Close]

BLAST of ClCG01G021540 vs. NCBI nr
Match: KAE8648222.1 (hypothetical protein Csa_023891, partial [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-08
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 4  STKTLTI-FITMMMVCSFMVNSTNANSISYGAIG-GDGKPICKDGNCE--GDAANGYNRG 63
          + KTL I  + M+MVCS M N TNA S+ YGAIG GD +  CKDG CE  GD AN Y RG
Sbjct: 2  TNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDAR--CKDGKCEILGDPANNYTRG 61

Query: 64 CESEDRCRT 69
          CE E+ CR+
Sbjct: 62 CEPEEHCRS 68

[Close]

BLAST of ClCG01G021540 vs. NCBI nr
Match: KGN49664.1 (hypothetical protein Csa_018501 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-08
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1  MAAST-KTLTI-FITMMMVCSFMVNSTNANSISYGAIG-GDGKPICKDGNCE--GDAANG 60
          MA +T KTL I  + M+MVCS M N TNA S+ YGAIG GD +  CKDG CE  GD AN 
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDAR--CKDGKCEILGDPANN 60

Query: 61 YNRGCESEDRCRT 69
          Y RGCE E+ CR+
Sbjct: 61 YTRGCEPEEHCRS 71

[Close]

BLAST of ClCG01G021540 vs. ExPASy TrEMBL
Match: A0A5A7UUI8 (Protein RALF-like 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001660 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 1  MAAST-KTLTIFITMMMVCSFMVNSTNAN-SISYGAIGGDGKPICKDGNCE--GDAANGY 60
          MA++T K L I I M+MVCS MV+ TNAN S+SYGAIG D    C DG+C+   D ANGY
Sbjct: 1  MASNTNKILAILIAMIMVCSLMVSPTNANPSLSYGAIGKDEDAKCSDGHCKTLEDPANGY 60

Query: 61 NRGCESEDRCRT 69
          NRGCE E+ CR+
Sbjct: 61 NRGCEPENDCRS 72

[Close]

BLAST of ClCG01G021540 vs. ExPASy TrEMBL
Match: A0A0A0KLD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1  MAAST-KTLTI-FITMMMVCSFMVNSTNANSISYGAIG-GDGKPICKDGNCE--GDAANG 60
          MA +T KTL I  + M+MVCS M N TNA S+ YGAIG GD +  CKDG CE  GD AN 
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDAR--CKDGKCEILGDPANN 60

Query: 61 YNRGCESEDRCRT 69
          Y RGCE E+ CR+
Sbjct: 61 YTRGCEPEEHCRS 71

[Close]

BLAST of ClCG01G021540 vs. ExPASy TrEMBL
Match: A0A0A0KJT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1  MAAST-KTLTI-FITMMMVCSFMVNSTNANSISYGAIG-GDGKPICKDGNCE--GDAANG 60
          MA +T KTL I  I M+M CS + N TNA S+ YG IG GD +  CKDG CE  GD AN 
Sbjct: 1  MAGNTNKTLVILMIAMIMACSLIENPTNATSLGYGVIGKGDAR--CKDGKCEILGDPANN 60

Query: 61 YNRGCESEDRCRTDNIVNP 75
          Y RGCE E+ CR+ +  +P
Sbjct: 61 YTRGCEPEEHCRSGSSGSP 77

The following BLAST results are available for this feature:

BLAST of ClCG01G021540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058710.1	3.6e-09	59.72	protein RALF-like 7 [Cucumis melo var. makuwa] >TYK10516.1 protein RALF-like 7 [...	[more]
KAG6603811.1	1.4e-08	55.07	hypothetical protein SDJN03_04420, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8648219.1	5.2e-08	58.90	hypothetical protein Csa_018424, partial [Cucumis sativus]	[more]
KAE8648222.1	5.2e-08	57.97	hypothetical protein Csa_023891, partial [Cucumis sativus]	[more]
KGN49664.1	5.2e-08	58.90	hypothetical protein Csa_018501 [Cucumis sativus]	[more]

BLAST of ClCG01G021540 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G021540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UUI8	1.7e-09	59.72	Protein RALF-like 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G...	[more]
A0A0A0KLD0	2.5e-08	58.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=3 SV=1	[more]
A0A0A0KJT5	2.1e-07	53.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=3 SV=1	[more]

BLAST of ClCG01G021540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 27..67 e-value: 1.1E-4 score: 23.1
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 1..70
None	No IPR available	PANTHER	PTHR34270:SF3	PROTEIN RALF-LIKE 15-RELATED	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G021540.1	ClCG01G021540.1	mRNA