Chy5G095150 (gene) Cucumber (hystrix) v1

Overview
NameChy5G095150
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionNascent polypeptide-associated complex subunit alpha, muscle-specific form
LocationchrH05: 5069086 .. 5069955 (-)
RNA-Seq ExpressionChy5G095150
SyntenyChy5G095150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTCCTGTGTTCATTATCTCTTGGTTTTATCATCTTTGTACTTGTCTTGTATGGAACTTTCTTACTGGTTTTTGCAAGGTTTGTTGCCTTCCACGAGATCATTGACCACATGGAGCAGAGCGGTATATAAGGTAAACCTTTTTATATCGTAAACGTACTCCTCTCTCTTTATAAATCTTTTGTTCGGTTGTTCACTTTTCTCATTTCCATTGAGCAGAAAACGTAAGGGTGGGGAGTTCAGGTGATGGTTTCGGTGGCATGTTTGGTTTGCTGTGGAGGTAGTTTGTCACCATCGAGTTTTCTTCCTAGAAGCCTTTGTCCAGTTTGTGTTTGTTTATCATTGTATTTGAAAGCTGTATACTCTCAGAGTCCTACTGTTGGTCGTTGGAGCCTTTTCTTTTCATTTAGTTTCTTTCTTTTCATTTAGTTTCTTTCTTTTCATATCAGTTTGGATGGTAATTTGCATTCACTTTCTGTTTTGAAGGGCAGTGTTTATTATCGTAGTTACAAGAAAGTGAAGAAAATATTGTAATGTTTATGTTATTTTCCAGCTTGTTGGCTACTTTGTTATACGTTATGTTATGTAAGAATGGTTTGTGCACTACTGCAGAAGTGAAATCGTACAAGCTTTGCAACAGATAAATTTTCTGCTTATTGATTTAAATATTGAAAGATTAATACAACCTTTATGAAACAAAAACTTGTTAGAAAGTAAGAATTGGCATACTCGATTAAATTTTCAGTACAGTTTCATGAAATTTATAATTTATGATGATAGAATTTGCCATTCAGAGACATAAGAAACAATCTACCATCTTTGCCTGTCGTACTTGCTATTACGATGACATACACCTTGATGATATGA

mRNA sequence

ATGACCTTCCTGTGTTCATTATCTCTTGGTTTTATCATCTTTGTACTTGTCTTGTATGGAACTTTCTTACTGGTTTTTGCAAGGTTTGTTGCCTTCCACGAGATCATTGACCACATGGAGCAGAGCGAAAACGTAAGGGTGGGGAGTTCAGGTGATGGTTTCGGTGGCATGTTTGGTTTGCTGTGGAGTTTGGATGGTAATTTGCATTCACTTTCTGTTTTGAAGGGCAGTGTTTATTATCGTAGTTACAAGAAAGTGAAGAAAATATTTTTCATGAAATTTATAATTTATGATGATAGAATTTGCCATTCAGAGACATAAGAAACAATCTACCATCTTTGCCTGTCGTACTTGCTATTACGATGACATACACCTTGATGATATGA

Coding sequence (CDS)

ATGACCTTCCTGTGTTCATTATCTCTTGGTTTTATCATCTTTGTACTTGTCTTGTATGGAACTTTCTTACTGGTTTTTGCAAGGTTTGTTGCCTTCCACGAGATCATTGACCACATGGAGCAGAGCGAAAACGTAAGGGTGGGGAGTTCAGGTGATGGTTTCGGTGGCATGTTTGGTTTGCTGTGGAGTTTGGATGGTAATTTGCATTCACTTTCTGTTTTGAAGGGCAGTGTTTATTATCGTAGTTACAAGAAAGTGAAGAAAATATTTTTCATGAAATTTATAATTTATGATGATAGAATTTGCCATTCAGAGACATAAGAAACAATCTACCATCTTTGCCTGTCGTACTTGCTATTACGATGACATACACCTTGATGATATGA

Protein sequence

MTFLCSLSLGFIIFVLVLYGTFLLVFARFVAFHEIIDHMEQSENVRVGSSGDGFGGMFGLLWSLDGNLHSLSVLKGSVYYRSYKKVKKIFFMKFIIYDDRICHSET*ETIYHLCLSYLLLR*HTP**YX
Homology
[Close]
BLAST of Chy5G095150 vs. ExPASy TrEMBL
Match: A0A5A7UUU2 (Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001600 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.0e-08
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 28  RFVAFHEIIDHMEQSENVRVGSSGDGFGGMFGLLW 63
           +FVAFHEIIDHMEQSENVRV SSGDGF  MFGLLW
Sbjct: 238 KFVAFHEIIDHMEQSENVRVESSGDGFSCMFGLLW 272

[Close]
BLAST of Chy5G095150 vs. NCBI nr
Match: KAA0057315.1 (nascent polypeptide-associated complex subunit alpha, muscle-specific form [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.25e-09
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 28  RFVAFHEIIDHMEQSENVRVGSSGDGFGGMFGLLW 62
           +FVAFHEIIDHMEQSENVRV SSGDGF  MFGLLW
Sbjct: 238 KFVAFHEIIDHMEQSENVRVESSGDGFSCMFGLLW 272

The following BLAST results are available for this feature:
BLAST of Chy5G095150 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G095150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UUU25.0e-0888.57Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Cu... [more]
BLAST of Chy5G095150 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0057315.11.25e-0988.57nascent polypeptide-associated complex subunit alpha, muscle-specific form [Cucu... [more]
BLAST of Chy5G095150 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G095150.1Chy5G095150.1mRNA