Chy4G086290 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G086290
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	40S ribosomal protein S14
Location	chrH04: 25116811 .. 25118251 (-)
RNA-Seq Expression	Chy4G086290
Synteny	Chy4G086290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTTCATCATTCTTTTCCATTTAATTTTTCTATATTCTGTTCATGGAAATCATAGTTGCAATCCGATTATAATTGTTACATTCAATTATAATGTTGGAAATCTTATGGAAAATTTTGTCATTAGCAATCGATTCAAGATAGGAAAGGAGAATGGAAATTTTTATACCTCTGTTTGTTTTTTTTTTGTAACAAAGTCGATGCGTTGAATCTGTCTGCATTTGAATCGTTGTTCCTTCATGGTTGCCTTCTAAACGCAAAATTGGAAGTTTACGACATTTGTAATGTGTATTCTATAGTCGAGAAGGAAGACTAGAGAGCCTAAGGAGGAAACTGTCACTCTTGGCCCTGCTGTTCGTGAAGGAGAGCATGTCTTTGGTGTTGCTCACATTTTTGCTTCGTTTAATGACACTTTCATTGTGAGTGATCTTCGTTAGATTCTCCATTTAAGAACTCATATGATTTTTTTGTGTAATTGACTGATTGTTCTATGGTTGGATCGCAGCATGTGACCGATCTGTCTGGTCGGGAAACACTTGTTCGCATCACTGGTATGTAATCTCTTCCGCTCACTGTTTAAATTGATTCTGGCGTGGCTAATGGTCTACTTTTTGAGTGATTTGATTCTACTGGTTGATAATTTCCTTGTATTTTGTAGTTCATTCTCATTGTGATTTAGTATTCTGTCTTTTGAATTGTTGGACTGAATGATTTATCTTGTCTTTGTTCAGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCATCGCCTTATGCTGCCATGCTTGCTGCACAAGACGTTTCTCAAAGATGCAAGGTTTGGTCCATAATCAGCTTTATGTTTCTCTTCATTTGAGTGTACTTAATCTAAATGTGAGAATCGCCATGTAAGTGCCAAGAGGTGTGCATTTGTATTGAATCACTTGGTAATGTCTGACAGGAACTTGGCATCACTGCCTTACATATAAAGCTTCGGGCTACTGGTGGAAATAAAACCAAGACTCCTGGACCTGGTGCTCAGTCAGCTCTTAGAGCCCTTGCACGTTCGGGCATGAGGATCGGTCGTATAGGTACATATTCACCTATATTCTTGCTTTCAATATTTACAAGAATTGCTAGATTTTCAGTAAGAAACCAGAGCTTCTCCAGTTGTCTTTGTGCAGAGAGTTGTGGTATCGACTTATAAATGTTCTGCCCGTATTCATTGTAAATAAAAATGACATTAGGCCATTCTTAATGCATGTTTGGGAGCGAATTTCATTCTACCAAAATTGGATCTAAACGATTTAGAAAATGACAAGTGATTAAACCATTTCGGTGGGATTTTCAAGGTCTAATTGTTTCATTAACCTAATTTGTTGGTCTTCTCAGAGGATGTAACTCCGATACCTACCGACAGCACACGAAGAAAGGGTGGAAGGAGAGGAAGAAGACTGTGA

mRNA sequence

ATGTCGAGAAGGAAGACTAGAGAGCCTAAGGAGGAAACTGTCACTCTTGGCCCTGCTGTTCGTGAAGGAGAGCATGTCTTTGGTGTTGCTCACATTTTTGCTTCGTTTAATGACACTTTCATTCATGTGACCGATCTGTCTGGTCGGGAAACACTTGTTCGCATCACTGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCATCGCCTTATGCTGCCATGCTTGCTGCACAAGACGTTTCTCAAAGATGCAAGGAACTTGGCATCACTGCCTTACATATAAAGCTTCGGGCTACTGGTGGAAATAAAACCAAGACTCCTGGACCTGGTGCTCAGTCAGCTCTTAGAGCCCTTGCACGTTCGGGCATGAGGATCGGTCGTATAGAGGATGTAACTCCGATACCTACCGACAGCACACGAAGAAAGGGTGGAAGGAGAGGAAGAAGACTGTGA

Coding sequence (CDS)

ATGTCGAGAAGGAAGACTAGAGAGCCTAAGGAGGAAACTGTCACTCTTGGCCCTGCTGTTCGTGAAGGAGAGCATGTCTTTGGTGTTGCTCACATTTTTGCTTCGTTTAATGACACTTTCATTCATGTGACCGATCTGTCTGGTCGGGAAACACTTGTTCGCATCACTGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCATCGCCTTATGCTGCCATGCTTGCTGCACAAGACGTTTCTCAAAGATGCAAGGAACTTGGCATCACTGCCTTACATATAAAGCTTCGGGCTACTGGTGGAAATAAAACCAAGACTCCTGGACCTGGTGCTCAGTCAGCTCTTAGAGCCCTTGCACGTTCGGGCATGAGGATCGGTCGTATAGAGGATGTAACTCCGATACCTACCGACAGCACACGAAGAAAGGGTGGAAGGAGAGGAAGAAGACTGTGA

Protein sequence

MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL*

Homology

[Close]

BLAST of Chy4G086290 vs. ExPASy Swiss-Prot
Match: Q9CAX6 (40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.0e-75
Identity = 140/150 (93.33%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK ETVTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. ExPASy Swiss-Prot
Match: P42036 (40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2)

HSP 1 Score: 280.0 bits (715), Expect = 1.6e-74
Identity = 139/150 (92.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK E VTLGPAVREGE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. ExPASy Swiss-Prot
Match: P19950 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.7e-74
Identity = 143/150 (95.33%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEE V LGP VREGE VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           SGM+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 149

[Close]

BLAST of Chy4G086290 vs. ExPASy Swiss-Prot
Match: P19951 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.5e-74
Identity = 141/148 (95.27%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 3   RRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 62
           R+KTREPKEE V LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK
Sbjct: 4   RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 63

Query: 63  ADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 122
           ADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG
Sbjct: 64  ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 123

Query: 123 MRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           M+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 124 MKIGRIEDVTPVPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. ExPASy Swiss-Prot
Match: Q9SIH0 (40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 5.9e-74
Identity = 138/150 (92.00%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK + VTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. ExPASy TrEMBL
Match: A0A6J1J4Y9 (40S ribosomal protein S14-2 OS=Cucurbita maxima OX=3661 GN=LOC111481789 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. ExPASy TrEMBL
Match: A0A0A0LGP6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777590 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. ExPASy TrEMBL
Match: A0A1S3B682 (40S ribosomal protein S14-2 OS=Cucumis melo OX=3656 GN=LOC103486630 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. ExPASy TrEMBL
Match: A0A6J1F6L2 (40S ribosomal protein S14-2 OS=Cucurbita moschata OX=3662 GN=LOC111441344 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. ExPASy TrEMBL
Match: A0A5D3DNR5 (40S ribosomal protein S14-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004100 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.3e-76
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. NCBI nr
Match: XP_004149195.1 (40S ribosomal protein S14-2 [Cucumis sativus] >XP_004149197.1 40S ribosomal protein S14-2 [Cucumis sativus] >XP_008442863.1 PREDICTED: 40S ribosomal protein S14-2 [Cucumis melo] >XP_008442864.1 PREDICTED: 40S ribosomal protein S14-2 [Cucumis melo] >XP_022144796.1 40S ribosomal protein S14-2 [Momordica charantia] >XP_022934060.1 40S ribosomal protein S14-2 [Cucurbita moschata] >XP_022934073.1 40S ribosomal protein S14-2 [Cucurbita moschata] >XP_022983150.1 40S ribosomal protein S14-2 [Cucurbita maxima] >XP_022983152.1 40S ribosomal protein S14-2 [Cucurbita maxima] >XP_023526342.1 40S ribosomal protein S14-2 [Cucurbita pepo subsp. pepo] >XP_023526400.1 40S ribosomal protein S14-2 [Cucurbita pepo subsp. pepo] >XP_038903581.1 40S ribosomal protein S14-2 [Benincasa hispida] >KAA0043860.1 40S ribosomal protein S14-2-like [Cucumis melo var. makuwa] >KAG6580714.1 40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. sororia] >KGN59151.1 hypothetical protein Csa_001943 [Cucumis sativus] >KGN59153.1 hypothetical protein Csa_001079 [Cucumis sativus] >TYK25276.1 40S ribosomal protein S14-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 294 bits (753), Expect = 2.61e-100
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. NCBI nr
Match: XP_022946789.1 (40S ribosomal protein S14-2-like [Cucurbita moschata] >XP_023005923.1 40S ribosomal protein S14-2-like [Cucurbita maxima] >XP_023538913.1 40S ribosomal protein S14-2-like [Cucurbita pepo subsp. pepo] >KAG6596583.1 40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 294 bits (752), Expect = 3.71e-100
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           SGMR+GRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRVGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. NCBI nr
Match: XP_038903512.1 (40S ribosomal protein S14-2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 293 bits (750), Expect = 7.48e-100
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           SGMRIGR+EDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRMEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. NCBI nr
Match: KAG7017469.1 (40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294 bits (753), Expect = 1.15e-99
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 44  MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 103

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 104 VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 163

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 164 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 193

[Close]

BLAST of Chy4G086290 vs. NCBI nr
Match: KAG7017470.1 (40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292 bits (748), Expect = 1.46e-99
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 2   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 1   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 60

Query: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 61  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 120

Query: 122 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150
           GMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 GMRIGRIEDVTPIPTDSTRRKGGRRGRRL 149

[Close]

BLAST of Chy4G086290 vs. TAIR 10
Match: AT3G11510.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 281.2 bits (718), Expect = 5.0e-76
Identity = 140/150 (93.33%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK ETVTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. TAIR 10
Match: AT3G52580.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-75
Identity = 139/150 (92.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK E VTLGPAVREGE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. TAIR 10
Match: AT2G36160.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 278.1 bits (710), Expect = 4.2e-75
Identity = 138/150 (92.00%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK + VTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Chy4G086290 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-10
Identity = 46/145 (31.72%), Postives = 69/145 (47.59%), Query Frame = 0


Query: 2   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61
           SR+ TR    + V   P         GV H+ ASFN+T + VTD+ GR       G    
Sbjct: 10  SRKNTRSGSRKNVRRIPK--------GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGF 69

Query: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121
           +  R   +P+AA  AA +  +   + G+    +++        K PG G  +ALRA+ RS
Sbjct: 70  RGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVRI--------KGPGLGRDAALRAIRRS 129

Query: 122 GMRIGRIEDVTPIPTDSTRRKGGRR 147
           G+ +  + DVTP+P +  R    RR
Sbjct: 130 GILLSFVRDVTPMPHNGCRPPKKRR 137

The following BLAST results are available for this feature:

BLAST of Chy4G086290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAX6	7.0e-75	93.33	40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1	[more]
P42036	1.6e-74	92.67	40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2	[more]
P19950	2.7e-74	95.33	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]
P19951	4.5e-74	95.27	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]
Q9SIH0	5.9e-74	92.00	40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1	[more]

BLAST of Chy4G086290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J4Y9	1.3e-76	100.00	40S ribosomal protein S14-2 OS=Cucurbita maxima OX=3661 GN=LOC111481789 PE=3 SV=...	[more]
A0A0A0LGP6	1.3e-76	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777590 PE=3 SV=1	[more]
A0A1S3B682	1.3e-76	100.00	40S ribosomal protein S14-2 OS=Cucumis melo OX=3656 GN=LOC103486630 PE=3 SV=1	[more]
A0A6J1F6L2	1.3e-76	100.00	40S ribosomal protein S14-2 OS=Cucurbita moschata OX=3662 GN=LOC111441344 PE=3 S...	[more]
A0A5D3DNR5	1.3e-76	100.00	40S ribosomal protein S14-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of Chy4G086290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149195.1	2.61e-100	100.00	40S ribosomal protein S14-2 [Cucumis sativus] >XP_004149197.1 40S ribosomal prot...	[more]
XP_022946789.1	3.71e-100	99.33	40S ribosomal protein S14-2-like [Cucurbita moschata] >XP_023005923.1 40S riboso...	[more]
XP_038903512.1	7.48e-100	99.33	40S ribosomal protein S14-2-like isoform X2 [Benincasa hispida]	[more]
KAG7017469.1	1.15e-99	100.00	40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG7017470.1	1.46e-99	100.00	40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]

BLAST of Chy4G086290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11510.1	5.0e-76	93.33	Ribosomal protein S11 family protein	[more]
AT3G52580.1	1.1e-75	92.67	Ribosomal protein S11 family protein	[more]
AT2G36160.1	4.2e-75	92.00	Ribosomal protein S11 family protein	[more]
ATCG00750.1	1.2e-10	31.72	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 28..146 e-value: 1.0E-47 score: 161.0
IPR001971	Ribosomal protein S11	PIRSF	PIRSF002131	RPS11p_RPS11a_RPS14e_RPS11o	coord: 1..147 e-value: 2.7E-37 score: 125.6
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 2..150
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 3..147 score: 20.885508
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 1..150 e-value: 8.5E-71 score: 238.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..150
None	No IPR available	PANTHER	PTHR11759:SF37	BNAA05G27530D PROTEIN	coord: 2..150
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 23..148
IPR018102	Ribosomal S11, conserved site	PROSITE	PS00054	RIBOSOMAL_S11	coord: 115..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G086290.1	Chy4G086290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0048027	mRNA 5'-UTR binding
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome