ClCG01G011330 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G011330
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Reverse transcriptase
Location	CG_Chr01: 18600195 .. 18601150 (-)
RNA-Seq Expression	ClCG01G011330
Synteny	ClCG01G011330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCGACAAACCAAACGAGGTAGGCAAGCAGACGCCGAAACATCGCATGTTATCGGTGGATTTCGAGAAGGTTCGGAGGGAGATTCTAGTAACCCTCAGGTAAATATGGAAGATCAAATCTTTAATAGAATAGCCCAAGGGTTGGCATCTAGTGCTGAAACAGCTCAAGGAGATCCCGAGAGAAAGTATGAGATCAAGAGGTTCAAAGCCTTAGAAGCTCAGGTATTTGAGGGAATCACTGATCCTGAAGATGTCGAAGTATGACTAAACCAGATAGAGAAATGCTTCAGGGTCATGCGTTGTCCTGAAGAGAGGAAACTTGATTTGGTTACTTATTTGCTCTAGAAAGGAGTGGAGGATTGGTGGAAGTTGATAGAAAATAGGGGAAATGATGCAGATCCTCTAACGTGGGTAGCCTTTAAGAAGGCTTTTCAAGATAAATATTACCCACATACATATTGTGACGAGAAGAGGGATGAGTTTTTAAGATTGGTGCAAGGGATATGACTGTAGCTGAGTACGAAAAGAAGTTTACAAAGCTAGCTAAGTACGCTCTAACAATGATTGTGGATGAAGCTGATAAGTGCAAGTGTTTTGTGTTAGGTTTGCATAGTAAAATCCGTACTCCAGTTACAACAAGTATAGTGTGGACAAACTTTGCACGAATGATTGAGGCTGCCATGAGAGCTAAAAAGAGTATAACTGGTGGGAAGCCTGAGAGGGAAGGAAATAAAGGAGATTATAGAACGGGACAAGCTTTGGGTACATCTCGGGAACAGTCTTACCGAGGTGATAGTAGAAGGTTTGTACCCAGTGTTTCTAGTAATAGAAGTTTTAAAGCTTGATTTGGCGGATCATACTTTACAAGACCTAGAGGTGGTGGTTCAAGACAAACTCAGAGGGGTTTTCCTCAGACTTTGGGACCTCCAAGTGGTTCATAGTTTAGGCAACTGA

mRNA sequence

ATGCCCGACAAACCAAACGAGGTAGGCAAGCAGACGCCGAAACATCGCATGTTATCGGTGGATTTCGAGAAGGTTCGGAGGGAGATTCTAGTAACCCTCAGTGCTGAAACAGCTCAAGGAGATCCCGAGAGAAAGTATGAGATCAAGAGGTTCAAAGCCTTAGAAGCTCAGGTATTTGAGGGAATCACTGATCCTGAAGATGTCGAAAAAGGAGTGGAGGATTGGTGGAAGTTGATAGAAAATAGGGGAAATGATGCAGATCCTCTAACGTGGATTGGTGCAAGGGATATGACTGTAGCTGAGTACGAAAAGAAGTTTACAAAGCTAGCTAAGTACGCTCTAACAATGATTGTGGATGAAGCTGATAAGTGCAAGTGTTTTGTGTTAGGTTTGCATAGTAAAATCCGTACTCCAGTTACAACAAGTATAGTGTGGACAAACTTTGCACGAATGATTGAGGCTGCCATGAGAGCTAAAAAGAGTATAACTGGTGGGAAGCCTGAGAGGGAAGGAAATAAAGGAGATTATAGAACGGGACAAGCTTTGGGTACATCTCGGGAACAGTCTTACCGAGGTGATAGTAGAAGGTTTGTACCCAGTGTTTCTAACCTAGAGGTGGTGGTTCAAGACAAACTCAGAGGGGTTTTCCTCAGACTTTGGGACCTCCAAGTGGTTCATAGTTTAGGCAACTGA

Coding sequence (CDS)

ATGCCCGACAAACCAAACGAGGTAGGCAAGCAGACGCCGAAACATCGCATGTTATCGGTGGATTTCGAGAAGGTTCGGAGGGAGATTCTAGTAACCCTCAGTGCTGAAACAGCTCAAGGAGATCCCGAGAGAAAGTATGAGATCAAGAGGTTCAAAGCCTTAGAAGCTCAGGTATTTGAGGGAATCACTGATCCTGAAGATGTCGAAAAAGGAGTGGAGGATTGGTGGAAGTTGATAGAAAATAGGGGAAATGATGCAGATCCTCTAACGTGGATTGGTGCAAGGGATATGACTGTAGCTGAGTACGAAAAGAAGTTTACAAAGCTAGCTAAGTACGCTCTAACAATGATTGTGGATGAAGCTGATAAGTGCAAGTGTTTTGTGTTAGGTTTGCATAGTAAAATCCGTACTCCAGTTACAACAAGTATAGTGTGGACAAACTTTGCACGAATGATTGAGGCTGCCATGAGAGCTAAAAAGAGTATAACTGGTGGGAAGCCTGAGAGGGAAGGAAATAAAGGAGATTATAGAACGGGACAAGCTTTGGGTACATCTCGGGAACAGTCTTACCGAGGTGATAGTAGAAGGTTTGTACCCAGTGTTTCTAACCTAGAGGTGGTGGTTCAAGACAAACTCAGAGGGGTTTTCCTCAGACTTTGGGACCTCCAAGTGGTTCATAGTTTAGGCAACTGA

Protein sequence

MPDKPNEVGKQTPKHRMLSVDFEKVRREILVTLSAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVEKGVEDWWKLIENRGNDADPLTWIGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRTGQALGTSREQSYRGDSRRFVPSVSNLEVVVQDKLRGVFLRLWDLQVVHSLGN

Homology

[Close]

BLAST of ClCG01G011330 vs. NCBI nr
Match: KAA0060484.1 (Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 2.8e-24
Identity = 76/225 (33.78%), Postives = 108/225 (48.00%), Query Frame = 0


Query: 34  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE------------------------ 93
           S E+ Q DPE+KY I+R KAL A  F G T+P D E                        
Sbjct: 44  SGESTQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELA 103

Query: 94  -----KGVEDWWKLIENRGNDADPLTW--------------------------IGARDMT 153
                 G EDWW++ E+R      ++W                          +    MT
Sbjct: 104 AFLLQNGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 163

Query: 154 VAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRA 204
           +AEYEKK+T+L+ YA  +I DE ++CK F  GL  +IRTPVT    W +F++++EAA+R 
Sbjct: 164 IAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAALRV 223

[Close]

BLAST of ClCG01G011330 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 4.8e-24
Identity = 75/196 (38.27%), Postives = 102/196 (52.04%), Query Frame = 0


Query: 37  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE--------------------------- 96
           +AQ DPE+KY  +R KAL A  F G T+P DVE                           
Sbjct: 59  SAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFL 118

Query: 97  --KGVEDWWKLIENRGNDADPLTWIGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCF 156
                EDWW++ E+R              MTVAEYEKK+T+L+KYA  +IVDE ++CK F
Sbjct: 119 LQNDAEDWWRMEESRRRTTG--------TMTVAEYEKKYTELSKYATRVIVDEGERCKRF 178

Query: 157 VLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRTGQALGTSRE 204
             GL  +IRTPVT    W +F++++E A+R +KS+   K ERE +K       ++  +R 
Sbjct: 179 EEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLNERKREREASKNLRTFSSSMHRNRP 238

[Close]

BLAST of ClCG01G011330 vs. NCBI nr
Match: TYJ95881.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-23
Identity = 76/222 (34.23%), Postives = 106/222 (47.75%), Query Frame = 0


Query: 37  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE--------------------------- 96
           +AQ DPE+KY  +R KAL A  F G T+P DVE                           
Sbjct: 59  SAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFL 118

Query: 97  --KGVEDWWKLIENRGNDADPLTW--------------------------IGARDMTVAE 156
                EDWW++ E+R      ++W                          +    MTVAE
Sbjct: 119 LQNDAEDWWRMEESRRRTTGDMSWDEFKKAFFDKFYPRSFRDAKHNEFVRLTQGTMTVAE 178

Query: 157 YEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKS 204
           YEKK+T+L+KYA  +IVDE ++CK F  GL  +IRTPVT    W +F++++E A+R +KS
Sbjct: 179 YEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVALRVEKS 238

[Close]

BLAST of ClCG01G011330 vs. NCBI nr
Match: KAA0035225.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-22
Identity = 68/171 (39.77%), Postives = 93/171 (54.39%), Query Frame = 0


Query: 37  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE--------------------------- 96
           +AQ DPE+KY I+R KAL A  F G T+P D E                           
Sbjct: 78  SAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELASFL 137

Query: 97  -------KGVEDWWKLIENRGNDADPLTWIGARDMTVAEYEKKFTKLAKYALTMIVDEAD 156
                  KG EDWW++ E+R      +     R MTV +YEKK+T+L+KYA  +I DE +
Sbjct: 138 LQNGGGAKG-EDWWRMEESRRRITSDI-----RSMTVTKYEKKYTELSKYATRVIEDEVE 197

Query: 157 KCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNK 174
           +CK F  GL  +IRTPVTT   W +F++++EAA+R +KS+   K ERE +K
Sbjct: 198 RCKRFEEGLQEEIRTPVTTCADWNDFSKLVEAALRVEKSLNERKRERETSK 242

[Close]

BLAST of ClCG01G011330 vs. NCBI nr
Match: TYK15233.1 (uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-21
Identity = 76/223 (34.08%), Postives = 105/223 (47.09%), Query Frame = 0


Query: 34  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE------------------------ 93
           S E+AQ DP++KY I+R KAL A  F G T+P DVE                        
Sbjct: 174 SGESAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELA 233

Query: 94  -----KGVEDWWKLIENRGNDADPLTW--------------------------IGARDMT 153
                 G EDWW++ E+R      ++W                          +    MT
Sbjct: 234 AFLLQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 293

Query: 154 VAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRA 202
           VAEYEKK+T+L+KYA  +I DE ++ K F  GL  +IRT VT    W +F++++EAA+R 
Sbjct: 294 VAEYEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRTSVTACADWNDFSKLVEAALRV 353

[Close]

BLAST of ClCG01G011330 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-24
Identity = 76/225 (33.78%), Postives = 108/225 (48.00%), Query Frame = 0


Query: 34  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE------------------------ 93
           S E+ Q DPE+KY I+R KAL A  F G T+P D E                        
Sbjct: 44  SGESTQSDPEKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELA 103

Query: 94  -----KGVEDWWKLIENRGNDADPLTW--------------------------IGARDMT 153
                 G EDWW++ E+R      ++W                          +    MT
Sbjct: 104 AFLLQNGAEDWWRMEESRRRTTGDISWNEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 163

Query: 154 VAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRA 204
           +AEYEKK+T+L+ YA  +I DE ++CK F  GL  +IRTPVT    W +F++++EAA+R 
Sbjct: 164 IAEYEKKYTELSMYATRVIEDEVERCKRFEEGLREEIRTPVTACADWNDFSKLVEAALRV 223

[Close]

BLAST of ClCG01G011330 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-24
Identity = 75/196 (38.27%), Postives = 102/196 (52.04%), Query Frame = 0


Query: 37  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE--------------------------- 96
           +AQ DPE+KY  +R KAL A  F G T+P DVE                           
Sbjct: 59  SAQSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRYLEDRKVELAAFL 118

Query: 97  --KGVEDWWKLIENRGNDADPLTWIGARDMTVAEYEKKFTKLAKYALTMIVDEADKCKCF 156
                EDWW++ E+R              MTVAEYEKK+T+L+KYA  +IVDE ++CK F
Sbjct: 119 LQNDAEDWWRMEESRRRTTG--------TMTVAEYEKKYTELSKYATRVIVDEGERCKRF 178

Query: 157 VLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNKGDYRTGQALGTSRE 204
             GL  +IRTPVT    W +F++++E A+R +KS+   K ERE +K       ++  +R 
Sbjct: 179 EEGLREEIRTPVTACADWNDFSKLVEVALRVEKSLNERKREREASKNLRTFSSSMHRNRP 238

[Close]

BLAST of ClCG01G011330 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-22
Identity = 68/171 (39.77%), Postives = 93/171 (54.39%), Query Frame = 0


Query: 37  TAQGDPERKYEIKRFKALEAQVFEGITDPEDVE--------------------------- 96
           +AQ DPE+KY I+R KAL A  F G T+P D E                           
Sbjct: 78  SAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELASFL 137

Query: 97  -------KGVEDWWKLIENRGNDADPLTWIGARDMTVAEYEKKFTKLAKYALTMIVDEAD 156
                  KG EDWW++ E+R      +     R MTV +YEKK+T+L+KYA  +I DE +
Sbjct: 138 LQNGGGAKG-EDWWRMEESRRRITSDI-----RSMTVTKYEKKYTELSKYATRVIEDEVE 197

Query: 157 KCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRAKKSITGGKPEREGNK 174
           +CK F  GL  +IRTPVTT   W +F++++EAA+R +KS+   K ERE +K
Sbjct: 198 RCKRFEEGLQEEIRTPVTTCADWNDFSKLVEAALRVEKSLNERKRERETSK 242

[Close]

BLAST of ClCG01G011330 vs. ExPASy TrEMBL
Match: A0A5A7TBS0 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002900 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.4e-22
Identity = 76/223 (34.08%), Postives = 105/223 (47.09%), Query Frame = 0


Query: 34  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE------------------------ 93
           S E+AQ DP++KY I+R KAL A  F G T+P DVE                        
Sbjct: 138 SGESAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELA 197

Query: 94  -----KGVEDWWKLIENRGNDADPLTW--------------------------IGARDMT 153
                 G EDWW++ E+R      ++W                          +    MT
Sbjct: 198 AFLLQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 257

Query: 154 VAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRA 202
           VAEYEKK+T+L+KYA  +I DE ++ K F  GL  +IRT VT    W +F++++EAA+R 
Sbjct: 258 VAEYEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRTSVTACADWNDFSKLVEAALRV 317

[Close]

BLAST of ClCG01G011330 vs. ExPASy TrEMBL
Match: A0A5D3CTK6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00030 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.4e-22
Identity = 76/223 (34.08%), Postives = 105/223 (47.09%), Query Frame = 0


Query: 34  SAETAQGDPERKYEIKRFKALEAQVFEGITDPEDVE------------------------ 93
           S E+AQ DP++KY I+R KAL A  F G T+P DVE                        
Sbjct: 174 SGESAQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELA 233

Query: 94  -----KGVEDWWKLIENRGNDADPLTW--------------------------IGARDMT 153
                 G EDWW++ E+R      ++W                          +    MT
Sbjct: 234 AFLLQNGAEDWWRMEESRRRTTGDISWDEFKKAFFDKFYPRSFRDAKRNEFLRLTQGSMT 293

Query: 154 VAEYEKKFTKLAKYALTMIVDEADKCKCFVLGLHSKIRTPVTTSIVWTNFARMIEAAMRA 202
           VAEYEKK+T+L+KYA  +I DE ++ K F  GL  +IRT VT    W +F++++EAA+R 
Sbjct: 294 VAEYEKKYTELSKYATRVIEDEVERYKRFEEGLREEIRTSVTACADWNDFSKLVEAALRV 353

The following BLAST results are available for this feature:

BLAST of ClCG01G011330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060484.1	2.8e-24	33.78	Gag protease polyprotein-like protein [Cucumis melo var. makuwa] >TYK18569.1 Gag...	[more]
KAA0036813.1	4.8e-24	38.27	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYJ95881.1	2.4e-23	34.23	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0035225.1	4.5e-22	39.77	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21839.1 D...	[more]
TYK15233.1	1.3e-21	34.08	uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG01G011330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G011330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZM6	1.4e-24	33.78	Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7T1M0	2.3e-24	38.27	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]
A0A5D3DES5	2.2e-22	39.77	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TBS0	6.4e-22	34.08	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3CTK6	6.4e-22	34.08	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of ClCG01G011330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G011330.1	ClCG01G011330.1	mRNA