ClCG01G017380 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G017380
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRibonuclease III domain containing protein
LocationCG_Chr01: 31911364 .. 31915396 (-)
RNA-Seq ExpressionClCG01G017380
SyntenyClCG01G017380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCCCTCACAAGACTCTGTATTGCTCTTCCGCCACGCCTCCGCAGTCCGCACCTTATCCATTCCTCTTCAGTCTTCTACTCCCAAGTCCCAACCCCTCCCAAAACCCTGCATCAAAGGGCAAAATATTCAACTTTATAGCGAGGATTTCCCCATCCTCAAACCGGCAATGTCCAATTCGTCGTAACCGAAGTTCTTAATGCTCCCCCCACCTTCCGAATAAACCCACCACAACAATATTTTCAGTATTCACAACCAATGGAACTTTCTTCTTCTTTTGTTAAACTCTCATCCCCTTCTCCTAATTACTCTTTCTCGTCTTCTTTAACCCCATTTATTGTTAAAATTCACCCCAATCATCCCATTTTCCCGAACCCCTCGTCGGCGAATTTGCGTATTTTTGCAGTTGCAATTGACCCACAACAAGAACTGCCCAAAAACAATCCTCAGAGACTGCTCAAAGAGCTTGCAGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTACCCCCAAGAAGGTTTATTCTTAGACCGCCATTAGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTCAAATCATTCCCATTACTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCTGATAAAACTTGGATAGACGAGTACTTGCTGGAAGCCAAGCAAGCCCTTGGATACCCTCTTGAGCCCTCCGATAGTTATGGAGACGACAATCCTGCAAAACAATTTGACACTTTGTTGTACTTGGCCTTTCAGCATCCCTCATGCGAAAGAACAAAAGCCCGGCACATAAGATCGGGGCATTCGAGGCTATTGTTTTTGGGCCAATATGTAATCGAATTGGCGTTAGCGGAGTATTTTCTGCAGAGGTATCCTAGGGAATCGCCAGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCAAAGTGGATCAAAGCTGCCAGTTTGCAAAATTTGATATTCCCATATGATGATATGGACAAGATGATTAGGAAGGACCGCGAACCACCTGTGAAGTAAGTTTGGTATTGTCTTTTCATTGGTTCTAATTCTTCTTTTTTCACATTGTAAAATAATGCTGTGAATGAGATATTTGTAAGAAATATTTTTTGAGTTTAAGTGATTGAAAAGTTATGTCATTGATGTTTTAACCCCCATTTGAAGTTTTAGAAGAGTCCCAGAATGTGGTATCATCAGACTGAAAAGTACCAAAGTCTTTAGGGAAGTTGATTGTGCAATATGATGGTAATGCAATGTATGGTTGACTAGGAACTAGGATTGATAGGCCAGAAGAGACATTAAGAAGTTGGCATTTGATTAGGGTAAATGTTCAAGCCATAATTGCTGCTCCTGGTAATCTTAACTTGGTAGCTTAGTTGTGATGGTTGTGGACACTGAGCTTCATTATACAGCGGTCACCCATTTCGTGAAGATGACGCTACAAATGACCAGCTAAGAGACAATGTTACGGAAGTTCCACTGAAAATGTGGCATAAAGCCTTGATTTAAGTTACATGAGATTTTTATAGGTGGTTTGGTGCCATCGGGTCAATTCTTTGTGAACCTAAAACCACACATTCTTTCCTCAAATCTAGTACCTGCAGGCTATGGACGCCATTCCATGAATCTGGCTTCCTTGTAAATTCACTTTTTACCAATATGATAACTTTTTACCAACTTGGCTTTCTGTTTGTCCCTTTTTGGCAAATGTAGCTTTTATATCACTTGTCATTGGTCAAATATGCAATAAATAATTGGCCTGTGACTTGTTATATTATAGCGGGAGTTGGGAGATTGGATTTTCTGTGCCCACTGTACTTATGTACTTCATTTGCACCATGCATCTTAGTTTGCCTGATCAATCAAATTTACGTTTTGTGTGATGGAACATGTACTGTAGGTTATGTAGTGAAACATGTGTTGTTTCGAAATTCATTTTACTTCTGATTAGCTTCTGGGGTACCTGATATAACTTTGTTTTCCTTTTTCCTTTCATTTTTTGTTATGTGTTAATTCTTGTTACCAATACCGTGGTAGCAGCAAAGGTTGTGAAGAAAATTCTAGAGATAAATTGTAGATGTGCTTTCACATCAAATCATGGTATTACTTTCTGTTGCATTTTTTAGTGAATTATCTTGCACTTAATTGGTAAATTAGTAGCTTACACTTGGGAATAAAACTCCTGCCGGTTCTCTTTCTAAAATAGTTTGGCTCAATATATTATTTCAACAATTTGAGCCTAAAATTAATTTCCTTCGAGCAGATCTGTATTTTGGGCGTTATTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTACCGGGTTCTTTTTGAGGTGTTTGGAATGGATCCAGATGCAGAGGAATGCGAACCTAGGTTACGCAGGCAACTTGAAGATGTAGATTATGTCTCTGTTGAATTTGAGGACAAAAGGATCAGCTGGCAAGACATGGTTTCCTATAAGGCAAGTTTCATGCTTATTTTTAACAGCACAGTAAACTATGATGCTATCTTCTTTAACAATGAAATCTACTCTTATGATCGCGTTTTCCTTCTCTCATTTTTCAGCCACCAGAAGATGCTCTGTTTGCGCACCCTAGGCTCTTCAGAGCTTGTGTCCCACCTGGTATGCACCGATTCCGGGGTAATATATGGGATTACGATAGTCGACCTCAAGTCATGCAAGCACTAGGATACCCTGTACCTGTTGCTGACAAAATTCCTGACATCACGGAAGCGAGAAATATCGAACTTGGACTTGGACTGCAGGTAGCCCCCCTCCCAAACAACACAACAACACACACACGCGCATGACTTTTCTCTCATTCGTTGTCATAGTATTATTACATTCTCAATGTTGATTTTTATTGTCTTGTACTTGGGGCTATGTTTGTTGAGGTGATGGCTGATTATGACTTTTATTACGTCTAACGTGGGAAGGAGGATAAATAAAGAATGCATGTAGTCTAGAACTTTTACTTTATTTTTGATATAGATTAATAAGATGGTTTTAACTTTAAGTATCTTTTTAGGCTATATGTAAATTCTGTGGAACAGCATGATCACGTTAGTTAATCTCAGGCAATTTCTTAATCAAATGCAGCTTTGTTTTTTGCACCCATCAAAACACAAGTTTGAGCACCCTCGTTTCTGCTATGAACGATTAGAATACCTTGGCCAAAAGATCCAGGTAAGACCTTTCGTACATGTATTAGGGAGGGCATACTCCTTTCTCTCTATCAACATCCTGTCTACTTTTCAACCGTTATGTTTGGATCAAGTAACTTATGGTGGTTGGTCTGATTGTGTTCATTCAAGGATATCGTGATGGCTGAGAGACTGTTGATGAAGCATTTAGATGCTCCTGGAAAGTGGTTGCAGGAGAAGCACCGAAGATTGCTCATGAACAAGTTTTGCGGGCGATATTTGAGGGAGAAATATCTTCATAAACTTATCATCTATTCCGAAAAGGTTCAAGATGCATACGAGAACAACCGGAGGCTTCGAAACCCAGCCACCACAGCTGTTCAGCAAGCCCTTCATGGACTTTCTTATGTAGTTTATGGAAAGCCTGATGTGAGACGTCTTATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGCTGTCTGAGAATCTTGAAGGTAGATTATGCAAGCAAAGGCAAAGGAAGGGAAAAAGGGGGAACCATTTCTATCTTCATATGCCCTTCAGCCTTAATTCTCTCCTTTCTCTAGGATGAGGAGCTTCTTGTTACACATAATTGAAGTAGGTATGGTGCCAAATCTTGGCCAACAAAGAAGCTGATGTGAAATATATATGTATGGTAATTCTTTTTTAACTACTTCCTTGCAATATTCTATCAAATCCAGTTGACGTCTCTCCTGATAGTTTGTATTTTTTTTTAAGTCGTTTATTAATTATGATGCAAAAGAACATCATGAAGATGCTCATTATTGTCGGTGAGCAATTTAACTTTTAAACTACCAA

mRNA sequence

AAACCCCTCACAAGACTCTGTATTGCTCTTCCGCCACGCCTCCGCAGTCCGCACCTTATCCATTCCTCTTCAGTCTTCTACTCCCAAGTCCCAACCCCTCCCAAAACCCTGCATCAAAGGGCAAAATATTCAACTTTATAGCGAGGATTTCCCCATCCTCAAACCGGCAATGTCCAATTCGTCGTAACCGAAGTTCTTAATGCTCCCCCCACCTTCCGAATAAACCCACCACAACAATATTTTCAGTATTCACAACCAATGGAACTTTCTTCTTCTTTTGTTAAACTCTCATCCCCTTCTCCTAATTACTCTTTCTCGTCTTCTTTAACCCCATTTATTGTTAAAATTCACCCCAATCATCCCATTTTCCCGAACCCCTCGTCGGCGAATTTGCGTATTTTTGCAGTTGCAATTGACCCACAACAAGAACTGCCCAAAAACAATCCTCAGAGACTGCTCAAAGAGCTTGCAGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTACCCCCAAGAAGGTTTATTCTTAGACCGCCATTAGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTCAAATCATTCCCATTACTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCTGATAAAACTTGGATAGACGAGTACTTGCTGGAAGCCAAGCAAGCCCTTGGATACCCTCTTGAGCCCTCCGATAGTTATGGAGACGACAATCCTGCAAAACAATTTGACACTTTGTTGTACTTGGCCTTTCAGCATCCCTCATGCGAAAGAACAAAAGCCCGGCACATAAGATCGGGGCATTCGAGGCTATTGTTTTTGGGCCAATATGTAATCGAATTGGCGTTAGCGGAGTATTTTCTGCAGAGGTATCCTAGGGAATCGCCAGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCAAAGTGGATCAAAGCTGCCAGTTTGCAAAATTTGATATTCCCATATGATGATATGGACAAGATGATTAGGAAGGACCGCGAACCACCTGTGAAGATTGATAGGCCAGAAGAGACATTAAGAAGTTGGCATTTGATTAGGGTAAATGTTCAAGCCATAATTGCTGCTCCTGGTGGTTTGGTGCCATCGGGTCAATTCTTTGTGAACCTAAAACCACACATTCTTTCCTCAAATCTAGTACCTGCAGGCTATGGACGCCATTCCATGAATCTGGCTTCCTTATCTGTATTTTGGGCGTTATTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTACCGGGTTCTTTTTGAGGTGTTTGGAATGGATCCAGATGCAGAGGAATGCGAACCTAGGTTACGCAGGCAACTTGAAGATGTAGATTATGTCTCTGTTGAATTTGAGGACAAAAGGATCAGCTGGCAAGACATGCCACCAGAAGATGCTCTGTTTGCGCACCCTAGGCTCTTCAGAGCTTGTGTCCCACCTGGTATGCACCGATTCCGGGGTAATATATGGGATTACGATAGTCGACCTCAAGTCATGCAAGCACTAGGATACCCTGTACCTGTTGCTGACAAAATTCCTGACATCACGGAAGCGAGAAATATCGAACTTGGACTTGGACTGCAGCTTTGTTTTTTGCACCCATCAAAACACAAGTTTGAGCACCCTCGTTTCTGCTATGAACGATTAGAATACCTTGGCCAAAAGATCCAGGATATCGTGATGGCTGAGAGACTGTTGATGAAGCATTTAGATGCTCCTGGAAAGTGGTTGCAGGAGAAGCACCGAAGATTGCTCATGAACAAGTTTTGCGGGCGATATTTGAGGGAGAAATATCTTCATAAACTTATCATCTATTCCGAAAAGGTTCAAGATGCATACGAGAACAACCGGAGGCTTCGAAACCCAGCCACCACAGCTGTTCAGCAAGCCCTTCATGGACTTTCTTATGTAGTTTATGGAAAGCCTGATGTGAGACGTCTTATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGCTGTCTGAGAATCTTGAAGGTAGATTATGCAAGCAAAGGCAAAGGAAGGGAAAAAGGGGGAACCATTTCTATCTTCATATGCCCTTCAGCCTTAATTCTCTCCTTTCTCTAGGATGAGGAGCTTCTTGTTACACATAATTGAAGTAGGTATGGTGCCAAATCTTGGCCAACAAAGAAGCTGATGTGAAATATATATGTATGGTAATTCTTTTTTAACTACTTCCTTGCAATATTCTATCAAATCCAGTTGACGTCTCTCCTGATAGTTTGTATTTTTTTTTAAGTCGTTTATTAATTATGATGCAAAAGAACATCATGAAGATGCTCATTATTGTCGGTGAGCAATTTAACTTTTAAACTACCAA

Coding sequence (CDS)

ATGGAACTTTCTTCTTCTTTTGTTAAACTCTCATCCCCTTCTCCTAATTACTCTTTCTCGTCTTCTTTAACCCCATTTATTGTTAAAATTCACCCCAATCATCCCATTTTCCCGAACCCCTCGTCGGCGAATTTGCGTATTTTTGCAGTTGCAATTGACCCACAACAAGAACTGCCCAAAAACAATCCTCAGAGACTGCTCAAAGAGCTTGCAGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTACCCCCAAGAAGGTTTATTCTTAGACCGCCATTAGATGATAAGAAATTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTCAAATCATTCCCATTACTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCTGATAAAACTTGGATAGACGAGTACTTGCTGGAAGCCAAGCAAGCCCTTGGATACCCTCTTGAGCCCTCCGATAGTTATGGAGACGACAATCCTGCAAAACAATTTGACACTTTGTTGTACTTGGCCTTTCAGCATCCCTCATGCGAAAGAACAAAAGCCCGGCACATAAGATCGGGGCATTCGAGGCTATTGTTTTTGGGCCAATATGTAATCGAATTGGCGTTAGCGGAGTATTTTCTGCAGAGGTATCCTAGGGAATCGCCAGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCAAAGTGGATCAAAGCTGCCAGTTTGCAAAATTTGATATTCCCATATGATGATATGGACAAGATGATTAGGAAGGACCGCGAACCACCTGTGAAGATTGATAGGCCAGAAGAGACATTAAGAAGTTGGCATTTGATTAGGGTAAATGTTCAAGCCATAATTGCTGCTCCTGGTGGTTTGGTGCCATCGGGTCAATTCTTTGTGAACCTAAAACCACACATTCTTTCCTCAAATCTAGTACCTGCAGGCTATGGACGCCATTCCATGAATCTGGCTTCCTTATCTGTATTTTGGGCGTTATTTGGGGCAATATATTTATGTTTTGGAATGCCAGAAGTGTACCGGGTTCTTTTTGAGGTGTTTGGAATGGATCCAGATGCAGAGGAATGCGAACCTAGGTTACGCAGGCAACTTGAAGATGTAGATTATGTCTCTGTTGAATTTGAGGACAAAAGGATCAGCTGGCAAGACATGCCACCAGAAGATGCTCTGTTTGCGCACCCTAGGCTCTTCAGAGCTTGTGTCCCACCTGGTATGCACCGATTCCGGGGTAATATATGGGATTACGATAGTCGACCTCAAGTCATGCAAGCACTAGGATACCCTGTACCTGTTGCTGACAAAATTCCTGACATCACGGAAGCGAGAAATATCGAACTTGGACTTGGACTGCAGCTTTGTTTTTTGCACCCATCAAAACACAAGTTTGAGCACCCTCGTTTCTGCTATGAACGATTAGAATACCTTGGCCAAAAGATCCAGGATATCGTGATGGCTGAGAGACTGTTGATGAAGCATTTAGATGCTCCTGGAAAGTGGTTGCAGGAGAAGCACCGAAGATTGCTCATGAACAAGTTTTGCGGGCGATATTTGAGGGAGAAATATCTTCATAAACTTATCATCTATTCCGAAAAGGTTCAAGATGCATACGAGAACAACCGGAGGCTTCGAAACCCAGCCACCACAGCTGTTCAGCAAGCCCTTCATGGACTTTCTTATGTAGTTTATGGAAAGCCTGATGTGAGACGTCTTATGTTTGAGGTTTTTGATTTTGAGCAAATCCAACCTAAAGCTGTCTGA

Protein sequence

MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPKNNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAASLQNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFFVNLKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECEPRLRRQLEDVDYVSVEFEDKRISWQDMPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV
Homology
[Close]
BLAST of ClCG01G017380 vs. NCBI nr
Match: XP_038883471.1 (ribonuclease III domain-containing protein RNC1, chloroplastic [Benincasa hispida])

HSP 1 Score: 1047.3 bits (2707), Expect = 4.8e-302
Identity = 525/596 (88.09%), Postives = 529/596 (88.76%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPP+RFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPKRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTW+DEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFF 300
           SLQNLIFPYDDMDKMIRKDREPPVK                                   
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVK----------------------------------- 300

Query: 301 VNLKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360
                                      SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA
Sbjct: 301 ---------------------------SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360

Query: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFR 420
           EECEPRLRRQLEDVDYVSVEFEDKRISWQDM    PPEDALFAHPRLFRACVPPGMHRFR
Sbjct: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFR 420

Query: 421 GNIWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480
           GNIWDYDSRPQVMQALGYP+PV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY
Sbjct: 421 GNIWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480

Query: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 540
           ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS
Sbjct: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 534

Query: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of ClCG01G017380 vs. NCBI nr
Match: XP_008440359.1 (PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucumis melo])

HSP 1 Score: 1043.1 bits (2696), Expect = 9.1e-301
Identity = 523/596 (87.75%), Postives = 527/596 (88.42%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSS NLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTW+DEYLLEAKQALGYPL+PSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFL RYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFF 300
           SLQNLIFPYDDMDKMIRKDREPPVK                                   
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVK----------------------------------- 300

Query: 301 VNLKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360
                                      SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA
Sbjct: 301 ---------------------------SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360

Query: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFR 420
           EECEPRLRRQLEDVDYVSVEFEDKRISWQDM    PPEDALFAHPRLFRACVPPGMHRFR
Sbjct: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGMHRFR 420

Query: 421 GNIWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480
           GNIWDYDSRPQVMQALGYP+PV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY
Sbjct: 421 GNIWDYDSRPQVMQALGYPLPVVDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480

Query: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 540
           ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS
Sbjct: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 534

Query: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of ClCG01G017380 vs. NCBI nr
Match: XP_004141878.1 (ribonuclease III domain-containing protein RNC1, chloroplastic isoform X1 [Cucumis sativus] >KGN48593.1 hypothetical protein Csa_003755 [Cucumis sativus])

HSP 1 Score: 1026.9 bits (2654), Expect = 6.7e-296
Identity = 514/596 (86.24%), Postives = 525/596 (88.09%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSPS NYSFSSSLTPFIVKIHPNHPIFPNPSSANLR+FAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTW+DEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRL FLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFF 300
           SLQNLIFPYDDMDK+IRKDREPPVK                                   
Sbjct: 241 SLQNLIFPYDDMDKIIRKDREPPVK----------------------------------- 300

Query: 301 VNLKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360
                                      SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA
Sbjct: 301 ---------------------------SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360

Query: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFR 420
           +ECEPRLRRQLEDVDYVSVEFEDKRI WQDM    PPEDALFAHPRLFRACVPPGMHRFR
Sbjct: 361 KECEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFR 420

Query: 421 GNIWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480
           GNIWDYDSRPQVMQALGYP+PV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY
Sbjct: 421 GNIWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480

Query: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 540
           ERLEYLGQKIQDIVMAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYS
Sbjct: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYS 533

Query: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 533

[Close]
BLAST of ClCG01G017380 vs. NCBI nr
Match: XP_022133289.1 (ribonuclease III domain-containing protein RNC1, chloroplastic [Momordica charantia])

HSP 1 Score: 1023.8 bits (2646), Expect = 5.7e-295
Identity = 511/596 (85.74%), Postives = 525/596 (88.09%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPK 60
           MELSSSFV+L+SP+PNYSFSSSLTPF  KI+PN+P FPNP+S NLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKK+VPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTW+DEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDNYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRLLFLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKR+LPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFF 300
           SLQNLIFPYDDMDKMIRKDREPPVK                                   
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVK----------------------------------- 300

Query: 301 VNLKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360
                                      SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA
Sbjct: 301 ---------------------------SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360

Query: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFR 420
           EECEPRLRRQLEDVDYVSVEFEDK+ISWQDM    PPEDALFAHPRLFRACVPPGMHRFR
Sbjct: 361 EECEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFR 420

Query: 421 GNIWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480
           GNIWDYDSRPQVMQALGYPVPV+DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY
Sbjct: 421 GNIWDYDSRPQVMQALGYPVPVSDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480

Query: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 540
           ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS
Sbjct: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 534

Query: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           EKVQDAYENNRRLRNPATTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of ClCG01G017380 vs. NCBI nr
Match: XP_023543359.1 (ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1020.8 bits (2638), Expect = 4.8e-294
Identity = 509/596 (85.40%), Postives = 522/596 (87.58%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPK 60
           MELSS FVKLSSP+PN+SFSSSLTPF+VKIHPN+P   NPSS +LRIFAVA+DPQQELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTW+DEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFF 300
           SLQNLIFPYDDMDKM+RKDREPPVK                                   
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVK----------------------------------- 300

Query: 301 VNLKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360
                                      SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA
Sbjct: 301 ---------------------------SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360

Query: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFR 420
           EECEPRLRRQLEDVDYVSVEFEDK+ISWQDM    PPEDALFAHPRLFRACVPPGMHRFR
Sbjct: 361 EECEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFR 420

Query: 421 GNIWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480
           GNIWDYDSRPQVMQALGYPVPV DKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCY
Sbjct: 421 GNIWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480

Query: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 540
           ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLI+YS
Sbjct: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYS 534

Query: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           E+VQDAYENNRRLRNPATTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 541 EQVQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of ClCG01G017380 vs. ExPASy Swiss-Prot
Match: Q9SZV0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 861.7 bits (2225), Expect = 4.9e-249
Identity = 433/594 (72.90%), Postives = 475/594 (79.97%), Query Frame = 0 

Query: 4   SSSFVKL-SSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPKNN 63
           SSS +++ SS +P  SFSSS++ F  K      I       NLRI A      Q LP+++
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDS 68

Query: 64  PQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLP 123
           PQRLLKELA+RK AT PKKKVPP+RFILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 124 SSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKA 183
           SS+LNNADKTWIDEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHPSC+R +A
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 188

Query: 184 RHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAASL 243
           RH+++GHSRL FLGQYV+ELAL E+FLQRYPRESPGPMRERVFALIGKR LPKWIKAASL
Sbjct: 189 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 248

Query: 244 QNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFFVN 303
           QNLIFPYDDMDK+IRK+REPPVK                                     
Sbjct: 249 QNLIFPYDDMDKLIRKEREPPVK------------------------------------- 308

Query: 304 LKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 363
                                    SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 309 -------------------------SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADE 368

Query: 364 CEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFRGN 423
           C+PR RRQLEDVDYVSVEFE K++ WQD+    PPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 369 CQPRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGN 428

Query: 424 IWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 483
           IWD+DS+P+VMQ LGYP+ + D+I +ITEARNIELGLGLQLCFLHPSKHKFEHPRFC+ER
Sbjct: 429 IWDFDSKPKVMQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFER 488

Query: 484 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 543
           LEY+GQKIQDI MAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREK LH  IIYSE+
Sbjct: 489 LEYVGQKIQDIAMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEE 537

Query: 544 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           V D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 549 VHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 537

[Close]
BLAST of ClCG01G017380 vs. ExPASy Swiss-Prot
Match: Q8S1Z0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 785.0 bits (2026), Expect = 5.8e-226
Identity = 382/544 (70.22%), Postives = 435/544 (79.96%), Query Frame = 0 

Query: 59  PKNNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLS 118
           P N+P RLL+ELAERK+A SPKKK PPRRFIL+PPLDD++L +RFL+SPQL+LK+ PLLS
Sbjct: 52  PANSPSRLLRELAERKKAVSPKKKHPPRRFILKPPLDDERLTQRFLSSPQLSLKALPLLS 111

Query: 119 SCLPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDN----PAKQFDTLLYLAFQH 178
           SCLPS+ L+ AD+TW+DEYLLEAKQALGYPL PS++ GD +    PA+ FD LLYLAFQH
Sbjct: 112 SCLPSAPLSAADRTWMDEYLLEAKQALGYPLAPSETLGDGDDDGCPARHFDVLLYLAFQH 171

Query: 179 --PSCERTKARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRN 238
              SCERT+ RH+RSGHSRL FLGQYV+ELA  E+FLQRYPRESPGPMRERVFALIGKR 
Sbjct: 172 LDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKRA 231

Query: 239 LPKWIKAASLQNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGG 298
           +PKWIKAASL NL+FPYDD+DKMIRKDREPP K                           
Sbjct: 232 IPKWIKAASLHNLVFPYDDLDKMIRKDREPPAK--------------------------- 291

Query: 299 LVPSGQFFVNLKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFE 358
                                              +VFWALFGAIYLCFGMPEVYRVLFE
Sbjct: 292 -----------------------------------AVFWALFGAIYLCFGMPEVYRVLFE 351

Query: 359 VFGMDPDAEECEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACV 418
            FGMDP+ E C+P+LRRQLEDVDYVSVEFE ++++WQD+    PP DALFAHPRLFRACV
Sbjct: 352 AFGMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACV 411

Query: 419 PPGMHRFRGNIWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHK 478
           PPGMHRFRGNIWD+D+RP+VM  LGYP+P+ D+IP+ITEARNIELGLGLQLCFLHPSKHK
Sbjct: 412 PPGMHRFRGNIWDFDNRPKVMNTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHK 471

Query: 479 FEHPRFCYERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKY 538
           FEHPRFC ERLEY+GQKIQD+VMAERLLMKHLDAPG+WL EKHRRLLMNK+CGRYLR+K+
Sbjct: 472 FEHPRFCLERLEYVGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRLLMNKYCGRYLRDKH 531

Query: 539 LHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQ 593
           LH  IIY E VQD +E+NRRLRNP+TTAVQQA+HGL+Y VYGKPDVRRLMFEVFDFEQ+Q
Sbjct: 532 LHHYIIYGESVQDRFEHNRRLRNPSTTAVQQAIHGLAYCVYGKPDVRRLMFEVFDFEQVQ 533

[Close]
BLAST of ClCG01G017380 vs. ExPASy Swiss-Prot
Match: A6YSL1 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=4577 GN=RNC1 PE=1 SV=1)

HSP 1 Score: 784.3 bits (2024), Expect = 1.0e-225
Identity = 391/585 (66.84%), Postives = 449/585 (76.75%), Query Frame = 0 

Query: 22  SLTPFIVKIHPNHPIFPNPSSANLRIFAVAID------PQQELPKNNPQRLLKELAERKR 81
           +LTP    +H         SS  +R+ AVA D      P  E P N+P RLL+ELA+RK+
Sbjct: 12  TLTPLPFSLH--------SSSRRVRVLAVAADQTPPPAPPSE-PANSPSRLLRELAQRKK 71

Query: 82  ATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWID 141
           A SPKKK PPRRFIL+PPLDD++L  RFL+SPQL+LK+ PLLSSCLPS+ L+ AD+TW+D
Sbjct: 72  AVSPKKKHPPRRFILKPPLDDERLTRRFLSSPQLSLKALPLLSSCLPSAPLSTADRTWMD 131

Query: 142 EYLLEAKQALGYPLEPSDSY--GDDNPAKQFDTLLYLAFQH--PSCERTKARHIRSGHSR 201
           EYLLEAKQALGYPL PS++   GDD PA+ FD L YLAFQH  PS ERT+ RH+R+GHSR
Sbjct: 132 EYLLEAKQALGYPLAPSETLGEGDDCPARHFDVLFYLAFQHLDPSSERTRMRHVRNGHSR 191

Query: 202 LLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAASLQNLIFPYDD 261
           L FLGQYV+ELA  E+FLQRYPRESPGPMRERVFALIGK+ LP+W+KAASL NL+FPYDD
Sbjct: 192 LWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKKVLPRWLKAASLHNLVFPYDD 251

Query: 262 MDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFFVNLKPHILSSN 321
           +DKMIRKDREPP K                                              
Sbjct: 252 LDKMIRKDREPPSK---------------------------------------------- 311

Query: 322 LVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEECEPRLRRQL 381
                           +VFWA+FGAIYLCFGMPEVYRVLFE FGMDPD E C+P+LRRQL
Sbjct: 312 ----------------AVFWAIFGAIYLCFGMPEVYRVLFEAFGMDPDDESCQPKLRRQL 371

Query: 382 EDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQ 441
           EDVDYVSVEFE ++++WQD+    PP DALFAHPRLFRACVPPGMHRFRGNIWD+DSRP+
Sbjct: 372 EDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFRGNIWDFDSRPK 431

Query: 442 VMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQ 501
           VM  LGYP+P+ D+IP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEY+GQKIQ
Sbjct: 432 VMTTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYVGQKIQ 491

Query: 502 DIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEKVQDAYENNR 561
           D+VMAERLLMKHLDAPG+WL EKHRR LMNK+CGRYLR+K+L   IIY E VQD +E+NR
Sbjct: 492 DLVMAERLLMKHLDAPGRWLAEKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQDRFEHNR 525

Query: 562 RLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           RLRNP+TT+VQQALHGL+Y VYGKPDVRRLMFEVFDFEQ+QPKAV
Sbjct: 552 RLRNPSTTSVQQALHGLAYCVYGKPDVRRLMFEVFDFEQVQPKAV 525

[Close]
BLAST of ClCG01G017380 vs. ExPASy Swiss-Prot
Match: Q5L0Q3 (Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rnc PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-05
Identity = 26/82 (31.71%), Postives = 43/82 (52.44%), Query Frame = 0 

Query: 165 DTLLYLAFQHPSCERTKARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERV 224
           + LL  AF H S      R +   + RL FLG  V+EL +++Y  Q++P  S G + +  
Sbjct: 32  EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91

Query: 225 FALIGKRNLPKWIKAASLQNLI 247
            A++ + +L K+  A S   L+
Sbjct: 92  AAIVCEPSLVKFANALSFGELV 113

[Close]
BLAST of ClCG01G017380 vs. ExPASy Swiss-Prot
Match: A4IM67 (Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=rnc PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.7e-05
Identity = 27/84 (32.14%), Postives = 43/84 (51.19%), Query Frame = 0 

Query: 163 QFDTLLYLAFQHPSCERTKARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRE 222
           Q + LL  AF H S      R     + RL FLG  V+EL +++Y  Q++P  S G + +
Sbjct: 30  QNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTK 89

Query: 223 RVFALIGKRNLPKWIKAASLQNLI 247
              A++ + +L K+  A S   L+
Sbjct: 90  LRAAIVCEPSLVKFANALSFGELV 113

[Close]
BLAST of ClCG01G017380 vs. ExPASy TrEMBL
Match: A0A1S3B1J9 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484834 PE=4 SV=1)

HSP 1 Score: 1043.1 bits (2696), Expect = 4.4e-301
Identity = 523/596 (87.75%), Postives = 527/596 (88.42%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSS NLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTW+DEYLLEAKQALGYPL+PSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLDPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFL RYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLLRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFF 300
           SLQNLIFPYDDMDKMIRKDREPPVK                                   
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVK----------------------------------- 300

Query: 301 VNLKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360
                                      SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA
Sbjct: 301 ---------------------------SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360

Query: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFR 420
           EECEPRLRRQLEDVDYVSVEFEDKRISWQDM    PPEDALFAHPRLFRACVPPGMHRFR
Sbjct: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDMISYKPPEDALFAHPRLFRACVPPGMHRFR 420

Query: 421 GNIWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480
           GNIWDYDSRPQVMQALGYP+PV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY
Sbjct: 421 GNIWDYDSRPQVMQALGYPLPVVDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480

Query: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 540
           ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS
Sbjct: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 534

Query: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of ClCG01G017380 vs. ExPASy TrEMBL
Match: A0A0A0KGG7 (RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G494980 PE=4 SV=1)

HSP 1 Score: 1026.9 bits (2654), Expect = 3.3e-296
Identity = 514/596 (86.24%), Postives = 525/596 (88.09%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPK 60
           MELSSSFVKLSSPS NYSFSSSLTPFIVKIHPNHPIFPNPSSANLR+FAVA+DPQQELPK
Sbjct: 1   MELSSSFVKLSSPS-NYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDK+LAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTW+DEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRL FLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFF 300
           SLQNLIFPYDDMDK+IRKDREPPVK                                   
Sbjct: 241 SLQNLIFPYDDMDKIIRKDREPPVK----------------------------------- 300

Query: 301 VNLKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360
                                      SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA
Sbjct: 301 ---------------------------SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360

Query: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFR 420
           +ECEPRLRRQLEDVDYVSVEFEDKRI WQDM    PPEDALFAHPRLFRACVPPGMHRFR
Sbjct: 361 KECEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYKPPEDALFAHPRLFRACVPPGMHRFR 420

Query: 421 GNIWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480
           GNIWDYDSRPQVMQALGYP+PV DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY
Sbjct: 421 GNIWDYDSRPQVMQALGYPLPVTDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480

Query: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 540
           ERLEYLGQKIQDIVMAERLLMKHLDAPG+WLQ KHRRLLMNKFCGRYLRE+YLHKLIIYS
Sbjct: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGRWLQVKHRRLLMNKFCGRYLRERYLHKLIIYS 533

Query: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRR+MFEVFDFEQIQPKAV
Sbjct: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRIMFEVFDFEQIQPKAV 533

[Close]
BLAST of ClCG01G017380 vs. ExPASy TrEMBL
Match: A0A6J1BVK6 (ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005910 PE=4 SV=1)

HSP 1 Score: 1023.8 bits (2646), Expect = 2.8e-295
Identity = 511/596 (85.74%), Postives = 525/596 (88.09%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPK 60
           MELSSSFV+L+SP+PNYSFSSSLTPF  KI+PN+P FPNP+S NLRIFAVA+DPQQELPK
Sbjct: 1   MELSSSFVQLASPTPNYSFSSSLTPFHFKIYPNNPSFPNPTSGNLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELAERKRATSPKK+VPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELAERKRATSPKKRVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTW+DEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDNYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRLLFLGQYV+ELALAEYFLQRYPRESPGPMRERVFALIGKR+LPKWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRSLPKWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFF 300
           SLQNLIFPYDDMDKMIRKDREPPVK                                   
Sbjct: 241 SLQNLIFPYDDMDKMIRKDREPPVK----------------------------------- 300

Query: 301 VNLKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360
                                      SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA
Sbjct: 301 ---------------------------SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360

Query: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFR 420
           EECEPRLRRQLEDVDYVSVEFEDK+ISWQDM    PPEDALFAHPRLFRACVPPGMHRFR
Sbjct: 361 EECEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFR 420

Query: 421 GNIWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480
           GNIWDYDSRPQVMQALGYPVPV+DKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY
Sbjct: 421 GNIWDYDSRPQVMQALGYPVPVSDKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480

Query: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 540
           ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS
Sbjct: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 534

Query: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           EKVQDAYENNRRLRNPATTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYAVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of ClCG01G017380 vs. ExPASy TrEMBL
Match: A0A6J1GEC3 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453180 PE=4 SV=1)

HSP 1 Score: 1020.4 bits (2637), Expect = 3.0e-294
Identity = 509/596 (85.40%), Postives = 521/596 (87.42%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPK 60
           MELSS FVKLSSP+PN+SFSSSLTPF+VKIHPN+P   NPSS  LRIFAVA+DPQQELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTW+DEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFF 300
           SLQNLIFPYDDMDKM+RKDREPPVK                                   
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVK----------------------------------- 300

Query: 301 VNLKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360
                                      SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA
Sbjct: 301 ---------------------------SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360

Query: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFR 420
           EECEPRLRRQLEDVDYVSVEFEDK+ISWQDM    PPEDALFAHPRLFRACVPPGMHRFR
Sbjct: 361 EECEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFR 420

Query: 421 GNIWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480
           GNIWDYDSRPQVMQALGYPVPV DKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCY
Sbjct: 421 GNIWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480

Query: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 540
           ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLI+YS
Sbjct: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYS 534

Query: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           E+VQDAYENNRRLRNPATTAVQQALHGLSY VYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 541 EQVQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of ClCG01G017380 vs. ExPASy TrEMBL
Match: A0A6J1IRK8 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477828 PE=4 SV=1)

HSP 1 Score: 1014.2 bits (2621), Expect = 2.2e-292
Identity = 505/596 (84.73%), Postives = 521/596 (87.42%), Query Frame = 0 

Query: 1   MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPK 60
           MELSS FVKLSSP+PN+SFSSSLTPF+VKIHPN+P   NPSS +LRIFAVA+DP+QELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVAVDPRQELPK 60

Query: 61  NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKEL ERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTW++EYLLEAKQALGYPLEP DSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMEEYLLEAKQALGYPLEPFDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLP+WIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFF 300
           SLQNLIFPYDDMDKM+RKDREPPVK                                   
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVK----------------------------------- 300

Query: 301 VNLKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360
                                      SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA
Sbjct: 301 ---------------------------SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA 360

Query: 361 EECEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFR 420
           EECEPRLRRQLEDVDYVSVEFEDK+ISWQDM    PPEDALFAHPRLFRACVPPGMHRFR
Sbjct: 361 EECEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFR 420

Query: 421 GNIWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480
           GNIWDYDSRPQVMQALGYPVPV DKIP+ITEARNIELGLGLQLCFLHPSKHKFEHPRFCY
Sbjct: 421 GNIWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCY 480

Query: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYS 540
           ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLI+YS
Sbjct: 481 ERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYS 534

Query: 541 EKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           E+VQDAYENNRRLRNPATTAVQQ+LHGLSY VYGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 541 EQVQDAYENNRRLRNPATTAVQQSLHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAV 534

[Close]
BLAST of ClCG01G017380 vs. TAIR 10
Match: AT4G37510.1 (Ribonuclease III family protein )

HSP 1 Score: 861.7 bits (2225), Expect = 3.5e-250
Identity = 433/594 (72.90%), Postives = 475/594 (79.97%), Query Frame = 0 

Query: 4   SSSFVKL-SSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRIFAVAIDPQQELPKNN 63
           SSS +++ SS +P  SFSSS++ F  K      I       NLRI A      Q LP+++
Sbjct: 9   SSSLLRICSSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDS 68

Query: 64  PQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLP 123
           PQRLLKELA+RK AT PKKKVPP+RFILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLP
Sbjct: 69  PQRLLKELAQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLP 128

Query: 124 SSRLNNADKTWIDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKA 183
           SS+LNNADKTWIDEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHPSC+R +A
Sbjct: 129 SSKLNNADKTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARA 188

Query: 184 RHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAASL 243
           RH+++GHSRL FLGQYV+ELAL E+FLQRYPRESPGPMRERVFALIGKR LPKWIKAASL
Sbjct: 189 RHVKNGHSRLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASL 248

Query: 244 QNLIFPYDDMDKMIRKDREPPVKIDRPEETLRSWHLIRVNVQAIIAAPGGLVPSGQFFVN 303
           QNLIFPYDDMDK+IRK+REPPVK                                     
Sbjct: 249 QNLIFPYDDMDKLIRKEREPPVK------------------------------------- 308

Query: 304 LKPHILSSNLVPAGYGRHSMNLASLSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 363
                                    SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDA+E
Sbjct: 309 -------------------------SVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADE 368

Query: 364 CEPRLRRQLEDVDYVSVEFEDKRISWQDM----PPEDALFAHPRLFRACVPPGMHRFRGN 423
           C+PR RRQLEDVDYVSVEFE K++ WQD+    PPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 369 CQPRSRRQLEDVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGN 428

Query: 424 IWDYDSRPQVMQALGYPVPVADKIPDITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 483
           IWD+DS+P+VMQ LGYP+ + D+I +ITEARNIELGLGLQLCFLHPSKHKFEHPRFC+ER
Sbjct: 429 IWDFDSKPKVMQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFER 488

Query: 484 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIIYSEK 543
           LEY+GQKIQDI MAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREK LH  IIYSE+
Sbjct: 489 LEYVGQKIQDIAMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEE 537

Query: 544 VQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           V D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 549 VHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 537

[Close]
BLAST of ClCG01G017380 vs. TAIR 10
Match: AT2G48121.2 (LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1). )

HSP 1 Score: 141.0 bits (354), Expect = 3.1e-33
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 0 

Query: 516 MNKFCGRYLREKYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVR 575
           MNKFCGRYLREK LH  IIYSE+V D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVR
Sbjct: 1   MNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVR 60

Query: 576 RLMFEVFDFEQIQPKAV 593
           RLMFEVFDFEQIQPKAV
Sbjct: 61  RLMFEVFDFEQIQPKAV 77

[Close]
BLAST of ClCG01G017380 vs. TAIR 10
Match: AT2G48121.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT4G37510.1). )

HSP 1 Score: 105.1 bits (261), Expect = 1.9e-22
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 536 SEKVQDAYENNRRLRNPATTAVQQALHGLSYVVYGKPDVRRLMFEVFDFEQIQPKAV 593
           +E+V D YE+NRRLRNPATTAVQQA+HGL+Y +YGKPDVRRLMFEVFDFEQIQPKAV
Sbjct: 19  TEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTIYGKPDVRRLMFEVFDFEQIQPKAV 75

The following BLAST results are available for this feature:
BLAST of ClCG01G017380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038883471.14.8e-30288.09ribonuclease III domain-containing protein RNC1, chloroplastic [Benincasa hispid... [more]
XP_008440359.19.1e-30187.75PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucum... [more]
XP_004141878.16.7e-29686.24ribonuclease III domain-containing protein RNC1, chloroplastic isoform X1 [Cucum... [more]
XP_022133289.15.7e-29585.74ribonuclease III domain-containing protein RNC1, chloroplastic [Momordica charan... [more]
XP_023543359.14.8e-29485.40ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita p... [more]
BLAST of ClCG01G017380 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SZV04.9e-24972.90Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis th... [more]
Q8S1Z05.8e-22670.22Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa s... [more]
A6YSL11.0e-22566.84Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=45... [more]
Q5L0Q32.7e-0531.71Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rnc PE=3... [more]
A4IM672.7e-0532.14Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=r... [more]
BLAST of ClCG01G017380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B1J94.4e-30187.75ribonuclease III domain-containing protein RNC1, chloroplastic OS=Cucumis melo O... [more]
A0A0A0KGG73.3e-29686.24RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G494980 P... [more]
A0A6J1BVK62.8e-29585.74ribonuclease III domain-containing protein RNC1, chloroplastic OS=Momordica char... [more]
A0A6J1GEC33.0e-29485.40ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita... [more]
A0A6J1IRK82.2e-29284.73ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita... [more]
BLAST of ClCG01G017380 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G37510.13.5e-25072.90Ribonuclease III family protein [more]
AT2G48121.23.1e-3385.71LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Ribonucle... [more]
AT2G48121.11.9e-2284.21BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAI... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainSMARTSM00535riboneu5coord: 166..365
e-value: 5.8E-19
score: 79.0
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 167..246
score: 11.474335
IPR000999Ribonuclease III domainCDDcd00593RIBOccoord: 166..359
e-value: 1.95264E-20
score: 85.7422
IPR000999Ribonuclease III domainCDDcd00593RIBOccoord: 457..582
e-value: 2.19376E-20
score: 85.357
IPR036389Ribonuclease III, endonuclease domain superfamilyGENE3D1.10.1520.10Ribonuclease III domaincoord: 163..358
e-value: 1.0E-11
score: 46.7
IPR036389Ribonuclease III, endonuclease domain superfamilyGENE3D1.10.1520.10Ribonuclease III domaincoord: 449..585
e-value: 1.4E-11
score: 46.2
IPR036389Ribonuclease III, endonuclease domain superfamilySUPERFAMILY69065RNase III domain-likecoord: 134..355
IPR036389Ribonuclease III, endonuclease domain superfamilySUPERFAMILY69065RNase III domain-likecoord: 457..583
NoneNo IPR availablePANTHERPTHR11207:SF21RIBONUCLEASE III DOMAIN-CONTAINING PROTEIN RNC1, CHLOROPLASTICcoord: 325..589
coord: 1..265
IPR011907Ribonuclease IIIPANTHERPTHR11207RIBONUCLEASE IIIcoord: 325..589
coord: 1..265

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G017380.2ClCG01G017380.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010468 regulation of gene expression
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0006396 RNA processing
biological_process GO:0016075 rRNA catabolic process
cellular_component GO:0005634 nucleus
molecular_function GO:0003725 double-stranded RNA binding
molecular_function GO:0004525 ribonuclease III activity
molecular_function GO:0003723 RNA binding