Chy5G094160 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G094160
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like
Location	chrH05: 3955436 .. 3956134 (+)
RNA-Seq Expression	Chy5G094160
Synteny	Chy5G094160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCAATTGGAACATCCAAGGGAGTTCTGGAGATCGCCAAGTTTGGGATTTATGTTACTATACCTATCGTTCTCATGTACACCTTTGCCAACAATAACAAAAACCTGCAGAGATTCATGGGCAAAGTAACTTTCTATCTCCCGTTCTTCATACAATTATGTTTGTGGATCTGCTCTTAGTTTTATATGGACAGATTATTGACTATTATTTTCTTCTTATTTTTGGGTGGAGGTATCTTGTAACTAAGAGCATCGTTGGCTGTTCAGTTCCCTTTCATTTAGAATTTATAGGTAGCTGTGGGACTTTGCATAAATGACACAATAGGAAATAAATACACGTGGGCCATGTTACAATATTTTCTGGATATAATTAGCTCTAATTTTATTTATTTAATGCTTGTATCTCTAATGGAATAATGCACCTGAGTTGAGGGTTGGATGCAATACTGAACCCTAGAAGTTACTCAAAATGCACGTTGTTCGTGAAGTCAAGATTTATTTGAATTGATCTTCCTTTATCAGGATTCGTTGATGTTCCTTTATCAAGATTTATTTTAATTATCTAAGTTTTCTTATTAATAGATTCTCTTCTGATAGTCTTACATAGTGTATCCTCCCGAGGGACCAAGGCCTCCGTCTCCGGAAGAAGTAAGAGAAATGGCACGCGAATTGGCTCGAAAGAACAACATTCGTTGA

mRNA sequence

ATGTCCTCAATTGGAACATCCAAGGGAGTTCTGGAGATCGCCAAGTTTGGGATTTATGTTACTATACCTATCGTTCTCATGTACACCTTTGCCAACAATAACAAAAACCTGCAGAGATTCATGGGCAAATCTTACATAGTGTATCCTCCCGAGGGACCAAGGCCTCCGTCTCCGGAAGAAGTAAGAGAAATGGCACGCGAATTGGCTCGAAAGAACAACATTCGTTGA

Coding sequence (CDS)

ATGTCCTCAATTGGAACATCCAAGGGAGTTCTGGAGATCGCCAAGTTTGGGATTTATGTTACTATACCTATCGTTCTCATGTACACCTTTGCCAACAATAACAAAAACCTGCAGAGATTCATGGGCAAATCTTACATAGTGTATCCTCCCGAGGGACCAAGGCCTCCGTCTCCGGAAGAAGTAAGAGAAATGGCACGCGAATTGGCTCGAAAGAACAACATTCGTTGA

Protein sequence

MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMGKSYIVYPPEGPRPPSPEEVREMARELARKNNIR*

Homology

[Close]

BLAST of Chy5G094160 vs. ExPASy TrEMBL
Match: A0A0A0LIL9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G205950 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.6e-33
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKG+LEIAKFGIYVTIPIVLMYTFANN+KNLQRFMGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

[Close]

BLAST of Chy5G094160 vs. ExPASy TrEMBL
Match: A0A1S3BLQ1 (uncharacterized protein LOC103491216 OS=Cucumis melo OX=3656 GN=LOC103491216 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-32
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKG+LEIAKFGIYVTIPIVLMYTFANN+KNLQRFMGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNI 75
          VREMARELARKNNI
Sbjct: 61 VREMARELARKNNI 74

[Close]

BLAST of Chy5G094160 vs. ExPASy TrEMBL
Match: A0A6J1L334 (uncharacterized protein LOC111499403 OS=Cucurbita maxima OX=3661 GN=LOC111499403 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.5e-32
Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKG+LEIAKFGIYVTIPI LMYTFANN+KNLQ+F+GKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

[Close]

BLAST of Chy5G094160 vs. ExPASy TrEMBL
Match: A0A6J1CAY1 (uncharacterized protein LOC111009565 OS=Momordica charantia OX=3673 GN=LOC111009565 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 69/75 (92.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKG+LEIAKFG+YV+IPI LMYTFANN+KNLQRF+GKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGLYVSIPIFLMYTFANNSKNLQRFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

[Close]

BLAST of Chy5G094160 vs. ExPASy TrEMBL
Match: A0A6J1H3E4 (uncharacterized protein LOC111460043 OS=Cucurbita moschata OX=3662 GN=LOC111460043 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-31
Identity = 68/75 (90.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKG+LEIAKFGIYVT+PI LMYTFANN+KNLQ+F+GKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTVPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 76
          VREMARELARKNN+R
Sbjct: 61 VREMARELARKNNMR 75

[Close]

BLAST of Chy5G094160 vs. NCBI nr
Match: XP_004150908.1 (uncharacterized protein LOC101207372 [Cucumis sativus] >XP_031737030.1 uncharacterized protein LOC101207372 [Cucumis sativus])

HSP 1 Score: 148 bits (373), Expect = 9.89e-45
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKG+LEIAKFGIYVTIPIVLMYTFANN+KNLQRFMGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 75
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

[Close]

BLAST of Chy5G094160 vs. NCBI nr
Match: XP_038906534.1 (uncharacterized protein LOC120092510 [Benincasa hispida] >XP_038906535.1 uncharacterized protein LOC120092510 [Benincasa hispida] >XP_038906536.1 uncharacterized protein LOC120092510 [Benincasa hispida])

HSP 1 Score: 147 bits (372), Expect = 1.41e-44
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMGKSYIVYPPEGPRPPSPEE 60
          MSS+GTSKG+LEIAKFGIYVTIPIVLMYTFANN+KNLQRFMGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSVGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 75
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

[Close]

BLAST of Chy5G094160 vs. NCBI nr
Match: XP_008449294.1 (PREDICTED: uncharacterized protein LOC103491216 [Cucumis melo] >XP_008449295.1 PREDICTED: uncharacterized protein LOC103491216 [Cucumis melo])

HSP 1 Score: 146 bits (369), Expect = 4.15e-44
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKG+LEIAKFGIYVTIPIVLMYTFANN+KNLQRFMGKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIVLMYTFANNSKNLQRFMGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNI 74
          VREMARELARKNNI
Sbjct: 61 VREMARELARKNNI 74

[Close]

BLAST of Chy5G094160 vs. NCBI nr
Match: XP_023006766.1 (uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023006767.1 uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023006768.1 uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023006769.1 uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023547605.1 uncharacterized protein LOC111806495 [Cucurbita pepo subsp. pepo] >XP_023547606.1 uncharacterized protein LOC111806495 [Cucurbita pepo subsp. pepo] >KAG7013515.1 hypothetical protein SDJN02_23681 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143 bits (361), Expect = 6.71e-43
Identity = 70/75 (93.33%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKG+LEIAKFGIYVTIPI LMYTFANN+KNLQ+F+GKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGIYVTIPIFLMYTFANNSKNLQKFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 75
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

[Close]

BLAST of Chy5G094160 vs. NCBI nr
Match: XP_022138377.1 (uncharacterized protein LOC111009565 [Momordica charantia])

HSP 1 Score: 142 bits (358), Expect = 1.93e-42
Identity = 69/75 (92.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMGKSYIVYPPEGPRPPSPEE 60
          MSSIGTSKG+LEIAKFG+YV+IPI LMYTFANN+KNLQRF+GKSYIVYPPEGPRPPSPEE
Sbjct: 1  MSSIGTSKGILEIAKFGLYVSIPIFLMYTFANNSKNLQRFIGKSYIVYPPEGPRPPSPEE 60

Query: 61 VREMARELARKNNIR 75
          VREMARELARKNNIR
Sbjct: 61 VREMARELARKNNIR 75

[Close]

BLAST of Chy5G094160 vs. TAIR 10
Match: AT4G14615.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52825.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-29
Identity = 58/76 (76.32%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMG-KSYIVYPPEGPRPPSPE 60
          MSS+GTSKGVLEI KFG+YV +PIVLMYTFANN+ N+++FMG +SY+VYP E PRPPSP+
Sbjct: 1  MSSVGTSKGVLEIVKFGVYVAVPIVLMYTFANNSTNIKKFMGNRSYVVYPEEAPRPPSPD 60

Query: 61 EVREMARELARKNNIR 76
          E+REMARELARK NIR
Sbjct: 61 ELREMARELARKKNIR 76

[Close]

BLAST of Chy5G094160 vs. TAIR 10
Match: AT1G52825.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14615.1); Has 52 Blast hits to 49 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 9.0e-26
Identity = 52/72 (72.22%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MSSIGTSKGVLEIAKFGIYVTIPIVLMYTFANNNKNLQRFMGK-SYIVYPPEGPRPPSPE 60
          MSS+GTSKG+LEIAKFG+YV +PIVL+YTFANN+ N+++FMG  SY+VYP E PRPPSPE
Sbjct: 1  MSSVGTSKGILEIAKFGVYVAVPIVLIYTFANNSTNIKKFMGNHSYVVYPKEAPRPPSPE 60

Query: 61 EVREMARELARK 72
          E+REMA++LA K
Sbjct: 61 ELREMAKQLALK 72

The following BLAST results are available for this feature:

BLAST of Chy5G094160 vs.


Match Name	E-value	Identity	Description

BLAST of Chy5G094160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIL9	2.6e-33	97.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G205950 PE=4 SV=1	[more]
A0A1S3BLQ1	1.0e-32	97.30	uncharacterized protein LOC103491216 OS=Cucumis melo OX=3656 GN=LOC103491216 PE=...	[more]
A0A6J1L334	6.5e-32	93.33	uncharacterized protein LOC111499403 OS=Cucurbita maxima OX=3661 GN=LOC111499403...	[more]
A0A6J1CAY1	1.5e-31	92.00	uncharacterized protein LOC111009565 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1H3E4	1.9e-31	90.67	uncharacterized protein LOC111460043 OS=Cucurbita moschata OX=3662 GN=LOC1114600...	[more]

BLAST of Chy5G094160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150908.1	9.89e-45	97.33	uncharacterized protein LOC101207372 [Cucumis sativus] >XP_031737030.1 uncharact...	[more]
XP_038906534.1	1.41e-44	96.00	uncharacterized protein LOC120092510 [Benincasa hispida] >XP_038906535.1 unchara...	[more]
XP_008449294.1	4.15e-44	97.30	PREDICTED: uncharacterized protein LOC103491216 [Cucumis melo] >XP_008449295.1 P...	[more]
XP_023006766.1	6.71e-43	93.33	uncharacterized protein LOC111499403 [Cucurbita maxima] >XP_023006767.1 uncharac...	[more]
XP_022138377.1	1.93e-42	92.00	uncharacterized protein LOC111009565 [Momordica charantia]	[more]

BLAST of Chy5G094160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14615.1	3.9e-29	76.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G52825.1	9.0e-26	72.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018625	Protein Pet100	PFAM	PF09803	Pet100	coord: 10..72 e-value: 5.9E-10 score: 39.5
None	No IPR available	PANTHER	PTHR35700	OS07G0181800 PROTEIN	coord: 1..73
None	No IPR available	PANTHER	PTHR35700:SF2	PROTEIN, PUTATIVE-RELATED	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G094160.1	Chy5G094160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion