Chy9G158210 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G158210
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RNA-binding protein 24 isoform X1
Location	chrH09: 896938 .. 899644 (+)
RNA-Seq Expression	Chy9G158210
Synteny	Chy9G158210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCATCTAACTTAGCAAGTCAATTTGGAGATACCACTTATACCAAAGTTTTTGTGGGTGGTTTGGCTTGGGAAACTCACAAAGACACCATGAAGAAATACTTTGAACAATTTGGTGATATCTTGGAAGCCGTCGTTATTACCGACAAAGCCACTGGCCGATCCAAAGGCTATGGATTTGTAATATTAACAAAAATCTCTCTTCCTTCCCCCTTATATATCTTTCTTTCCCTTCTTCTAACCATGGAAGAGTTTTTCTTTTTCTTTCTTTTGCAGGTCACGTTTCGTGAACCCGATGCTGCCGTGAAAGCTTGTGTAGATGCTTCTCCAGTCATCGACGGTCGGAGAGCCAATTGTAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCCACACCTAAACACGGTATATTCACATTTAGATCTATCCATTATTTCATTCCCGTAACCATTTTAATTAACTTTTAGTATATATTATCACTTTGATCATAAACATGTTCATGTAACTACTCCTCTTACCGTTTGCTTACGATCCTTCATAACAAAACGTAAGGATTAAATGGTTAATTTATCTATCCATTAAGTGGTTGGTTGGTTGATTTTGGTTTTGTTTTTGAAATTGAATCATGTGTATAAAGAGAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGAAGAAATAATTTTAGGGTATTAAGCTCAAATTTCCAGAGTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACTACTACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCTTACAATCTCTATGGGTAATTTTCTTTCTTTCTTTCTTTTCTTCTTTTTTTATTTCTTTCTTTAATAATTATCTTTTCTATATATATTTCTCTCTCTACAACGTGACTTGCCAACTCATTTCTTCACTTTAATTACTTTATGACTAACAATAAAGTCTATTTTCCCCTCCCCTTCATAATCACTCTAAATCAAAATTCATATTGTTTCCTCTTTAAGTTACTACAACATTTATTTTCAGTTTGTTTTAATGTATATATCAATCAATATTATGCATGGCATTGCATGTATTTTTTGTAATTTTATTAATTGGGTATATATAGTTAATAACCTTTCTTGTTAATTAATTCTTTTCTTTTCTTTTCTTTTCTTTTTTTTAGGTACTCTTCTTATTCGCCAGACTACACTTACCCTACGGTTTGTACAAATTTCTTTCTTTTTTTTTCTTTTTTTTTTAATGGTTAAATTCATAAAGAAAATGGAATAATTATTGGGAAAATAAATGAATAATGAAGAAAGGTGAATAAGGGTATAATTGGAAATGGATAATTGAGTGGTCAAACTGTTGAAAAAGTGATAGTTTTGAGAAACCATTTCTCATCTTCTTTCTCTTGTCGTTTTATCCGACAGTTTTTGTTTCTACATTTAATGTTTTGTAACAGTATATATATATATATATCACTTTCTTACTGTTCTTTCTCTTTTTAAATAAAGAAAATTCTTTTCTAAGTTATTGCTATTTCACATTCTTTCATGCACATAATCATCAACCTGCCTCCTCCAACCCGACCATTCTACATTAAAAAGCTTACACGAATGCATCTCCACTTCACTTCTCACATTCTCATTCACAGTTTATCAAGTAATTACCAACTGTTTTCTGAAGAAATGCTTTCTTTTTCCTTTGTTATCGAAAGAGAATAATGCATTGAAAGGGGTGTTCTCGTTGTTTAATTGTTTAAGAACATATATTATCAGTTATCTGAAGGAGTACATAGGATTTAAGAAGACTGTACTAAATGAAAATGGTTAGTGTTTAATTAATTATGATTTTTTATGATTGAGGTTTTAACTTGTATTGAATTTCCAGAGCTATTACAATGTGTACGGCGGGGCAACTGCACAGTACCCCATGTACGGGACGGGTCCAGGTGGCATATTGAGCGGAGCGGCGGCAGCAGCAGCGGCATTCTACCCGTATTTCCAATTCGGGGAAGGAAGCGGTGGCAGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTATCCTCATCATCTGTTTCAATACTCGGCCGCGATTAATTCAACTGCTGCAACAACTTTCCCTCAGCATTATGCTGCTCCTCCTATGTCTCTTCCTCCCACGCCCCCCACTTTGCCATCAGGTTTGTTTGTTACGTTGTTAACTCGTTTTTATATATATAATGTTGTTTCATTATGTTTATGTTAGTGTTAATACATGAATAAAAATGATTAATAATTCATTACAAAGAATGTCTCTAGCTAGATTTTTAGAGTTGCATTTGCATTTGAACCTATAAAAAGAGTTGAGAGTAGTATTAAAGAAAGATTATGTATCTATATAATTTGTGTTTAAACGGTTTTTGTTAGACTAATCGTATTAACACAATTTCATGAAACAAATATTGATGGTTTGTGTTTATATAGTAACTGTAGTAAAGATATTTTTTAAGGTTTTGAAAGTTGGATGGTGTTTTTTAAACTTTGATTAAAATTCAAAGGTATTTTAATTTTCATATAAAGTATAAAGTTTAGGAACATTTTTATATATTTAGTCCTTTATTTAAGTTGGAGAGAATGAAAGAAAGACGTACTAACATCTTTGACAGTGTTTTTTGCTATTCCACAGGCGTGACCATGGCTCTTCCTGCACCAATTCCACATCGTTAG

mRNA sequence

ATGACTCCATCTAACTTAGCAAGTCAATTTGGAGATACCACTTATACCAAAGTTTTTGTGGGTGGTTTGGCTTGGGAAACTCACAAAGACACCATGAAGAAATACTTTGAACAATTTGGTGATATCTTGGAAGCCGTCGTTATTACCGACAAAGCCACTGGCCGATCCAAAGGCTATGGATTTGTCACGTTTCGTGAACCCGATGCTGCCGTGAAAGCTTGTGTAGATGCTTCTCCAGTCATCGACGGTCGGAGAGCCAATTGTAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCCACACCTAAACACGAGAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGAAGAAATAATTTTAGGGTATTAAGCTCAAATTTCCAGAGTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACTACTACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCTTATTCGCCAGACTACACTTACCCTACGAGCTATTACAATGTGTACGGCGGGGCAACTGCACAGTACCCCATGTACGGGACGGGTCCAGGTGGCATATTGAGCGGAGCGGCGGCAGCAGCAGCGGCATTCTACCCGTATTTCCAATTCGGGGAAGGAAGCGGTGGCAGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTATCCTCATCATCTGTTTCAATACTCGGCCGCGATTAATTCAACTGCTGCAACAACTTTCCCTCAGCATTATGCTGCTCCTCCTATGTCTCTTCCTCCCACGCCCCCCACTTTGCCATCAGGCGTGACCATGGCTCTTCCTGCACCAATTCCACATCGTTAG

Coding sequence (CDS)

ATGACTCCATCTAACTTAGCAAGTCAATTTGGAGATACCACTTATACCAAAGTTTTTGTGGGTGGTTTGGCTTGGGAAACTCACAAAGACACCATGAAGAAATACTTTGAACAATTTGGTGATATCTTGGAAGCCGTCGTTATTACCGACAAAGCCACTGGCCGATCCAAAGGCTATGGATTTGTCACGTTTCGTGAACCCGATGCTGCCGTGAAAGCTTGTGTAGATGCTTCTCCAGTCATCGACGGTCGGAGAGCCAATTGTAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCCACACCTAAACACGAGAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGAAGAAATAATTTTAGGGTATTAAGCTCAAATTTCCAGAGTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACTACTACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCTTATTCGCCAGACTACACTTACCCTACGAGCTATTACAATGTGTACGGCGGGGCAACTGCACAGTACCCCATGTACGGGACGGGTCCAGGTGGCATATTGAGCGGAGCGGCGGCAGCAGCAGCGGCATTCTACCCGTATTTCCAATTCGGGGAAGGAAGCGGTGGCAGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTATCCTCATCATCTGTTTCAATACTCGGCCGCGATTAATTCAACTGCTGCAACAACTTTCCCTCAGCATTATGCTGCTCCTCCTATGTCTCTTCCTCCCACGCCCCCCACTTTGCCATCAGGCGTGACCATGGCTCTTCCTGCACCAATTCCACATCGTTAG

Protein sequence

MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAVKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNNFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR*

Homology

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BLAST of Chy9G158210 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.1e-27
Identity = 100/271 (36.90%), Postives = 136/271 (50.18%), Query Frame = 0


Query: 2   TPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGF 61
           T +N+   FGDT  TKVFVGGLAW+THK+ M  +F ++GDILEAV+I+DK T RSKGYGF
Sbjct: 3   TSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62

Query: 62  VTFREPDAAVKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNN 121
           VTF++  AA +AC D++P+I+GRRANCNLASLG +  K  T    ++        G +N 
Sbjct: 63  VTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQ--------GPKNG 122

Query: 122 FRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQ--QGIPYNLYGYSSYSPDYTYPTSYYN 181
            R    +      GN    ++    T   +  Q  Q +P+  YGY S    Y  P   +N
Sbjct: 123 NRATPPHV-----GNHSQWYYPSGFTNQQHQQQNHQAVPF--YGYPS---AYVAPNMTFN 182

Query: 182 VYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEG--SGGSGSGQQGYGVQYPHHL 241
              G      M G          +     +Y +  +G G    G+ S    +   YP+H 
Sbjct: 183 QKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQ 242

Query: 242 FQYSAAINSTAATTFPQHYAAPPMSLPPTPP 269
            Q         A  FPQ   + P+S   TPP
Sbjct: 243 SQ---------AIGFPQPSFSKPLSF-STPP 245

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BLAST of Chy9G158210 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-24
Identity = 91/242 (37.60%), Postives = 118/242 (48.76%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAV 71
           DTTYTK+FVGGL + T   +++KYFE FG+I EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  KACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNNFRVLSSNFQS 131
           +AC D +P+IDGR+AN NLA LG   +KP                      R++   F  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP----------------------RIMQPGFAF 126

Query: 132 GFGGNVGSAFHSPTTTFPHYAIQQGI--PYNLYGYSSYSPDYTYPTSYYNVYGGATAQYP 191
           G      +    P     HY   Q    P  +  +   +      T Y +  G A AQY 
Sbjct: 127 GVQQLHPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQY- 186

Query: 192 MYGTGPGGILSGAAAAAAAF--YPYFQFGEGSGGSGSGQQGYGVQYPHHLFQYSAAINST 250
                     + AAAAAAA+  YPY      +G   +G  GY VQ P      +AA   T
Sbjct: 187 -------SAAAAAAAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQP-----ITAAAPGT 210

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BLAST of Chy9G158210 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.8e-24
Identity = 91/242 (37.60%), Postives = 117/242 (48.35%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAV 71
           DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  KACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNNFRVLSSNFQS 131
           +AC D +P+IDGR+AN NLA LG   +KP                      R++   F  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP----------------------RIMQPGFAF 126

Query: 132 GFGGNVGSAFHSPTTTFPHYAIQQGI--PYNLYGYSSYSPDYTYPTSYYNVYGGATAQYP 191
           G      +    P     HY   Q    P  +  +   +      T Y +  G A AQY 
Sbjct: 127 GVQQLHPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQY- 186

Query: 192 MYGTGPGGILSGAAAAAAAF--YPYFQFGEGSGGSGSGQQGYGVQYPHHLFQYSAAINST 250
                     + AAAAAAA+  YPY      +G   +G   Y VQ P      +AA   T
Sbjct: 187 -------SAAAAAAAAAAAYDQYPYAASPAAAGYVTTGGYSYAVQQP-----ITAAAPGT 210

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BLAST of Chy9G158210 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.1e-24
Identity = 90/247 (36.44%), Postives = 115/247 (46.56%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAV 71
           DTTYTK+FVGGL + T   +++KYFE FG+I EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 72  KACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNNFRVLSSNFQS 131
           +AC D +P+IDGR+AN NLA LG   +KP                      RV+   F  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP----------------------RVMQPGFTF 126

Query: 132 GFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTS---YYNVYGGATAQY 191
           G      +    P     HY   Q             P  T  T+   Y +  G A AQY
Sbjct: 127 GVPQIHPAFIQRPYGIPTHYVYPQAFMQPSVVIPHIQPTATSATASSPYIDYTGAAYAQY 186

Query: 192 PMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQYSAAINSTA 251
               T        AAAAA   YPY      +G   +   GY +Q P  L   +    + A
Sbjct: 187 ASAAT-------AAAAAAYEQYPYAASPAATGYVAAAGYGYAMQQP--LATAAPGSAAAA 219

Query: 252 ATTFPQH 256
           A  F Q+
Sbjct: 247 AAAFGQY 219

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BLAST of Chy9G158210 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 3.1e-23
Identity = 90/241 (37.34%), Postives = 113/241 (46.89%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAV 71
           DTTYTK+FVGGL + T   +++KYFE FGDI EAVVITD+ TG+S+GYGFVT  +  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72  KACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNNFRVLSSNFQS 131
           +AC D +P+IDGR+AN NLA LG   +KP                      R++   F  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG---AKP----------------------RIMQPGFAF 126

Query: 132 GFGGNVGSAFHSPTTTFPHYAIQQGI--PYNLYGYSSYSPDYTYPTSYYNVYGGATAQYP 191
           G      +    P     HY   Q    P  +  +   +      T Y    G A AQY 
Sbjct: 127 GVQQLHPALIQRPFGIPAHYVYPQAFVQPGVVIPHVQPAAAAASTTPYIGYTGAAYAQY- 186

Query: 192 MYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG-SGSGQQGYGVQYPHHLFQYSAAINSTA 250
                       AAAAA   YPY      + G   +G  GY VQ P      +AA   TA
Sbjct: 187 -----------SAAAAAYEQYPYAASPAAAAGYVAAGGYGYAVQQP-----ITAAAPGTA 205

[Close]

BLAST of Chy9G158210 vs. ExPASy TrEMBL
Match: A0A1S4E2E1 (RNA-binding protein 24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 573.5 bits (1477), Expect = 4.8e-160
Identity = 282/285 (98.95%), Postives = 284/285 (99.65%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAVKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120
           FVTFREPDAA++ACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG GSGQQGYGVQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQY 240

Query: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 286
           SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285

[Close]

BLAST of Chy9G158210 vs. ExPASy TrEMBL
Match: A0A1S4E2E8 (RNA-binding protein 24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 548.9 bits (1413), Expect = 1.3e-152
Identity = 274/285 (96.14%), Postives = 276/285 (96.84%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAVKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120
           FVTFREPDAA++ACVDASPVIDGRRANCNLASLGVQRSKPSTPKH        GGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH--------GGGGGRN 120

Query: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG GSGQQGYGVQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQY 240

Query: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 286
           SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 277

[Close]

BLAST of Chy9G158210 vs. ExPASy TrEMBL
Match: A0A0A0KUN6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G647270 PE=4 SV=1)

HSP 1 Score: 548.1 bits (1411), Expect = 2.1e-152
Identity = 272/279 (97.49%), Postives = 275/279 (98.57%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAVKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120
           FVTFREPDAA++ACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG GSGQQGYGVQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQY 240

Query: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALP 280
           SAAINSTAATTFPQHYAAPPMSLPPTPPTLPS V  A+P
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPS-VFFAIP 278

[Close]

BLAST of Chy9G158210 vs. ExPASy TrEMBL
Match: A0A1S4E2E6 (RNA-binding protein 24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 SV=1)

HSP 1 Score: 548.1 bits (1411), Expect = 2.1e-152
Identity = 272/279 (97.49%), Postives = 275/279 (98.57%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAVKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120
           FVTFREPDAA++ACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG GSGQQGYGVQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQY 240

Query: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALP 280
           SAAINSTAATTFPQHYAAPPMSLPPTPPTLPS V  A+P
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPS-VFFAIP 278

[Close]

BLAST of Chy9G158210 vs. ExPASy TrEMBL
Match: A0A5A7T7A3 (RNA-binding protein 24 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001520 PE=4 SV=1)

HSP 1 Score: 537.7 bits (1384), Expect = 2.9e-149
Identity = 269/285 (94.39%), Postives = 271/285 (95.09%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAVKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120
           FVTFREPDAA++ACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYG             YYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYG-------------YYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG GSGQQGYGVQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQY 240

Query: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 286
           SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 272

[Close]

BLAST of Chy9G158210 vs. NCBI nr
Match: XP_011656046.1 (RNA-binding protein 24 isoform X1 [Cucumis sativus] >XP_016902396.1 PREDICTED: RNA-binding protein 24 isoform X1 [Cucumis melo])

HSP 1 Score: 574 bits (1479), Expect = 1.64e-206
Identity = 282/285 (98.95%), Postives = 284/285 (99.65%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAVKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120
           FVTFREPDAA++ACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG GSGQQGYGVQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQY 240

Query: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285

[Close]

BLAST of Chy9G158210 vs. NCBI nr
Match: XP_016902398.1 (PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo] >XP_031741591.1 RNA-binding protein 24 isoform X3 [Cucumis sativus])

HSP 1 Score: 549 bits (1414), Expect = 9.88e-197
Identity = 274/285 (96.14%), Postives = 276/285 (96.84%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAVKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120
           FVTFREPDAA++ACVDASPVIDGRRANCNLASLGVQRSKPSTPKH        GGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKH--------GGGGGRN 120

Query: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG GSGQQGYGVQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQY 240

Query: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 277

[Close]

BLAST of Chy9G158210 vs. NCBI nr
Match: XP_016902397.1 (PREDICTED: RNA-binding protein 24 isoform X2 [Cucumis melo] >XP_031741590.1 RNA-binding protein 24 isoform X2 [Cucumis sativus] >KGN52604.1 hypothetical protein Csa_009109 [Cucumis sativus])

HSP 1 Score: 548 bits (1413), Expect = 1.57e-196
Identity = 272/279 (97.49%), Postives = 275/279 (98.57%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAVKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120
           FVTFREPDAA++ACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG GSGQQGYGVQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQY 240

Query: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALP 279
           SAAINSTAATTFPQHYAAPPMSLPPTPPTLPS V  A+P
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPS-VFFAIP 278

[Close]

BLAST of Chy9G158210 vs. NCBI nr
Match: XP_038890037.1 (RNA-binding protein 24 isoform X1 [Benincasa hispida])

HSP 1 Score: 544 bits (1401), Expect = 1.47e-194
Identity = 272/290 (93.79%), Postives = 277/290 (95.52%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAVKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120
           FVTFREPDAA++ACVDA+PVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGG  
Sbjct: 61  FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGG 120

Query: 121 -----NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPT 180
                NFRVLSSNFQ+GFGGNVGSAFHSPTT FPHYAI QGIPYNLYGYSSYSPDYTYPT
Sbjct: 121 GVGGRNFRVLSSNFQTGFGGNVGSAFHSPTT-FPHYAIHQGIPYNLYGYSSYSPDYTYPT 180

Query: 181 SYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPH 240
           SYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG GSGQ GYGVQYPH
Sbjct: 181 SYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQHGYGVQYPH 240

Query: 241 HLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           HLFQYS AINS+AATTF QHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 HLFQYSTAINSSAATTFSQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 289

[Close]

BLAST of Chy9G158210 vs. NCBI nr
Match: KAA0039354.1 (RNA-binding protein 24 [Cucumis melo var. makuwa])

HSP 1 Score: 538 bits (1386), Expect = 1.52e-192
Identity = 269/285 (94.39%), Postives = 271/285 (95.09%), Query Frame = 0


Query: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60
           MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFREPDAAVKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120
           FVTFREPDAA++ACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN
Sbjct: 61  FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRN 120

Query: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDYTYPTSYYNV 180
           NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGY             YNV
Sbjct: 121 NFRVLSSNFQSGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGY-------------YNV 180

Query: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQY 240
           YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGG GSGQQGYGVQYPHHLFQY
Sbjct: 181 YGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQY 240

Query: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
           SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR
Sbjct: 241 SAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 272

[Close]

BLAST of Chy9G158210 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-66
Identity = 155/270 (57.41%), Postives = 188/270 (69.63%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAV 71
           DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  KACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNNFRVLSSNFQS 131
           KACVD +PVIDGRRANCNLA+ GVQRSKPS+P H        G  GGR     ++S F++
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH--------GHVGGRG--MKVTSPFKT 122

Query: 132 GFGGNVGSAFHSPTTTFPHYAIQQGIPY-NLYGYSSYSPDYTYPTSYYNVYGGATAQYPM 191
            F G   +A  SP   F HY     +PY N +G+SSYS DY YPTSYYNVYGGATAQ+PM
Sbjct: 123 HF-GTAATAIPSP-LPFSHYT----LPYTNPFGFSSYSMDYNYPTSYYNVYGGATAQHPM 182

Query: 192 YGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYG-VQYPHHLFQYSAAINSTAA 251
           YG+GP  +   AAA AA FYPY QF EG+G       GY  + YP+H+F YSA       
Sbjct: 183 YGSGP--MTGVAAAPAAGFYPYLQFAEGNG----PVTGYAPLHYPNHMFHYSA-----PG 242

Query: 252 TTFPQHYAAPPMSLPPTPPTLPSGVTMALP 280
             +P H+   P+SL P+ P +PS V  A+P
Sbjct: 243 GNYP-HHNGSPVSLAPS-PVIPS-VCFAVP 242

[Close]

BLAST of Chy9G158210 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 246.1 bits (627), Expect = 3.4e-65
Identity = 155/271 (57.20%), Postives = 188/271 (69.37%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAV 71
           DTT+TKVFVGGLAWETHK +++ YFEQFGDI+EAVVITDK++GRSKGYGFVTF +P+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  KACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNNFRVLSSNFQS 131
           KACVD +PVIDGRRANCNLA+ GVQRSKPS+P H        G  GGR     ++S F++
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH--------GHVGGRG--MKVTSPFKT 122

Query: 132 GFGGNVGSAFHSPTTTFPHYAIQQGIPY-NLYGYSSYSPDYTYPT-SYYNVYGGATAQYP 191
            F G   +A  SP   F HY     +PY N +G+SSYS DY YPT SYYNVYGGATAQ+P
Sbjct: 123 HF-GTAATAIPSP-LPFSHYT----LPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHP 182

Query: 192 MYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYG-VQYPHHLFQYSAAINSTA 251
           MYG+GP  +   AAA AA FYPY QF EG+G       GY  + YP+H+F YSA      
Sbjct: 183 MYGSGP--MTGVAAAPAAGFYPYLQFAEGNG----PVTGYAPLHYPNHMFHYSA-----P 242

Query: 252 ATTFPQHYAAPPMSLPPTPPTLPSGVTMALP 280
              +P H+   P+SL P+ P +PS V  A+P
Sbjct: 243 GGNYP-HHNGSPVSLAPS-PVIPS-VCFAVP 243

[Close]

BLAST of Chy9G158210 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 237.7 bits (605), Expect = 1.2e-62
Identity = 144/257 (56.03%), Postives = 167/257 (64.98%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  VKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNNFRVLSSNFQ 130
             ACVDA+PVIDGRRANCNLASLG+QRSKPSTP H        GGGG  NN RV+ S  Q
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH--------GGGGRINNMRVMMSTMQ 127

Query: 131 SGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDY-TYPTSYYNVYGGAT-AQY 190
           +GF    G        TF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY
Sbjct: 128 TGF----GPPPPPQPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 187

Query: 191 PMYG--TGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQYSAAINS 250
            +YG     GG L+ AAA+A  FYP        GG G  Q      + HHL  Y+     
Sbjct: 188 GVYGNRNSGGGGLTAAAASATPFYPC------GGGHGGVQFSQPQPFYHHLSSYN----- 232

Query: 251 TAATTFPQHYAAPPMSL 264
                 P HY+ P  S+
Sbjct: 248 ------PHHYSPPTFSM 232

[Close]

BLAST of Chy9G158210 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 236.9 bits (603), Expect = 2.0e-62
Identity = 148/272 (54.41%), Postives = 172/272 (63.24%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  VKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNNFRVLSSNFQ 130
             ACVDA+PVIDGRRANCNLASLG+QRSKPSTP H        GGGG  NN RV+ S  Q
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH--------GGGGRINNMRVMMSTMQ 127

Query: 131 SGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDY-TYPTSYYNVYGGAT-AQY 190
           +GF    G        TF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY
Sbjct: 128 TGF----GPPPPPQPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 187

Query: 191 PMYG--TGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQYSAAINS 250
            +YG     GG L+ AAA+A  FYP        GG G  Q      + HHL  Y+     
Sbjct: 188 GVYGNRNSGGGGLTAAAASATPFYPC------GGGHGGVQFSQPQPFYHHLSSYN----- 247

Query: 251 TAATTFPQHYAAPPMSL-------PPTPPTLP 272
                 P HY+ P  S+       P  PP +P
Sbjct: 248 ------PHHYSPPTFSMQQGVTGFPLQPPLIP 247

[Close]

BLAST of Chy9G158210 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 233.4 bits (594), Expect = 2.2e-61
Identity = 147/276 (53.26%), Postives = 172/276 (62.32%), Query Frame = 0


Query: 11  GDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAA 70
           GDTTYTKVFVGGLAWETHK+TMKK+FEQFG+ILEAVVITDKA+GRSKGYGFVTFRE +AA
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  VKACVDASPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGRNNFRVLSSNFQ 130
             ACVDA+PVIDGRRANCNLASLG+QRSKPSTP H        GGGG  NN RV+ S  Q
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH--------GGGGRINNMRVMMSTMQ 127

Query: 131 SGFGGNVGSAFHSPTTTFPHYAIQQGIPYNLYGYSSYSPDY-TYPTSYYNVYGGAT-AQY 190
           +GF    G        TF HY     +P NL+GYS YSPDY ++PT+ Y +YG  +  QY
Sbjct: 128 TGF----GPPPPPQPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 187

Query: 191 PMYG--TGPGGILSGAAAAAAAFYPYFQFGEGSGGSGSGQQGYGVQYPHHLFQYSAAINS 250
            +YG     GG L+ AAA+A  FYP        GG G  Q      + HHL  Y+     
Sbjct: 188 GVYGNRNSGGGGLTAAAASATPFYPC------GGGHGGVQFSQPQPFYHHLSSYN----- 247

Query: 251 TAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPI 283
                 P HY+ P  S+        S  T +   P+
Sbjct: 248 ------PHHYSPPTFSMQQGSRNRLSASTTSYSLPL 251

The following BLAST results are available for this feature:

BLAST of Chy9G158210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	2.1e-27	36.90	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9BX46	2.8e-24	37.60	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
D3Z4I3	4.8e-24	37.60	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]
Q76LC6	8.1e-24	36.44	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]
Q5ZMA3	3.1e-23	37.34	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of Chy9G158210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E2E1	4.8e-160	98.95	RNA-binding protein 24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]
A0A1S4E2E8	1.3e-152	96.14	RNA-binding protein 24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]
A0A0A0KUN6	2.1e-152	97.49	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G647270 PE=4 SV...	[more]
A0A1S4E2E6	2.1e-152	97.49	RNA-binding protein 24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498620 PE=4 S...	[more]
A0A5A7T7A3	2.9e-149	94.39	RNA-binding protein 24 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6...	[more]

BLAST of Chy9G158210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656046.1	1.64e-206	98.95	RNA-binding protein 24 isoform X1 [Cucumis sativus] >XP_016902396.1 PREDICTED: R...	[more]
XP_016902398.1	9.88e-197	96.14	PREDICTED: RNA-binding protein 24 isoform X3 [Cucumis melo] >XP_031741591.1 RNA-...	[more]
XP_016902397.1	1.57e-196	97.49	PREDICTED: RNA-binding protein 24 isoform X2 [Cucumis melo] >XP_031741590.1 RNA-...	[more]
XP_038890037.1	1.47e-194	93.79	RNA-binding protein 24 isoform X1 [Benincasa hispida]	[more]
KAA0039354.1	1.52e-192	94.39	RNA-binding protein 24 [Cucumis melo var. makuwa]	[more]

BLAST of Chy9G158210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33470.2	1.4e-66	57.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.1	3.4e-65	57.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	1.2e-62	56.03	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	2.0e-62	54.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	2.2e-61	53.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 4.7E-23 score: 92.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..73 e-value: 7.0E-16 score: 57.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..100 score: 16.500134
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..110 e-value: 1.1E-23 score: 85.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..114
None	No IPR available	PANTHER	PTHR11176:SF16	OS01G0876800 PROTEIN	coord: 1..280
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 1.91794E-40 score: 133.124
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..280
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 15..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G158210.1	Chy9G158210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding