Chy6G117890 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G117890
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Arabinogalactan peptide 22
Location	chrH06: 11592322 .. 11593104 (+)
RNA-Seq Expression	Chy6G117890
Synteny	Chy6G117890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTTTTGAGGGCTTCTTGTTTTGGAATCTATGCTGCTGTGCTTATTGCTGTCTTTTGTGTTGTTGCGTTGCCTGTATCTTCAGCTGAACTTTCTTCTTCTTCTCCAGCTCCAGCTCCAACTAGTGATGGTTAGTTCTCTGTTCTTGGTTTTCTATTTTTTCTGTTTGTTTCTCGAGAAATTTTGTGGGAAAAAGATACAAAATCCAGAAAATGGGTTTGAGATTTAATTGGGTTTCCTTGAACTGGAAATAGGGTTTAGGGAATTTGGATGGGATCCTTGTTTGAAAAAGAGACAAAATTTACAACTTTTCCCCCTTTAGAAGCTGCTATTTTTTCTGTTGATTTCTTGAGAAATTTGTTGGGGGGAATGACAGGGGAATATGAGAATGGCTTTGAAATTAAACTCTCATCTTCATATCTATAAAGTTGAATCTCCTTAAATAAAAAATGGCCTCTGCTATTTTGAAGAAAAGAGTTCATTTCAAAGGCAAATTTGAGTTGCTGGAATTAGATGGGAACAGCATAACTAACCTAAAAAAGAAGAATTTTTCTTGGTCTTTCATAGCCAACCACTAAGATTGGAATACAAAATCAACGTTTTTCATCTTTCTGTCTAACCATTTTAGAACTTTTATTTTTTTCTTTAAAGAAAGGTTGCTCAGGTAGAACTCCAAAAATAACAATTGGGATTTGATATGTTGCAGGAACCACAATAGACCAAGGAATAGCATATGTTCTAATGCTGGTGGCTTTAGTGCTAACTTATATCATCCATTGA

mRNA sequence

ATGGGTGTTTTGAGGGCTTCTTGTTTTGGAATCTATGCTGCTGTGCTTATTGCTGTCTTTTGTGTTGTTGCGTTGCCTGTATCTTCAGCTGAACTTTCTTCTTCTTCTCCAGCTCCAGCTCCAACTAGTGATGGAACCACAATAGACCAAGGAATAGCATATGTTCTAATGCTGGTGGCTTTAGTGCTAACTTATATCATCCATTGA

Coding sequence (CDS)

ATGGGTGTTTTGAGGGCTTCTTGTTTTGGAATCTATGCTGCTGTGCTTATTGCTGTCTTTTGTGTTGTTGCGTTGCCTGTATCTTCAGCTGAACTTTCTTCTTCTTCTCCAGCTCCAGCTCCAACTAGTGATGGAACCACAATAGACCAAGGAATAGCATATGTTCTAATGCTGGTGGCTTTAGTGCTAACTTATATCATCCATTGA

Protein sequence

MGVLRASCFGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVALVLTYIIH*

Homology

[Close]

BLAST of Chy6G117890 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.5e-11
Identity = 37/60 (61.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 9  FGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVALVLTYIIH 68
          FG+  + ++++   + LP++ A+  S++PAPAPTSDGTTIDQGIAYVLMLVALVLTY+IH
Sbjct: 8  FGV--STIVSIIFAILLPMAHAQ--SAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Chy6G117890 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.0e-10
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 9  FGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVALVLTYIIH 68
          F +    +  +  V+ LP+  A+  SSSPAPAPTSDGT+IDQGIAYVLM+VAL LTY IH
Sbjct: 6  FPLEILAVFVIISVILLPI--AQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of Chy6G117890 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.2e-09
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 22 VVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVALVLTYIIH 69
          V A+ +S A   S +PAPAPTSDGT+IDQGIAY+LM+VALVLTY+IH
Sbjct: 16 VFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Chy6G117890 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-08
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 13 AAVLIAVFCVVALPVSS-AELSSSSPAPAPTSDGTTIDQGIAYVLMLVALVLTYIIH 69
          +  +IA+F  V   +S  A   S +PAP+PTSDGT+IDQGIAY+LM+VALVLTY+IH
Sbjct: 6  SVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Chy6G117890 vs. ExPASy TrEMBL
Match: A0A5D3BTZ5 (Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00180 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.6e-21
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MGVLRASCFGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVA 60
          M VLRASCFGIYAAVLIAVF V+ALPVSSAEL SSSPAPAPTSDGTTIDQGIAYVLMLVA
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALPVSSAEL-SSSPAPAPTSDGTTIDQGIAYVLMLVA 60

Query: 61 LVLTYIIH 69
          LVLTYIIH
Sbjct: 61 LVLTYIIH 67

[Close]

BLAST of Chy6G117890 vs. ExPASy TrEMBL
Match: A0A5A7U3P4 (Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00750 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.0e-20
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MGVLRASCFGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVA 60
          M VLRASCFGIYAAVLIAVF V+AL VSSAEL SSSPAPAPTSDGTTIDQGIAYVLMLVA
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALSVSSAEL-SSSPAPAPTSDGTTIDQGIAYVLMLVA 60

Query: 61 LVLTYIIH 69
          LVLTYIIH
Sbjct: 61 LVLTYIIH 67

[Close]

BLAST of Chy6G117890 vs. ExPASy TrEMBL
Match: A0A1S3CNS5 (arabinogalactan peptide 22 OS=Cucumis melo OX=3656 GN=LOC103503022 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.0e-20
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MGVLRASCFGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVA 60
          M VLRASCFGIYAAVLIAVF V+AL VSSAEL SSSPAPAPTSDGTTIDQGIAYVLMLVA
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALSVSSAEL-SSSPAPAPTSDGTTIDQGIAYVLMLVA 60

Query: 61 LVLTYIIH 69
          LVLTYIIH
Sbjct: 61 LVLTYIIH 67

[Close]

BLAST of Chy6G117890 vs. ExPASy TrEMBL
Match: A0A0A0L7T5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355060 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-20
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1  MGVLRASCFGIYAAVLIAVFCVVALPVSSAELSSSS--PAPAPTSDGTTIDQGIAYVLML 60
          M VLRASCFGIYAA+LIAVF VVALP+SSA+LSSSS  PAPAPTSDGT IDQGIAYVLML
Sbjct: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60

Query: 61 VALVLTYIIH 69
          VALVLTYIIH
Sbjct: 61 VALVLTYIIH 70

[Close]

BLAST of Chy6G117890 vs. ExPASy TrEMBL
Match: A0A6J1G081 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.5e-14
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MGVLRASCFGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVA 60
          M VLRA CFGIY AV+IA+F VV LPVS AE  +SSPAPAPTSDGT IDQGIAY+LML+A
Sbjct: 1  MAVLRA-CFGIY-AVIIAIFYVVMLPVSRAE-HASSPAPAPTSDGTAIDQGIAYILMLLA 60

Query: 61 LVLTYIIH 69
          L LTYIIH
Sbjct: 61 LALTYIIH 65

[Close]

BLAST of Chy6G117890 vs. NCBI nr
Match: TYK03143.1 (arabinogalactan peptide 22 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 1.08e-29
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MGVLRASCFGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVA 60
          M VLRASCFGIYAAVLIAVF V+ALPVSSAELSSS PAPAPTSDGTTIDQGIAYVLMLVA
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALPVSSAELSSS-PAPAPTSDGTTIDQGIAYVLMLVA 60

Query: 61 LVLTYIIH 68
          LVLTYIIH
Sbjct: 61 LVLTYIIH 67

[Close]

BLAST of Chy6G117890 vs. NCBI nr
Match: XP_008465391.1 (PREDICTED: arabinogalactan peptide 22 [Cucumis melo] >KAA0050462.1 arabinogalactan peptide 22 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 1.79e-28
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MGVLRASCFGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVA 60
          M VLRASCFGIYAAVLIAVF V+AL VSSAELSSS PAPAPTSDGTTIDQGIAYVLMLVA
Sbjct: 1  MAVLRASCFGIYAAVLIAVFYVLALSVSSAELSSS-PAPAPTSDGTTIDQGIAYVLMLVA 60

Query: 61 LVLTYIIH 68
          LVLTYIIH
Sbjct: 61 LVLTYIIH 67

[Close]

BLAST of Chy6G117890 vs. NCBI nr
Match: KGN57863.1 (hypothetical protein Csa_009896 [Cucumis sativus])

HSP 1 Score: 106 bits (265), Expect = 1.95e-28
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1  MGVLRASCFGIYAAVLIAVFCVVALPVSSAELSSSSPAPAP--TSDGTTIDQGIAYVLML 60
          M VLRASCFGIYAA+LIAVF VVALP+SSA+LSSSSPAPAP  TSDGT IDQGIAYVLML
Sbjct: 1  MAVLRASCFGIYAALLIAVFYVVALPLSSAQLSSSSPAPAPAPTSDGTAIDQGIAYVLML 60

Query: 61 VALVLTYIIH 68
          VALVLTYIIH
Sbjct: 61 VALVLTYIIH 70

[Close]

BLAST of Chy6G117890 vs. NCBI nr
Match: XP_038898060.1 (arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalactan protein 41-like [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 3.97e-25
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MGVLRASCFGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVA 60
          M VL+A CFGIYAAV+IAVF VV LPVS+AE SSS PAPAPTSDGTTIDQGIAYVLMLVA
Sbjct: 1  MAVLKA-CFGIYAAVIIAVFYVVTLPVSAAEFSSS-PAPAPTSDGTTIDQGIAYVLMLVA 60

Query: 61 LVLTYIIH 68
          LVLTYIIH
Sbjct: 61 LVLTYIIH 66

[Close]

BLAST of Chy6G117890 vs. NCBI nr
Match: XP_022945187.1 (arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo] >KAG7013292.1 Arabinogalactan peptide 22 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.5 bits (210), Expect = 4.18e-20
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1  MGVLRASCFGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVA 60
          M VLRA CFGIYA V+IA+F VV LPVS AE  +SSPAPAPTSDGT IDQGIAY+LML+A
Sbjct: 1  MAVLRA-CFGIYA-VIIAIFYVVMLPVSRAE-HASSPAPAPTSDGTAIDQGIAYILMLLA 60

Query: 61 LVLTYIIH 68
          L LTYIIH
Sbjct: 61 LALTYIIH 65

[Close]

BLAST of Chy6G117890 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 67.0 bits (162), Expect = 6.7e-12
Identity = 37/60 (61.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 9  FGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVALVLTYIIH 68
          FG+  + ++++   + LP++ A+  S++PAPAPTSDGTTIDQGIAYVLMLVALVLTY+IH
Sbjct: 8  FGV--STIVSIIFAILLPMAHAQ--SAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Chy6G117890 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 63.9 bits (154), Expect = 5.7e-11
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 9  FGIYAAVLIAVFCVVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVALVLTYIIH 68
          F +    +  +  V+ LP+  A+  SSSPAPAPTSDGT+IDQGIAYVLM+VAL LTY IH
Sbjct: 6  FPLEILAVFVIISVILLPI--AQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

[Close]

BLAST of Chy6G117890 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-10
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 22 VVALPVSSAELSSSSPAPAPTSDGTTIDQGIAYVLMLVALVLTYIIH 69
          V A+ +S A   S +PAPAPTSDGT+IDQGIAY+LM+VALVLTY+IH
Sbjct: 16 VFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Chy6G117890 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-09
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 13 AAVLIAVFCVVALPVSS-AELSSSSPAPAPTSDGTTIDQGIAYVLMLVALVLTYIIH 69
          +  +IA+F  V   +S  A   S +PAP+PTSDGT+IDQGIAY+LM+VALVLTY+IH
Sbjct: 6  SVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

The following BLAST results are available for this feature:

BLAST of Chy6G117890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9T8	9.5e-11	61.67	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9FK16	8.0e-10	60.00	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]
O82337	5.2e-09	70.21	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	4.4e-08	59.65	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]

BLAST of Chy6G117890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTZ5	3.6e-21	94.12	Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7U3P4	3.0e-20	92.65	Arabinogalactan peptide 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3CNS5	3.0e-20	92.65	arabinogalactan peptide 22 OS=Cucumis melo OX=3656 GN=LOC103503022 PE=4 SV=1	[more]
A0A0A0L7T5	4.0e-20	88.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355060 PE=4 SV=1	[more]
A0A6J1G081	9.5e-14	77.94	arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE...	[more]

BLAST of Chy6G117890 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03143.1	1.08e-29	94.12	arabinogalactan peptide 22 [Cucumis melo var. makuwa]	[more]
XP_008465391.1	1.79e-28	92.65	PREDICTED: arabinogalactan peptide 22 [Cucumis melo] >KAA0050462.1 arabinogalact...	[more]
KGN57863.1	1.95e-28	88.57	hypothetical protein Csa_009896 [Cucumis sativus]	[more]
XP_038898060.1	3.97e-25	86.76	arabinogalactan protein 41-like [Benincasa hispida] >XP_038898069.1 arabinogalac...	[more]
XP_022945187.1	4.18e-20	77.94	arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogala...	[more]

BLAST of Chy6G117890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24105.1	6.7e-12	61.67	arabinogalactan protein 41	[more]
AT5G53250.1	5.7e-11	60.00	arabinogalactan protein 22	[more]
AT2G46330.1	3.7e-10	70.21	arabinogalactan protein 16	[more]
AT3G61640.1	3.1e-09	59.65	arabinogalactan protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 36..68 e-value: 5.6E-19 score: 67.7
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 1..68
None	No IPR available	PANTHER	PTHR33374:SF38	ARABINOGALACTAN PROTEIN 41	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G117890.1	Chy6G117890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane