ChyUNG236620 (gene) Cucumber (hystrix) v1

Overview
NameChyUNG236620
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionCytochrome b6/f complex subunit IV
Locationscaffold57_size79085: 58050 .. 58480 (+)
RNA-Seq ExpressionChyUNG236620
SyntenyChyUNG236620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAACCCGCATGGCCCAATGATCTTTTATATATTTTTCCAGTAGTCATTCTAGGTACTATTGCATGTAACGTGGGCTTAGCGGTTCTAGAACCATCAATGATTGGTGAACCCGCAGATCCATTTGCAACTCCTTTGGAAATATTGCCGGAATGGTATTTCTTTCCCGTATTTCAAATACTTCGTACAGTACCAAATAAGTTATTGGGTGTTCTTTTAATGGTTTCCGTACCGGCGGGATTATTAACTGTACCATTTTTGGAGAATGTCAATAAATTCCAAAATCCATTTCGTCGTCCAGTAGCGACAACCGTCTTTTTGATTGGTACCGCAGTAGCCCTTTGGTTGGGTATTGGAGCAACATTACCGATTGATAAATCCCTAACTTTAGGTCTTTTTTAAATTGATTCAATTGTCAAATAAATAAAATATC

mRNA sequence

AGAACCCGCATGGCCCAATGATCTTTTATATATTTTTCCAGTAGTCATTCTAGGTACTATTGCATGTAACGTGGGCTTAGCGGTTCTAGAACCATCAATGATTGGTGAACCCGCAGATCCATTTGCAACTCCTTTGGAAATATTGCCGGAATGGTATTTCTTTCCCGTATTTCAAATACTTCGTACAGTACCAAATAAGTTATTGGGTGTTCTTTTAATGGTTTCCGTACCGGCGGGATTATTAACTGTACCATTTTTGGAGAATGTCAATAAATTCCAAAATCCATTTCGTCGTCCAGTAGCGACAACCGTCTTTTTGATTGGTACCGCAGTAGCCCTTTGGTTGGGTATTGGAGCAACATTACCGATTGATAAATCCCTAACTTTAGGTCTTTTTTAAATTGATTCAATTGTCAAATAAATAAAATATC

Coding sequence (CDS)

AGAACCCGCATGGCCCAATGATCTTTTATATATTTTTCCAGTAGTCATTCTAGGTACTATTGCATGTAACGTGGGCTTAGCGGTTCTAGAACCATCAATGATTGGTGAACCCGCAGATCCATTTGCAACTCCTTTGGAAATATTGCCGGAATGGTATTTCTTTCCCGTATTTCAAATACTTCGTACAGTACCAAATAAGTTATTGGGTGTTCTTTTAATGGTTTCCGTACCGGCGGGATTATTAACTGTACCATTTTTGGAGAATGTCAATAAATTCCAAAATCCATTTCGTCGTCCAGTAGCGACAACCGTCTTTTTGATTGGTACCGCAGTAGCCCTTTGGTTGGGTATTGGAGCAACATTACCGATTGATAAATCCCTAACTTTAGGTCTTTTTTAAATTGATTCAATTGTCAAATAAATAAAATATC

Protein sequence

RTRMAQ*SFIYFSSSHSRYYCM*RGLSGSRTINDW*TRRSICNSFGNIAGMVFLSRISNTSYSTK*VIGCSFNGFRTGGIINCTIFGECQ*IPKSISSSSSDNRLFDWYRSSPLVGYWSNITD**IPNFRSFLN*FNCQINKIX
Homology
BLAST of ChyUNG236620 vs. ExPASy TrEMBL
Match: A0A291S813 (Cytochrome b6/f complex subunit IV OS=Chenopodium album OX=3559 GN=petD PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.0e-33
Identity = 90/130 (69.23%), Postives = 95/130 (73.08%), Query Frame = 0

Query: 3   RMAQ*SFIYFSSSHSRYYCM*RGLSGSRTINDW*TRRSICNSFGNIAGMVFLSRISNTSY 62
           RMA  SFIYFS S+ RYYC+ R L   RTINDW    SICN FGNI  MVF S ISNTSY
Sbjct: 42  RMA--SFIYFSCSNFRYYCV-RRLGSFRTINDW-AGGSICNPFGNIT-MVFFSCISNTSY 101

Query: 63  STK*VIGCSFNGFRTGGIINCTIFGECQ*IPKSISSSSSDNRLFDWYRSSPLVGYWSNIT 122
           STK VI  SFNGF T GIIN + F +C  IPKSIS+SSS N LF WYRSSPL GYWSNIT
Sbjct: 102 STK-VIRRSFNGFSTRGIINRSFFRKC--IPKSISASSSYNCLFGWYRSSPLAGYWSNIT 161

Query: 123 D**IPNFRSF 133
              IPNFRSF
Sbjct: 162 Y--IPNFRSF 161

BLAST of ChyUNG236620 vs. ExPASy TrEMBL
Match: A0A1Q3B3W8 (Cytochrom_B_C domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06107 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.2e-07
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 92  IPKSISSSSSDNRLFDWYRSSPLVGYWSNIT 123
           IPKSISSSSSDN  FDWYRS P+VGYWSNIT
Sbjct: 120 IPKSISSSSSDNHFFDWYRSVPIVGYWSNIT 150

BLAST of ChyUNG236620 vs. ExPASy TrEMBL
Match: A0A2K1YGV5 (CYTB_CTER domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G074600 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.7e-04
Identity = 24/31 (77.42%), Postives = 24/31 (77.42%), Query Frame = 0

Query: 92  IPKSISSSSSDNRLFDWYRSSPLVGYWSNIT 123
           I KSISSS  DN  FDWY S PLVGYWSNIT
Sbjct: 121 ISKSISSSGRDNCFFDWYCSGPLVGYWSNIT 151

BLAST of ChyUNG236620 vs. NCBI nr
Match: ATL76573.1 (cytochrome b6/f complex subunit IV [Chenopodium album])

HSP 1 Score: 151 bits (381), Expect = 1.28e-43
Identity = 90/130 (69.23%), Postives = 95/130 (73.08%), Query Frame = 0

Query: 3   RMAQ*SFIYFSSSHSRYYCM*RGLSGSRTINDW*TRRSICNSFGNIAGMVFLSRISNTSY 62
           RMA  SFIYFS S+ RYYC+ R L   RTINDW    SICN FGNI  MVF S ISNTSY
Sbjct: 42  RMA--SFIYFSCSNFRYYCV-RRLGSFRTINDW-AGGSICNPFGNIT-MVFFSCISNTSY 101

Query: 63  STK*VIGCSFNGFRTGGIINCTIFGECQ*IPKSISSSSSDNRLFDWYRSSPLVGYWSNIT 122
           STK VI  SFNGF T GIIN + F +C  IPKSIS+SSS N LF WYRSSPL GYWSNIT
Sbjct: 102 STK-VIRRSFNGFSTRGIINRSFFRKC--IPKSISASSSYNCLFGWYRSSPLAGYWSNIT 161

Query: 123 D**IPNFRSF 132
              IPNFRSF
Sbjct: 162 Y--IPNFRSF 161

BLAST of ChyUNG236620 vs. NCBI nr
Match: GAV62584.1 (LOW QUALITY PROTEIN: Cytochrom_B_C domain-containing protein, partial [Cephalotus follicularis])

HSP 1 Score: 63.9 bits (154), Expect = 1.32e-09
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 92  IPKSISSSSSDNRLFDWYRSSPLVGYWSNIT 122
           IPKSISSSSSDN  FDWYRS P+VGYWSNIT
Sbjct: 120 IPKSISSSSSDNHFFDWYRSVPIVGYWSNIT 150

BLAST of ChyUNG236620 vs. NCBI nr
Match: PNT12261.1 (hypothetical protein POPTR_011G074600 [Populus trichocarpa])

HSP 1 Score: 54.7 bits (130), Expect = 4.35e-06
Identity = 24/31 (77.42%), Postives = 24/31 (77.42%), Query Frame = 0

Query: 92  IPKSISSSSSDNRLFDWYRSSPLVGYWSNIT 122
           I KSISSS  DN  FDWY S PLVGYWSNIT
Sbjct: 121 ISKSISSSGRDNCFFDWYCSGPLVGYWSNIT 151

BLAST of ChyUNG236620 vs. NCBI nr
Match: KAF3449784.1 (hypothetical protein FNV43_RR05862 [Rhamnella rubrinervis])

HSP 1 Score: 55.5 bits (132), Expect = 1.15e-05
Identity = 23/30 (76.67%), Postives = 23/30 (76.67%), Query Frame = 0

Query: 93  PKSISSSSSDNRLFDWYRSSPLVGYWSNIT 122
           P  I    SDNRLFDWYRSSPLVGYW NIT
Sbjct: 702 PLEILPECSDNRLFDWYRSSPLVGYWGNIT 731

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A291S8135.0e-3369.23Cytochrome b6/f complex subunit IV OS=Chenopodium album OX=3559 GN=petD PE=4 SV=... [more]
A0A1Q3B3W86.2e-0787.10Cytochrom_B_C domain-containing protein (Fragment) OS=Cephalotus follicularis OX... [more]
A0A2K1YGV53.7e-0477.42CYTB_CTER domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G... [more]
Match NameE-valueIdentityDescription
ATL76573.11.28e-4369.23cytochrome b6/f complex subunit IV [Chenopodium album][more]
GAV62584.11.32e-0987.10LOW QUALITY PROTEIN: Cytochrom_B_C domain-containing protein, partial [Cephalotu... [more]
PNT12261.14.35e-0677.42hypothetical protein POPTR_011G074600 [Populus trichocarpa][more]
KAF3449784.11.15e-0576.67hypothetical protein FNV43_RR05862 [Rhamnella rubrinervis][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ChyUNG236620.1ChyUNG236620.1mRNA