Chy7G132920 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G132920
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	zinc finger BED domain-containing protein RICESLEEPER 1-like
Location	chrH07: 3675044 .. 3675304 (+)
RNA-Seq Expression	Chy7G132920
Synteny	Chy7G132920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTCGCTTTGGCAGTAGCTGCTGTTCTAGATCCAAGGTTCAAAATGAGTTGGTTGAATACTACGATTTGCAGATTTACGGTAGTACAGCCTTGGATCATATCAAGAAAGTTTCTGATGGTATCAAGCAACTTTATGATGCATATTCAATCCGCTTTACAATGGTTGATCAAGGTTCAGCTTTGCGTGGAAGCAGTTTACAGGCAGGCAATGACTCTAGGCACAGGCTGAAAGACGTTGAAAGAGTCCCTTCATGA

mRNA sequence

ATGGAGTCTCGCTTTGGCAGTAGCTGCTGTTCTAGATCCAAGGTTCAAAATGAGTTGGTTGAATACTACGATTTGCAGATTTACGGTAGTACAGCCTTGGATCATATCAAGAAAGTTTCTGATGGTATCAAGCAACTTTATGATGCATATTCAATCCGCTTTACAATGGTTGATCAAGGTTCAGCTTTGCGTGGAAGCAGTTTACAGGCAGGCAATGACTCTAGGCACAGGCTGAAAGACGTTGAAAGAGTCCCTTCATGA

Coding sequence (CDS)

ATGGAGTCTCGCTTTGGCAGTAGCTGCTGTTCTAGATCCAAGGTTCAAAATGAGTTGGTTGAATACTACGATTTGCAGATTTACGGTAGTACAGCCTTGGATCATATCAAGAAAGTTTCTGATGGTATCAAGCAACTTTATGATGCATATTCAATCCGCTTTACAATGGTTGATCAAGGTTCAGCTTTGCGTGGAAGCAGTTTACAGGCAGGCAATGACTCTAGGCACAGGCTGAAAGACGTTGAAAGAGTCCCTTCATGA

Protein sequence

MESRFGSSCCSRSKVQNELVEYYDLQIYGSTALDHIKKVSDGIKQLYDAYSIRFTMVDQGSALRGSSLQAGNDSRHRLKDVERVPS*

Homology

[Close]

BLAST of Chy7G132920 vs. ExPASy TrEMBL
Match: A0A6J1C6S9 (zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008476 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.6e-16
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 18  ELVEYYDLQIYGSTALDHIKKVSDGIKQLYDAYSIRFTMVDQGSALRGSSLQ-AGNDSRH 77
           +LVEYY  QIYGSTALD IK+VSDGIK+LYDAYSI FTMVDQGSAL GSSL    NDSR 
Sbjct: 488 KLVEYYYSQIYGSTALDRIKEVSDGIKELYDAYSICFTMVDQGSALPGSSLPGTSNDSRD 547

Query: 78  RLKDVER 84
           RLK  ++
Sbjct: 548 RLKGFDK 554

[Close]

BLAST of Chy7G132920 vs. ExPASy TrEMBL
Match: A0A6J1C582 (zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008476 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.6e-16
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 18  ELVEYYDLQIYGSTALDHIKKVSDGIKQLYDAYSIRFTMVDQGSALRGSSLQ-AGNDSRH 77
           +LVEYY  QIYGSTALD IK+VSDGIK+LYDAYSI FTMVDQGSAL GSSL    NDSR 
Sbjct: 514 KLVEYYYSQIYGSTALDRIKEVSDGIKELYDAYSICFTMVDQGSALPGSSLPGTSNDSRD 573

Query: 78  RLKDVER 84
           RLK  ++
Sbjct: 574 RLKGFDK 580

[Close]

BLAST of Chy7G132920 vs. ExPASy TrEMBL
Match: A0A2I0JDE2 (zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Punica granatum OX=22663 GN=LOC116213328 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.7e-15
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 18  ELVEYYDLQIYGSTALDHIKKVSDGIKQLYDAYSIRFTMVDQGSALRGSSL-QAGNDSRH 77
           +LVEYY  QIYGSTALDH+K++SDGIK+LYDAYSI  T++DQGSAL G SL    NDSR 
Sbjct: 489 KLVEYYYSQIYGSTALDHVKEISDGIKELYDAYSICSTIIDQGSALPGGSLPDTANDSRD 548

Query: 78  RLKDVER 84
           RLK  ++
Sbjct: 549 RLKGFDK 555

[Close]

BLAST of Chy7G132920 vs. ExPASy TrEMBL
Match: A0A6J1IN11 (zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucurbita maxima OX=3661 GN=LOC111477023 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.9e-15
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 18  ELVEYYDLQIYGSTALDHIKKVSDGIKQLYDAYSIRFTMVDQGSALRGSSLQ-AGNDSRH 77
           +LVEYY  QIYGSTA+D +K+VS GIK+LYDAYSIRFT VDQGSAL GS L    NDSR 
Sbjct: 488 KLVEYYYSQIYGSTAMDRVKEVSSGIKELYDAYSIRFTSVDQGSALPGSGLPGTSNDSRD 547

Query: 78  RLKDVER 84
           RLK  ++
Sbjct: 548 RLKGFDK 554

[Close]

BLAST of Chy7G132920 vs. ExPASy TrEMBL
Match: A0A6J1FC74 (zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111442712 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.9e-15
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 18  ELVEYYDLQIYGSTALDHIKKVSDGIKQLYDAYSIRFTMVDQGSALRGSSLQ-AGNDSRH 77
           +LVEYY  QIYGSTA+D +K+VS GIK+LYDAYSIRFT VDQGSAL GS L    NDSR 
Sbjct: 488 KLVEYYYSQIYGSTAMDRVKEVSSGIKELYDAYSIRFTSVDQGSALPGSGLPGTSNDSRD 547

Query: 78  RLKDVER 84
           RLK  ++
Sbjct: 548 RLKGFDK 554

[Close]

BLAST of Chy7G132920 vs. NCBI nr
Match: XP_022136908.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Momordica charantia] >XP_022136915.1 zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Momordica charantia] >XP_022136922.1 zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 3.72e-20
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 18  ELVEYYDLQIYGSTALDHIKKVSDGIKQLYDAYSIRFTMVDQGSALRGSSLQA-GNDSRH 77
           +LVEYY  QIYGSTALD IK+VSDGIK+LYDAYSI FTMVDQGSAL GSSL    NDSR 
Sbjct: 488 KLVEYYYSQIYGSTALDRIKEVSDGIKELYDAYSICFTMVDQGSALPGSSLPGTSNDSRD 547

Query: 78  RLKDVER 83
           RLK  ++
Sbjct: 548 RLKGFDK 554

[Close]

BLAST of Chy7G132920 vs. NCBI nr
Match: XP_022136900.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 3.73e-20
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 18  ELVEYYDLQIYGSTALDHIKKVSDGIKQLYDAYSIRFTMVDQGSALRGSSLQA-GNDSRH 77
           +LVEYY  QIYGSTALD IK+VSDGIK+LYDAYSI FTMVDQGSAL GSSL    NDSR 
Sbjct: 514 KLVEYYYSQIYGSTALDRIKEVSDGIKELYDAYSICFTMVDQGSALPGSSLPGTSNDSRD 573

Query: 78  RLKDVER 83
           RLK  ++
Sbjct: 574 RLKGFDK 580

[Close]

BLAST of Chy7G132920 vs. NCBI nr
Match: KAF2282747.1 (hypothetical protein GH714_043401 [Hevea brasiliensis])

HSP 1 Score: 89.0 bits (219), Expect = 5.42e-19
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 12  RSKVQNELVEYYDLQIYGSTALDHIKKVSDGIKQLYDAYSIRFTMVDQGSALRGSSLQAG 71
           RS++Q++LVEYY  QIYGSTALD IK+V +G+K+L++AYSI  T+VDQGSAL GSSL + 
Sbjct: 213 RSRIQDKLVEYYYSQIYGSTALDRIKEVFNGLKELFNAYSICSTLVDQGSALPGSSLPSA 272

Query: 72  N-DSRHRLKDVE 82
           N DSR RLK  +
Sbjct: 273 NTDSRDRLKGFD 284

[Close]

BLAST of Chy7G132920 vs. NCBI nr
Match: XP_031404074.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Punica granatum] >PKI54274.1 hypothetical protein CRG98_025334 [Punica granatum])

HSP 1 Score: 90.5 bits (223), Expect = 8.36e-19
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 18  ELVEYYDLQIYGSTALDHIKKVSDGIKQLYDAYSIRFTMVDQGSALRGSSL-QAGNDSRH 77
           +LVEYY  QIYGSTALDH+K++SDGIK+LYDAYSI  T++DQGSAL G SL    NDSR 
Sbjct: 489 KLVEYYYSQIYGSTALDHVKEISDGIKELYDAYSICSTIIDQGSALPGGSLPDTANDSRD 548

Query: 78  RLKDVER 83
           RLK  ++
Sbjct: 549 RLKGFDK 555

[Close]

BLAST of Chy7G132920 vs. NCBI nr
Match: KAG7024652.1 (Zinc finger BED domain-containing protein RICESLEEPER 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 1.14e-18
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 18  ELVEYYDLQIYGSTALDHIKKVSDGIKQLYDAYSIRFTMVDQGSALRGSSLQA-GNDSRH 77
           +LVEYY  QIYGSTA+D +K+VS GIK+LYDAYSIRFT VDQGSAL GS L    NDSR 
Sbjct: 488 KLVEYYYSQIYGSTAMDRVKEVSSGIKELYDAYSIRFTSVDQGSALPGSGLPGTSNDSRD 547

Query: 78  RLKDVER 83
           RLK  ++
Sbjct: 548 RLKGFDK 554

The following BLAST results are available for this feature:

BLAST of Chy7G132920 vs.


Match Name	E-value	Identity	Description

BLAST of Chy7G132920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6S9	2.6e-16	74.63	zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 OS=Momor...	[more]
A0A6J1C582	2.6e-16	74.63	zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 OS=Momor...	[more]
A0A2I0JDE2	3.7e-15	67.16	zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Punica granatum ...	[more]
A0A6J1IN11	4.9e-15	68.66	zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucurbita maxima...	[more]
A0A6J1FC74	4.9e-15	68.66	zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucurbita moscha...	[more]

BLAST of Chy7G132920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136908.1	3.72e-20	74.63	zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X2 [Momordi...	[more]
XP_022136900.1	3.73e-20	74.63	zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Momordi...	[more]
KAF2282747.1	5.42e-19	63.89	hypothetical protein GH714_043401 [Hevea brasiliensis]	[more]
XP_031404074.1	8.36e-19	67.16	zinc finger BED domain-containing protein RICESLEEPER 1-like [Punica granatum] >...	[more]
KAG7024652.1	1.14e-18	68.66	Zinc finger BED domain-containing protein RICESLEEPER 1 [Cucurbita argyrosperma ...	[more]

BLAST of Chy7G132920 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..86
None	No IPR available	PANTHER	PTHR23272:SF13	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE	coord: 18..73
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 18..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G132920.1	Chy7G132920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009791	post-embryonic development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity