Chy4G086810 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G086810
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	TRASH domain-containing protein
Location	chrH04: 25549508 .. 25549915 (-)
RNA-Seq Expression	Chy4G086810
Synteny	Chy4G086810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGGATGTGACAGGGGTAAACATGAAAGTTTATAATCCAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCTGAAGAGCCATTGAAGGCTATAAAGAAGATTGATATATAAAGTCATAGCGGTTAGGGAATCATGACACATTTCACGGAGGTTTTAAATTTCTTCCATTCCCATTTGTTTTTATATACCTATATATTTTGTGAATACTACTTCAGGTGTAACTCGGTACGTTAAATTTGCAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCAGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCGATCACAAGAAGAGCAAAGTCAGCCCTATGGAAGAATGA

mRNA sequence

ATGGAAAAGGATGTGACAGGGGTAAACATGAAATTTGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCTGAAGAGCCATTGAAGGCTATAAAGAAGATTGATATATAAAGTCATAGCGGTTAGGGAATCATGACACATTTCACGGAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCAGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCGATCACAAGAAGAGCAAAGTCAGCCCTATGGAAGAATGA

Coding sequence (CDS)

ATGGAAAAGGATGTGACAGGGGTAAACATGAAATTTGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCTGAAGAGCCATTGAAGGCTATAAAGAAGATTGATATATAAAGTCATAGCGGTTAGGGAATCATGACACATTTCACGGAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCAGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCGATCACAAGAAGAGCAAAGTCAGCCCTATGGAAGAATGA

Protein sequence

MEKDVTGVNMKFERKRNRPERYDRNFAEEPLKAIKKIDI*SHSG*GIMTHFTENAWKESKGA*RGSEGGSFPHPSKDQSQGGTDHKKSKVSPMEE*

Homology

[Close]

BLAST of Chy4G086810 vs. ExPASy Swiss-Prot
Match: O22165 (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.8e-04
Identity = 24/37 (64.86%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 1  MEKDVTGVNMKFERKRNRPERYDRNFAEEPLKAIKKI 38
          M KD T    +FE+KRNRPERYDRN  E  L AIKKI
Sbjct: 63 MTKDTT---FEFEKKRNRPERYDRNVTENTLMAIKKI 96

[Close]

BLAST of Chy4G086810 vs. ExPASy TrEMBL
Match: A0A0A0LDW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G750900 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-26
Identity = 70/96 (72.92%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1   MEKDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKIDI*SHSG*GIMTHFTENAWKES 60
           MEKDVT     +FERKRNRPERYDRNFAEEPLKAIKKID             T +AWKES
Sbjct: 34  MEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKID-----------KDTADAWKES 93

Query: 61  KGA*RGSEGGSFPHPSKDQSQGGTDHKKSKVSPMEE 96
           KGA RGSEGGSFPHPSKDQSQGGT+ K+SK+SPMEE
Sbjct: 94  KGARRGSEGGSFPHPSKDQSQGGTNQKQSKISPMEE 118

[Close]

BLAST of Chy4G086810 vs. ExPASy TrEMBL
Match: A0A5A7TR87 (Putative ribosome biogenesis protein RLP24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003520 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 11 KFERKRNRPERYDRNFAEEPLKAIKKID 39
          +FERKRNRPERYDRNFAEEPLKAIKKID
Sbjct: 10 EFERKRNRPERYDRNFAEEPLKAIKKID 37

[Close]

BLAST of Chy4G086810 vs. ExPASy TrEMBL
Match: A0A6A2XUQ6 (Putative ribosome bioproteinsis protein RLP24 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112124pilonHSYRG00029 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.3e-04
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 3  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID 39
          KD+T     +FERKRNRPERYDRN AE  LKAIKKID
Sbjct: 61 KDMTQDATFEFERKRNRPERYDRNLAENTLKAIKKID 97

[Close]

BLAST of Chy4G086810 vs. ExPASy TrEMBL
Match: A0A7G7YBB0 (Putative 60S ribosomal protein L24 OS=Populus ussuriensis OX=696360 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.3e-04
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 3  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID 39
          KD+T     +FERKRNRPERYDRN AE  LKAIKKID
Sbjct: 61 KDMTQDTTFEFERKRNRPERYDRNLAENTLKAIKKID 97

[Close]

BLAST of Chy4G086810 vs. ExPASy TrEMBL
Match: A0A067KE36 (TRASH domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11260 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.3e-04
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 3  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID 39
          KD+T     +FERKRNRPERYDRN AE  LKAIKKID
Sbjct: 61 KDMTQDATFEFERKRNRPERYDRNLAENTLKAIKKID 97

[Close]

BLAST of Chy4G086810 vs. NCBI nr
Match: KAE8651076.1 (hypothetical protein Csa_002111 [Cucumis sativus])

HSP 1 Score: 128 bits (322), Expect = 1.41e-35
Identity = 70/96 (72.92%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1   MEKDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKIDI*SHSG*GIMTHFTENAWKES 60
           MEKDVT     +FERKRNRPERYDRNFAEEPLKAIKKID             T +AWKES
Sbjct: 70  MEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKID-----------KDTADAWKES 129

Query: 61  KGA*RGSEGGSFPHPSKDQSQGGTDHKKSKVSPMEE 95
           KGA RGSEGGSFPHPSKDQSQGGT+ K+SK+SPMEE
Sbjct: 130 KGARRGSEGGSFPHPSKDQSQGGTNQKQSKISPMEE 154

[Close]

BLAST of Chy4G086810 vs. NCBI nr
Match: KAA0043915.1 (putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa] >TYK25222.1 putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 3.51e-09
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 12 FERKRNRPERYDRNFAEEPLKAIKKID 38
          FERKRNRPERYDRNFAEEPLKAIKKID
Sbjct: 11 FERKRNRPERYDRNFAEEPLKAIKKID 37

[Close]

BLAST of Chy4G086810 vs. NCBI nr
Match: CAA2994624.1 (probable ribosome biogenesis RLP24 [Olea europaea subsp. europaea])

HSP 1 Score: 54.7 bits (130), Expect = 1.24e-06
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 3  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID 38
          KD+T     +FERKRNRPERYDRN AEE LKAIKKID
Sbjct: 60 KDMTQDSTFEFERKRNRPERYDRNVAEETLKAIKKID 96

[Close]

BLAST of Chy4G086810 vs. NCBI nr
Match: XP_022858257.1 (probable ribosome biogenesis protein RLP24 [Olea europaea var. sylvestris] >CAA2994623.1 probable ribosome biogenesis RLP24 [Olea europaea subsp. europaea])

HSP 1 Score: 54.7 bits (130), Expect = 1.26e-06
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 3  KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID 38
          KD+T     +FERKRNRPERYDRN AEE LKAIKKID
Sbjct: 61 KDMTQDSTFEFERKRNRPERYDRNVAEETLKAIKKID 97

[Close]

BLAST of Chy4G086810 vs. NCBI nr
Match: XP_020576413.1 (LOW QUALITY PROTEIN: probable ribosome biogenesis protein RLP24 [Phalaenopsis equestris])

HSP 1 Score: 54.7 bits (130), Expect = 1.42e-06
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 3   KDVT-GVNMKFERKRNRPERYDRNFAEEPLKAIKKID 38
           KD+T     +FERKRNRPERYDRN AEE LKAIKKID
Sbjct: 65  KDMTQDSTFEFERKRNRPERYDRNVAEETLKAIKKID 101

[Close]

BLAST of Chy4G086810 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 24/37 (64.86%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 1  MEKDVTGVNMKFERKRNRPERYDRNFAEEPLKAIKKI 38
          M KD T    +FE+KRNRPERYDRN  E  L AIKKI
Sbjct: 63 MTKDTT---FEFEKKRNRPERYDRNVTENTLMAIKKI 96

[Close]

BLAST of Chy4G086810 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 24/37 (64.86%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 1  MEKDVTGVNMKFERKRNRPERYDRNFAEEPLKAIKKI 38
          M KD T    +FE+KRNRPERYDRN  E  L AIKKI
Sbjct: 63 MTKDTT---FEFEKKRNRPERYDRNVTENTLMAIKKI 96

The following BLAST results are available for this feature:

BLAST of Chy4G086810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22165	1.8e-04	64.86	Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]

BLAST of Chy4G086810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDW1	1.0e-26	72.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G750900 PE=3 SV=1	[more]
A0A5A7TR87	1.3e-05	96.43	Putative ribosome biogenesis protein RLP24 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6A2XUQ6	4.3e-04	72.97	Putative ribosome bioproteinsis protein RLP24 OS=Hibiscus syriacus OX=106335 GN=...	[more]
A0A7G7YBB0	4.3e-04	72.97	Putative 60S ribosomal protein L24 OS=Populus ussuriensis OX=696360 PE=2 SV=1	[more]
A0A067KE36	4.3e-04	72.97	TRASH domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11260 PE=3 ...	[more]

BLAST of Chy4G086810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651076.1	1.41e-35	72.92	hypothetical protein Csa_002111 [Cucumis sativus]	[more]
KAA0043915.1	3.51e-09	100.00	putative ribosome biogenesis protein RLP24 [Cucumis melo var. makuwa] >TYK25222....	[more]
CAA2994624.1	1.24e-06	75.68	probable ribosome biogenesis RLP24 [Olea europaea subsp. europaea]	[more]
XP_022858257.1	1.26e-06	75.68	probable ribosome biogenesis protein RLP24 [Olea europaea var. sylvestris] >CAA2...	[more]
XP_020576413.1	1.42e-06	75.68	LOW QUALITY PROTEIN: probable ribosome biogenesis protein RLP24 [Phalaenopsis eq...	[more]

BLAST of Chy4G086810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44860.1	1.3e-05	64.86	Ribosomal protein L24e family protein	[more]
AT2G44860.2	1.3e-05	64.86	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G086810.1	Chy4G086810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005730	nucleolus