Chy3G059120 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G059120
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	S4 RNA-binding domain-containing protein
Location	chrH03: 12837281 .. 12843266 (-)
RNA-Seq Expression	Chy3G059120
Synteny	Chy3G059120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCATTAGCATCTTCTTCAGTCTCACTTCTCTCAAAACCTTCGTTACTCTTCAACCCCATTCGCGCCATTCGTCGCATTTCATGTTCACTTTCATCCAATTCCACTCCCAACGCCTCCTCTTCATCTTCATCTTCACTGGAGTTCAACATCACATTCGCTCCCCCGAAACCCAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAAATACCGGCGGTCAGCTCTTCATTCCGTGGATAGTTCGCGGCGAAGATGGGAACCTCAAGCTCCAGTCTCATCCTCCTACACGGTTCCTTCATTCCTTGTCGGAGGATGAAACCAAGCCCAAGAAGAAGAAGGTTTCTTCTGGTAAACCCATAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGGTTTTATAATGAGAACATTAGGGAGTCGTCGCAGCGTCTCAGTAAAGTTCTTGCTGCTACTGGAGGTCGGTGCTTCTCTAACCAAAATGTTAATTCTGTTACTCTGCATTCCTTTCTGTGTTATGTGCTCTTTACTTGTTGGTGTTTGGTTCTTGGCGTGGTGGCTAGAAGTCCTGTTATTTTCGGAAACTATTTAGTTATGTCGATAACAGGTTTTGGCAATAGGATGGAAGCAATAAGTATCAATTTCTAGTTTAGTTAGTAGAATTTGTAAGTATAGTTGCAAATCGGTACTAATTTTGATTTACTTCGCATGAACTTCAAGTTATTTATTTCACGTGGATAGAAATAGAGAGATTGAACAAACTGAGCGGTTTCTACACTAGTGTTATGCGATATACTAGCTTAAACATGGTCTCCACCAACAACACTATACTCCAAGAAAAAAGAATCAAAACAGCACAACGGACCCAGATTAACGAAGGCTCTAATCAATTGAGTAGAGGAAAATTTAATAGGAGCTTAAGCTCCTGTTGGAATGAAACTTATGTGACTCTTTCCTTAGGGCCGGATCCTTACAATTCGTTCCATTGCATTCTTTCATGAGTGGATATATTTTTTCAAGTCTTAACCAACTTGAAGGAGGGTCATATTTTTTTTAGAAACATTTTCTTTCATTGAGAAAGAAAGAATGAATATAAGACATTAAAAAGAACCAAGCCCACAAAAACTCTACTAAAGAAAAAGTTTCCAACTAGGTAAAGTAGTGTGAGAGTAAGGGACATGATTATTCGGATGACCACTAATTAATCTATAATATATATCTTATTCAAATTGTATCTTAATCTTTTTCACAAGTACTTTTTTCAATGAAAATTTTTCACTTTTTATTTATAACGTTGTTGACATTTGGTTTATTCTCCACAAAGTTGAATTCGTTGGATATTGTGAACGAGGTATTGCTTTTGCAAGAAACTTAGGTACTAGAGTGAGTAAATTTGTCATCATATGAATTTGTTGGGCTTAGACTCTCTTGTGTGTACAAGGTTTGGTATTTTCTGATTTTTGGTGATATTATTCATATGACAGGTCTTCCATCTCGAACCTTCTATTATTCTGGTTCTTGCAACATCTACTTATTTGTGGCCTTATTTTTTTCTCACCGTCTATGAATACTTTTTGATTTTGCATGTTTGGTAGTCTGATCTGTTATTTGCTATTGGTTAGGTTTAAGGGAAATTCTTCTCTTTGAGTTCCATTCTCATTGTAAAACCACAAATGGCCGACTATGTAAATTGACACGTACTGTCAAAATGCGGTTGGCAAGTCATGGTAATAAGATCAATTGTTTATAAACTTAAATGTTGGAACATGTTGGATAATGCGTTTGGTAAAGCCATGGTGTACTCTCTCAAAGCTCTTCGGCAATTACAGCATCGAAGATCTAAATTTAAATTGAATTGCTTTTATTTTTCAGCTTGATAATGGATCTTTTGTCTTTATTGTACTGCTTTTGTATTCTCCTTCTTCTCCGTTACTATTACTTTGTATTAGATCTTTTAATAGTCATGACCTAGTGAAGATTTCCGTTTTGAAAGTTAGTTCCGGATATATGAGGGTGCTACGGGGTGTCAACCTAGTTGAGATGTTTGGTTGCACTTGGTTGATCCTCTATAAAAAGCTATTGTATAATCCTCTTGCACTATAAGTTTTAGTATCATTTTCTCTTTTTAATAAAGAGACTTGTTTCTGTTAAAAAAAAGAAACATTTGGCCCGAGAGAAAGGAAGAGGTAGAGATATCTTGTGGAGGTCTGGACTACAACCTGGTTAATATTTGCTCCCCTTTTGGTATTAATTTTCAAAGTTCTATCTATCCTCTATCCATTCTCCCCAACCACTGGATCCTTTTTTACAGTGGTAGGCACTTAAGTTGGAATATTTCTGTAGAATACCTTGTTGTTTCTAGCTAGCCTCAACCCCTGTTAGGATGAGGGCTGCGGATGAAAATTTAGTTGTATACAATTTGGTCGAGCTTGTAAGGATAAATTATAATATATTTTTTTTGTGTTCTATTGTTTAGCATTGGTCACGGTGTGTTCTGTTTCGTCTTCCTCTGCAGTGTCATTGTATATATTAAAACAAAAAATGAAAGAATACAGTGGCGTTAAAAAAATCAAGCCCACAAAATGAAGGGGTTCCAGCTAAGTAAAATGTTTTCTAGTGAATAGTTTTAAAAAAAAGCTTCAAGACAGAAGCCCAAAGGGACACTAAAAATCTCACCAAAGATCAAATCTCACAAGGGTACTTGTCCCTACTGCTAAACACTATCATTCCTCTCCCCCAATATCCCAAACAATTGCACACACCCCAACAAGCCAAAAAATACTGTCTTTCTCTCTAGAAAGGCGGATGGAGGAGGAACTCCTCTATTGCCGCACAAACATATCTCTGCCCAGCAATGTCCTGTTTACATTAATTACCATTGTGCGCTTAAGATCTCATAGTTGGTATTATACTCCTCTTTTGTTTTTCAGTGGCATCAAGACGGAGTAGTGAAGAGCTTATATTTGGAGGCCGCGTTACTGTTAATGGTTCTGTTTGCAATACTCCTCAGGTTGGTTTTTATGTAATTTGGGTTGTATGGATTTTGTCTTAACTATGAAGGTAGAAATGATTTCACCTTTGTGCAGACTCGGGTGGATCCTGCAAGAGACATTATTTACGTGAATGGTAATAGGCTTCCTAAGAAACTACCTCCAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTAGGTCACTTATTCTCTAAGACCAATTTCCCTTTCCTACCCTTAACCCAAGCTTCTCTTGGGAACTTGGCTTTTATGTTCTTCCGTTGCTAATCTATAGAATGCCATGGCAGGTATATTTGTTCATCTGGAAAAAAAGAGTCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGTATGTCAAACTCAAACCTACTGATCATACCGTTTTCAAGCAAAAGAGTGATAACCTTATGATCATTTTGATGCAAGAAATATAGTTTGCAAGTTATTGAACTACAACTTTGTCTTTGCAGGATAAAACATATCCAGGGCAACCCAAACCACGGCTCTTTACAGTTGGCAGACTTGATGTTGCAACGACTGGGTTGATTATAGTGACAAATGATGGTATGGTATACATACTTCTCATGGTTGCTTCCTTATTTAGGATTGCTGTACAAAAGGTTTGGAGTTTAAAGGATAGATCTTGAACCCTTTGCAAAATTACCATTGATTTTCTTTTTCAGGAGATTTTGCTCAAAGTATCTCACATCCTTCATCTGGTTTATCGAAGGAGTAAGTGATTTAAATTTATTTCCATACACTTTCTAATGCATTGTAAAGTTACCTACACAAGTAACTTCTGCCATTATTTTCAGGGAGTAATCTAGAGATAAACTGGTTTGAAAAAATCTTAGACTATAAACATCATATGAGAAATGATTGTGGGCTATGGCCTATAAATCTGTGGCGTATTTATTAAATGAAAATTACTGGAACCTTTATCTACTGACCATTTCAGGGATGAGAAATATTGGACTGATCATCTTTTTTAGTTCTTTTTTCCCCATAAAAATTTTGAATTAGAGCATTTTCTTTTTTATATTGTGCTTCCCAGTACATATAGCTTTTAAAATTTTGAATGTTGGATTTCTGAAAAATGAAAATGCAACATTTGCTCTTTATTATTGTAGATACATTGCAGCAATAGATGGCACTGTTAGTAAGCAAAACCTGATAGCAATTAGTGAGGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCTGTGGAGTTGCTACCACGGCAGCCAGATATATCCAAGCCTCGTCTGCGTATCGTGGTGCTTTATCCATTCATATTATAGTTTTTAAATATCTATTCACTTTCAGTGCATTCATCACTTCTTGTTTGATCTAATTGGTCATGAAGTAATGATTATATACACCAACAAAATCTGCTGCTTTTACCTTAATTGTTTTTCTTTATCTGTATTCTATTATTGTTGATGCTATACAGCAGTCTGTGGAGGAAAATGTATTAATACCATTTTTTCTGCATGCAGCGCTAGTCATGCATTAGCTCCCGACTAACTTATTGTGCTTTTGCAGGTACATGAAGGAAGGAACCATGAAGTTAGGGAACTTGTAAAAGCTGCTGGTCTAGAGGTTAGCATCTGTTCTGACTTTAGTAGACACTTGCCCATTGCTGTGAGGAAGAAGAAATGTTTCATTTTACTTTTTTCATAATACTTTCTTAACAATAACGATAACAATGAGGAAGAAAAATGTTTCATTTTCTTTTTAGGGGCCTTGTCGTATCATTTTGTTCTTGTTGGTATCTCTGCACTGTAGGCCTTTGTTATAGTTAGCTATAGTTCTTCGTGAAAGATTTTTTTTAACTTATAAATATAAACATGTATTTATACCTACCTTGTGTGAGTTTTTTTCCTGCCATTTATTCGATAGCCACACTATATACTCGGACGTAAGGAAACTGGGAATATGACATCAAGGGAGATATCTTTTTAGTGCCATTTTAACTACTTGTTCTATGCTTGCGTTTGTCTGCCAGTTCTATTTGCATGTGTAATTTCTGGGATTTATTGAAGCAGATCTATTCATTAAAGCGTGTAAGGATCGGTGGCTTCAGACTTCCGTCAGATTTAGGGTAATTTCTTGTTGTGATCACCTTTGATTTATTTTTTATTTGTCAAACTTATTATTGTTTGGGAATGGGTTCAAAATCAGATTAGATGATTCACTTGCAATTCATTTTCACATAACAAAAACCAAATAATTAAGGTAAACAATTTCTCCTATTTTTGCATGTAAGTATTCGGAAATGTTGGTGACTAGTATGTTTTAGGGGAAATTGCATTAGATGATAAAAAAAAATTAGAAAAAAACAGCTCATAACACCTCTTTTTTGCATATTGCAAATTTGGCAAATATGACTAGTAATTGACAGTAATCAGACGGTAATCTGCTTTTAAATTTGTCATTTTTGCAATTTAGAAAATGTAGGTTACATGGGCTCTATTATCATAATTTTTTTTTTTTGCTATTTTTGCAGACTACCCATGTTTCAGCATGTTACTATGATAAAAACACCTTTTTCAACCGAACAACAAAAACACCTTTTTCAACCGAGCAACGAAGATTTTAAAAGTTTATTCTTGAAGATAAATTGAAAATAAAACAATTTTAATACTCATCACAAATGATGATCGGGTGGATATAATTCACTCTCTGTCAAGTCTTTCTTCAAGATTTCCCTTTTTATCTTCGGCCACAACCCTCAAGATTGTGCAACATATTTTCATTTTTTGTACAGTTTTTCGAGGTGAAACTAGAAAGACTTTGAAGTTTTAGCTGCTTACTTGTGAACATGAGTGAGATGAATGTGTTGGCATGTAGATTTATTAAAAATTTCTGCATTATTTCAGGCTTGGAAGTTACACTGAACTAAAGCAAAGTGACCTGAAGGCAATTGGTTGGAAAAGTTGA

mRNA sequence

ATGGTTTCATTAGCATCTTCTTCAGTCTCACTTCTCTCAAAACCTTCGTTACTCTTCAACCCCATTCGCGCCATTCGTCGCATTTCATGTTCACTTTCATCCAATTCCACTCCCAACGCCTCCTCTTCATCTTCATCTTCACTGGAGTTCAACATCACATTCGCTCCCCCGAAACCCAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAAATACCGGCGGTCAGCTCTTCATTCCGTGGATAGTTCGCGGCGAAGATGGGAACCTCAAGCTCCAGTCTCATCCTCCTACACGGTTCCTTCATTCCTTGTCGGAGGATGAAACCAAGCCCAAGAAGAAGAAGGTTTCTTCTGGTAAACCCATAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGGTTTTATAATGAGAACATTAGGGAGTCGTCGCAGCGTCTCAGTAAAGTTCTTGCTGCTACTGGAGTGGCATCAAGACGGAGTAGTGAAGAGCTTATATTTGGAGGCCGCGTTACTGTTAATGGTTCTGTTTGCAATACTCCTCAGACTCGGGTGGATCCTGCAAGAGACATTATTTACGTGAATGGTAATAGGCTTCCTAAGAAACTACCTCCAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTATATTTGTTCATCTGGAAAAAAAGAGTCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGATAAAACATATCCAGGGCAACCCAAACCACGGCTCTTTACAGTTGGCAGACTTGATGTTGCAACGACTGGGTTGATTATAGTGACAAATGATGGAGATTTTGCTCAAAGTATCTCACATCCTTCATCTGGTTTATCGAAGGAATACATTGCAGCAATAGATGGCACTGTTAGTAAGCAAAACCTGATAGCAATTAGTGAGGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCTGTGGAGTTGCTACCACGGCAGCCAGATATATCCAAGCCTCGTCTGCGTATCGTGGTACATGAAGGAAGGAACCATGAAGTTAGGGAACTTGTAAAAGCTGCTGGTCTAGAGATCTATTCATTAAAGCGTGTAAGGATCGGTGGCTTCAGACTTCCGTCAGATTTAGGGCTTGGAAGTTACACTGAACTAAAGCAAAGTGACCTGAAGGCAATTGGTTGGAAAAGTTGA

Coding sequence (CDS)

ATGGTTTCATTAGCATCTTCTTCAGTCTCACTTCTCTCAAAACCTTCGTTACTCTTCAACCCCATTCGCGCCATTCGTCGCATTTCATGTTCACTTTCATCCAATTCCACTCCCAACGCCTCCTCTTCATCTTCATCTTCACTGGAGTTCAACATCACATTCGCTCCCCCGAAACCCAAGCCCAAATCCGAAGTTGAAGACCCTTTTCAGTTCATCGATCGAAATACCGGCGGTCAGCTCTTCATTCCGTGGATAGTTCGCGGCGAAGATGGGAACCTCAAGCTCCAGTCTCATCCTCCTACACGGTTCCTTCATTCCTTGTCGGAGGATGAAACCAAGCCCAAGAAGAAGAAGGTTTCTTCTGGTAAACCCATAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGGTTTTATAATGAGAACATTAGGGAGTCGTCGCAGCGTCTCAGTAAAGTTCTTGCTGCTACTGGAGTGGCATCAAGACGGAGTAGTGAAGAGCTTATATTTGGAGGCCGCGTTACTGTTAATGGTTCTGTTTGCAATACTCCTCAGACTCGGGTGGATCCTGCAAGAGACATTATTTACGTGAATGGTAATAGGCTTCCTAAGAAACTACCTCCAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTATATTTGTTCATCTGGAAAAAAAGAGTCAAAGTCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGATAAAACATATCCAGGGCAACCCAAACCACGGCTCTTTACAGTTGGCAGACTTGATGTTGCAACGACTGGGTTGATTATAGTGACAAATGATGGAGATTTTGCTCAAAGTATCTCACATCCTTCATCTGGTTTATCGAAGGAATACATTGCAGCAATAGATGGCACTGTTAGTAAGCAAAACCTGATAGCAATTAGTGAGGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCTGTGGAGTTGCTACCACGGCAGCCAGATATATCCAAGCCTCGTCTGCGTATCGTGGTACATGAAGGAAGGAACCATGAAGTTAGGGAACTTGTAAAAGCTGCTGGTCTAGAGATCTATTCATTAAAGCGTGTAAGGATCGGTGGCTTCAGACTTCCGTCAGATTTAGGGCTTGGAAGTTACACTGAACTAAAGCAAAGTGACCTGAAGGCAATTGGTTGGAAAAGTTGA

Protein sequence

MVSLASSSVSLLSKPSLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPKPKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDETKPKKKKVSSGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAATGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS*

Homology

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BLAST of Chy3G059120 vs. ExPASy Swiss-Prot
Match: Q8L960 (Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR1 PE=1 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 7.1e-143
Identity = 274/419 (65.39%), Postives = 316/419 (75.42%), Query Frame = 0


Query: 2   VSLASSSVSLLSKP-SLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 61
           +S A+S + + + P S  F PIR +R   CS+        SSSSS  +EF+I+FAPPKPK
Sbjct: 10  ISFAASFLKIKAFPLSPRFFPIRTLR---CSV--------SSSSSEPIEFDISFAPPKPK 69

Query: 62  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDET--KPKKKK 121
           P S            T  QLFIPWIVR +DG LKLQS PP R +H+L+ D T   PKKK 
Sbjct: 70  PSSTHGGV-------TPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKD 129

Query: 122 VSSGK----------------PITE---PPKHSKAARRFYNENIRESSQRLSKVLAATGV 181
            S  K                P +     PK SKAARRFYNEN +E  QRLSKVLAA GV
Sbjct: 130 KSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGV 189

Query: 182 ASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKG 241
           ASRR+SEELIF G+VTVNG +CNTPQTRVDP+RDIIYVNGNR+PKKLPPKVY ALNKPKG
Sbjct: 190 ASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKG 249

Query: 242 YICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ 301
           YICSSG+KE KS ISLFD+YL SWDK  PG PKPRLFTVGRLDVATTGLI+VTNDGDFAQ
Sbjct: 250 YICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQ 309

Query: 302 SISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLR 361
            +SHPSS L KEYI  + G + K++L+AISEGT+++GVHC PDSVEL+P+Q DI + RLR
Sbjct: 310 KLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLR 369

Query: 362 IVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IVVHEGRNHEVRELVK AGLE++SLKRVRIGGFRLPSDLGLG + ELKQS+LKA+GWK+
Sbjct: 370 IVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALGWKN 410

[Close]

BLAST of Chy3G059120 vs. ExPASy Swiss-Prot
Match: O67444 (Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_1464 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.5e-33
Identity = 93/255 (36.47%), Postives = 136/255 (53.33%), Query Frame = 0


Query: 149 RLSKVLAATGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPP 208
           R++K L+  GVASRR +E+LI  GRV VNG V  +   +V+P  DI+ V+G   P K   
Sbjct: 5   RINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGK--PVKPQR 64

Query: 209 KVYLALNKPKGYICSSGKKES--KSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATT 268
           K Y+ LNKP  Y+   G+     K++  L  D               R+F VGRLD  T 
Sbjct: 65  KRYIILNKPCCYLTQLGRSPDGRKTIEELIKDI------------PERVFPVGRLDYNTE 124

Query: 269 GLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVEL 328
           GL+I+TNDG+ A  I HP   L K Y+A ++G V ++ L  + +G  ++     PD++ +
Sbjct: 125 GLLILTNDGELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRI 184

Query: 329 LPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTEL 388
           +  + +     L I  HEGR H V+  + A G ++  LKR+ IG  +L   L  G + EL
Sbjct: 185 V--RYEGKNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKL-GKLSPGKWREL 242

Query: 389 KQSDL----KAIGWK 398
            Q +L    KA+G K
Sbjct: 245 NQGELAQLFKAVGLK 242

[Close]

BLAST of Chy3G059120 vs. ExPASy Swiss-Prot
Match: P35159 (Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 168) OX=224308 GN=rluB PE=1 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 6.2e-30
Identity = 83/247 (33.60%), Postives = 130/247 (52.63%), Query Frame = 0


Query: 148 QRLSKVLAATGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLP 207
           +RL KV+A  GVASRR +EELI  G+V VNG V      +V    D I VNG ++ ++ P
Sbjct: 2   ERLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELGVKV-TGSDQIEVNGLKVEREEP 61

Query: 208 PKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTG 267
             VY  L KP+G I ++   + + V++   D+ K+  +        R++ +GRLD  T+G
Sbjct: 62  --VYFLLYKPRGVISAAQDDKGRKVVT---DFFKNIPQ--------RIYPIGRLDYDTSG 121

Query: 268 LIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELL 327
           L+++TNDG+FA  + HP   + K Y+A + G   K+ L  +  G  ++     P   +LL
Sbjct: 122 LLLLTNDGEFANKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLL 181

Query: 328 PRQPDISKPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELK 387
                     +++ +HEGRN +VR + +A G E+  LKR       L   L  G   EL 
Sbjct: 182 SLDKKKQTSIIQLTIHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNL-RGLHTGDARELT 233

Query: 388 QSDLKAI 395
             ++K +
Sbjct: 242 PHEVKRL 233

[Close]

BLAST of Chy3G059120 vs. ExPASy Swiss-Prot
Match: Q9HZ55 (Ribosomal large subunit pseudouridine synthase B OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rluB PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-28
Identity = 87/247 (35.22%), Postives = 128/247 (51.82%), Query Frame = 0


Query: 148 QRLSKVLAATGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLP 207
           ++L KVLA  GV SRR  E  I  GRV VNGSV +  Q RVD + D I V+G+ + ++  
Sbjct: 14  EKLQKVLARLGVGSRRDVEVWIAEGRVNVNGSVASLGQ-RVD-SHDAITVDGHLIRREEA 73

Query: 208 P---KVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVA 267
               +  L  NKP+G +C+    E +  I  FD          P     R   VGRLD+ 
Sbjct: 74  AESVRRVLIYNKPEGEVCTRDDPEGRPTI--FD--------RLPRLRTGRWINVGRLDIN 133

Query: 268 TTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSV 327
           TTGL++ T DG+ A  + HPS  + +EY   + G V+++ +  +  G +++        +
Sbjct: 134 TTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVTEEMIERLLNGVMLEDGPAKFSDI 193

Query: 328 ELLPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYT 387
           +  P     +      VV EGRN EVR L ++ GL +  LKRVR G   L S+L +G Y 
Sbjct: 194 QQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLTSELTMGRYR 247

Query: 388 ELKQSDL 392
           E+ Q ++
Sbjct: 254 EMDQREI 247

[Close]

BLAST of Chy3G059120 vs. ExPASy Swiss-Prot
Match: O05668 (Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium leprae (strain TN) OX=272631 GN=ML1370 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.4e-28
Identity = 84/227 (37.00%), Postives = 120/227 (52.86%), Query Frame = 0


Query: 149 RLSKVLAATGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPP 208
           RL K+L+  G+ASRR++E+LI  GRV V+G +     TRVDP   ++ V+G ++      
Sbjct: 17  RLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVDPDVSVVRVDGVKVVVD-DS 76

Query: 209 KVYLALNKPKG-YICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTG 268
            VYLALNKP+G Y   S  +    V  L +  ++            +LF VGRLD  T G
Sbjct: 77  LVYLALNKPRGMYSTMSDDRGRPCVGDLIERRVRG---------NKKLFHVGRLDADTEG 136

Query: 269 LIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELL 328
           LI++TNDG+ A  + HPS  +SK Y+A + G V +     +S G  +D      D   ++
Sbjct: 137 LILLTNDGELAHRLMHPSHEVSKTYLATVKGAVPRGLGKKLSVGLELDDGPAHVDDFAVV 196

Query: 329 PRQPDISKPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRL 375
              P   K  +R+ +HEGR   VR L+ AAG  +  L R  IG   L
Sbjct: 197 DAIP--GKTLVRLTLHEGRKRIVRRLLTAAGFPVEMLVRTDIGAVSL 231

[Close]

BLAST of Chy3G059120 vs. ExPASy TrEMBL
Match: A0A1S3C3I9 (uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496448 PE=3 SV=1)

HSP 1 Score: 751.1 bits (1938), Expect = 2.3e-213
Identity = 382/398 (95.98%), Postives = 389/398 (97.74%), Query Frame = 0


Query: 1   MVSLASSSVSLLSKPSLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSS+S LSKPSL+FN IRAI RISCSLSSNSTPNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 SGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAATGVASRRSSEELIFGGRVTVNGSV 180
           +GKPITEPPKHSKAARRFYNENIRESSQRLSKVLAA GVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDIS+PRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IYSLKRVRIGG+RLPSDLGLGSYTELKQSDLKAIGWKS
Sbjct: 361 IYSLKRVRIGGYRLPSDLGLGSYTELKQSDLKAIGWKS 396

[Close]

BLAST of Chy3G059120 vs. ExPASy TrEMBL
Match: A0A1S4E166 (ribosomal large subunit pseudouridine synthase B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496448 PE=3 SV=1)

HSP 1 Score: 711.4 bits (1835), Expect = 2.0e-201
Identity = 363/379 (95.78%), Postives = 370/379 (97.63%), Query Frame = 0


Query: 1   MVSLASSSVSLLSKPSLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSS+S LSKPSL+FN IRAI RISCSLSSNSTPNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 SGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAATGVASRRSSEELIFGGRVTVNGSV 180
           +GKPITEPPKHSKAARRFYNENIRESSQRLSKVLAA GVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDIS+PRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLG 380
           IYSLKRVRIGG+RLPSDLG
Sbjct: 361 IYSLKRVRIGGYRLPSDLG 377

[Close]

BLAST of Chy3G059120 vs. ExPASy TrEMBL
Match: A0A6J1GVH4 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457913 PE=3 SV=1)

HSP 1 Score: 705.7 bits (1820), Expect = 1.1e-199
Identity = 357/398 (89.70%), Postives = 374/398 (93.97%), Query Frame = 0


Query: 1   MVSLASSSVSLLSKPSLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA+SS+S+LSKPSL+ NPIRAI RISCSLSSNS PN SSSSSSSLEFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSLEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDETKPKKKKVS 120
           PKS+ +D FQFID+NTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 SGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAATGVASRRSSEELIFGGRVTVNGSV 180
             K + EPPK+SKAARRFYNENIR+SSQRLSKVLAA GVASRRSSEELIF GRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSG+SKEYIAAIDG V
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT+IDGVHC PD+VELLP+QPDI + RLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IYSLKRVRIGGFRLPSDLGLGSY ELKQSDLKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQSDLKAIGWKS 398

[Close]

BLAST of Chy3G059120 vs. ExPASy TrEMBL
Match: A0A6J1JT41 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487252 PE=3 SV=1)

HSP 1 Score: 703.0 bits (1813), Expect = 7.3e-199
Identity = 355/398 (89.20%), Postives = 373/398 (93.72%), Query Frame = 0


Query: 1   MVSLASSSVSLLSKPSLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA+SS+S+LSKPSL+ NPIRAI RISCSLSSNS PN SSSSSSS+EFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSMEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDETKPKKKKVS 120
           PKS+ +D FQFID+NTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 SGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAATGVASRRSSEELIFGGRVTVNGSV 180
             K + EPPK+SKAARRFYNENIR+SSQRLSKVLAA GVASRRSSEELIF GRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSG+SKEYIAAIDG V
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT+IDGVHC PD+VELLP+QPDI + RLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IYSLKRVRIGGFRLPSDLGLGSY ELKQ DLKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQCDLKAIGWKS 398

[Close]

BLAST of Chy3G059120 vs. ExPASy TrEMBL
Match: A0A6J1BVE6 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006060 PE=3 SV=1)

HSP 1 Score: 702.6 bits (1812), Expect = 9.5e-199
Identity = 361/401 (90.02%), Postives = 377/401 (94.01%), Query Frame = 0


Query: 1   MVSLAS--SSVSLLSKPSLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPK 60
           M SLA+  SS+S+LSKPS + NPIRAI RISCSLSSNS PNA  SSSS LEFNITFAPPK
Sbjct: 1   MASLAAALSSLSILSKPSFILNPIRAIPRISCSLSSNSAPNA--SSSSPLEFNITFAPPK 60

Query: 61  PKPKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDETKPKKKK 120
           PKPKSE++ PFQFID NTGGQL IPWIVRGEDGNL+LQSHPPTRFL S+SE ETKP++KK
Sbjct: 61  PKPKSEIQHPFQFIDPNTGGQLLIPWIVRGEDGNLQLQSHPPTRFLQSMSEAETKPRRKK 120

Query: 121 VSSGKPITE-PPKHSKAARRFYNENIRESSQRLSKVLAATGVASRRSSEELIFGGRVTVN 180
            S+ K + E PPKHSKAARRFYNENIR+SSQRLSKVLAA GVASRRSSEELIF GRVTVN
Sbjct: 121 GSADKRVPEPPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN 180

Query: 181 GSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240
           GSVCNTPQTRVDPARD+IYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD
Sbjct: 181 GSVCNTPQTRVDPARDVIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240

Query: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID 300
           DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID
Sbjct: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID 300

Query: 301 GTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLRIVVHEGRNHEVRELVKAA 360
           G VSKQNLIAISEGTIIDGVHCTPDSVELLPRQPD+S+ RLRIVVHEGRNHEVRELVKAA
Sbjct: 301 GAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDVSRSRLRIVVHEGRNHEVRELVKAA 360

Query: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS
Sbjct: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399

[Close]

BLAST of Chy3G059120 vs. NCBI nr
Match: XP_004140075.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucumis sativus] >KGN48104.2 hypothetical protein Csa_003766 [Cucumis sativus])

HSP 1 Score: 759 bits (1959), Expect = 7.37e-276
Identity = 386/398 (96.98%), Postives = 392/398 (98.49%), Query Frame = 0


Query: 1   MVSLASSSVSLLSKPSLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSS+ LLSKPSL+FNPIRAI RISCSLSSNS PNASSSSSSSLEFNITFAPPKPK
Sbjct: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDETKPKKKKVS 120
           PKSEVEDPFQFIDRN+GGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120

Query: 121 SGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAATGVASRRSSEELIFGGRVTVNGSV 180
           +GKPITEPPKHSKAARRFYNENIRESSQRLSKVLAA GVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAIDGTV
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISK RLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 398
           IYSLKRVRIGGFRLPSDLGLGSYTELKQS+LKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398

[Close]

BLAST of Chy3G059120 vs. NCBI nr
Match: XP_008456519.1 (PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 [Cucumis melo])

HSP 1 Score: 750 bits (1936), Expect = 2.19e-272
Identity = 382/398 (95.98%), Postives = 389/398 (97.74%), Query Frame = 0


Query: 1   MVSLASSSVSLLSKPSLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSS+S LSKPSL+FN IRAI RISCSLSSNSTPNASSSSS   EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNASSSSS--FEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 SGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAATGVASRRSSEELIFGGRVTVNGSV 180
           +GKPITEPPKHSKAARRFYNENIRESSQRLSKVLAA GVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDIS+PRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 398
           IYSLKRVRIGG+RLPSDLGLGSYTELKQSDLKAIGWKS
Sbjct: 361 IYSLKRVRIGGYRLPSDLGLGSYTELKQSDLKAIGWKS 396

[Close]

BLAST of Chy3G059120 vs. NCBI nr
Match: XP_038884576.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Benincasa hispida])

HSP 1 Score: 741 bits (1914), Expect = 5.31e-269
Identity = 376/398 (94.47%), Postives = 386/398 (96.98%), Query Frame = 0


Query: 1   MVSLASSSVSLLSKPSLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSS+S LSKPS + NPIRAI RISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSFILNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDETKPKKKKVS 120
           PKSEVE PFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSEVEGPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 SGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAATGVASRRSSEELIFGGRVTVNGSV 180
           + K  TEPPKHSKAARRFYNENIR++SQRLSKVLAA GVASRRSSEELIF GRVTVNGSV
Sbjct: 121 ADKRPTEPPKHSKAARRFYNENIRDASQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLI+VTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLILVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGTIIDG+HCTPDSVELLPRQPDIS+PRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTIIDGIHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 398
           IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 398

[Close]

BLAST of Chy3G059120 vs. NCBI nr
Match: XP_016901969.1 (PREDICTED: ribosomal large subunit pseudouridine synthase B isoform X2 [Cucumis melo])

HSP 1 Score: 711 bits (1836), Expect = 1.86e-257
Identity = 363/379 (95.78%), Postives = 370/379 (97.63%), Query Frame = 0


Query: 1   MVSLASSSVSLLSKPSLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLASSS+S LSKPSL+FN IRAI RISCSLSSNSTPNASSSSS   EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNASSSSS--FEFNITFAPPKPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDETKPKKKKVS 120
           PKS+VEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SEDETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 SGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAATGVASRRSSEELIFGGRVTVNGSV 180
           +GKPITEPPKHSKAARRFYNENIRESSQRLSKVLAA GVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDIS+PRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLG 379
           IYSLKRVRIGG+RLPSDLG
Sbjct: 361 IYSLKRVRIGGYRLPSDLG 377

[Close]

BLAST of Chy3G059120 vs. NCBI nr
Match: XP_022956132.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucurbita moschata] >XP_023515775.1 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6602297.1 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 704 bits (1818), Expect = 2.25e-254
Identity = 357/398 (89.70%), Postives = 374/398 (93.97%), Query Frame = 0


Query: 1   MVSLASSSVSLLSKPSLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA+SS+S+LSKPSL+ NPIRAI RISCSLSSNS PN SSSSSSSLEFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSLEFNITFAPPTPK 60

Query: 61  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDETKPKKKKVS 120
           PKS+ +D FQFID+NTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHS+SE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 SGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAATGVASRRSSEELIFGGRVTVNGSV 180
             K + EPPK+SKAARRFYNENIR+SSQRLSKVLAA GVASRRSSEELIF GRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGTV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSG+SKEYIAAIDG V
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT+IDGVHC PD+VELLP+QPDI + RLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 398
           IYSLKRVRIGGFRLPSDLGLGSY ELKQSDLKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQSDLKAIGWKS 398

[Close]

BLAST of Chy3G059120 vs. TAIR 10
Match: AT2G39140.1 (pseudouridine synthase family protein )

HSP 1 Score: 508.4 bits (1308), Expect = 5.1e-144
Identity = 274/419 (65.39%), Postives = 316/419 (75.42%), Query Frame = 0


Query: 2   VSLASSSVSLLSKP-SLLFNPIRAIRRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 61
           +S A+S + + + P S  F PIR +R   CS+        SSSSS  +EF+I+FAPPKPK
Sbjct: 10  ISFAASFLKIKAFPLSPRFFPIRTLR---CSV--------SSSSSEPIEFDISFAPPKPK 69

Query: 62  PKSEVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSLSEDET--KPKKKK 121
           P S            T  QLFIPWIVR +DG LKLQS PP R +H+L+ D T   PKKK 
Sbjct: 70  PSSTHGGV-------TPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKD 129

Query: 122 VSSGK----------------PITE---PPKHSKAARRFYNENIRESSQRLSKVLAATGV 181
            S  K                P +     PK SKAARRFYNEN +E  QRLSKVLAA GV
Sbjct: 130 KSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGV 189

Query: 182 ASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKG 241
           ASRR+SEELIF G+VTVNG +CNTPQTRVDP+RDIIYVNGNR+PKKLPPKVY ALNKPKG
Sbjct: 190 ASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKG 249

Query: 242 YICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ 301
           YICSSG+KE KS ISLFD+YL SWDK  PG PKPRLFTVGRLDVATTGLI+VTNDGDFAQ
Sbjct: 250 YICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQ 309

Query: 302 SISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKPRLR 361
            +SHPSS L KEYI  + G + K++L+AISEGT+++GVHC PDSVEL+P+Q DI + RLR
Sbjct: 310 KLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLR 369

Query: 362 IVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IVVHEGRNHEVRELVK AGLE++SLKRVRIGGFRLPSDLGLG + ELKQS+LKA+GWK+
Sbjct: 370 IVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALGWKN 410

[Close]

BLAST of Chy3G059120 vs. TAIR 10
Match: AT3G43340.1 (Pseudouridine synthase family protein )

HSP 1 Score: 116.3 bits (290), Expect = 5.6e-26
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 306 IAISEGTIIDGVHCTPDSVELLPRQPDISKPRLRIVVHEGRNHEVRELVKAAGLEIYSLK 365
           +AISEGT+++G+HC PD VEL+P+Q DI +  LRIVVHEGRNHEVRELVK  GLE+ SLK
Sbjct: 1   MAISEGTMVEGIHCVPDLVELMPKQHDIPRAWLRIVVHEGRNHEVRELVKNVGLEVDSLK 60

Query: 366 RVRIGGFRLPSDLG 380
           RVRIGG RLPSDLG
Sbjct: 61  RVRIGGVRLPSDLG 74

The following BLAST results are available for this feature:

BLAST of Chy3G059120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L960	7.1e-143	65.39	Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=A...	[more]
O67444	3.5e-33	36.47	Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex aeolicus (strain V...	[more]
P35159	6.2e-30	33.60	Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 16...	[more]
Q9HZ55	2.0e-28	35.22	Ribosomal large subunit pseudouridine synthase B OS=Pseudomonas aeruginosa (stra...	[more]
O05668	3.4e-28	37.00	Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium leprae (strai...	[more]

BLAST of Chy3G059120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C3I9	2.3e-213	95.98	uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 OS=Cucumis melo OX...	[more]
A0A1S4E166	2.0e-201	95.78	ribosomal large subunit pseudouridine synthase B isoform X2 OS=Cucumis melo OX=3...	[more]
A0A6J1GVH4	1.1e-199	89.70	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=C...	[more]
A0A6J1JT41	7.3e-199	89.20	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=C...	[more]
A0A6J1BVE6	9.5e-199	90.02	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=M...	[more]

BLAST of Chy3G059120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140075.1	7.37e-276	96.98	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cuc...	[more]
XP_008456519.1	2.19e-272	95.98	PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 [Cucumi...	[more]
XP_038884576.1	5.31e-269	94.47	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Ben...	[more]
XP_016901969.1	1.86e-257	95.78	PREDICTED: ribosomal large subunit pseudouridine synthase B isoform X2 [Cucumis ...	[more]
XP_022956132.1	2.25e-254	89.70	putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cuc...	[more]

BLAST of Chy3G059120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39140.1	5.1e-144	65.39	pseudouridine synthase family protein	[more]
AT3G43340.1	5.6e-26	74.32	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 148..207 e-value: 2.9E-13 score: 60.1
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 148..190 e-value: 2.7E-10 score: 39.8
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 148..215 e-value: 9.24689E-10 score: 52.637
IPR006145	Pseudouridine synthase, RsuA/RluA-like	PFAM	PF00849	PseudoU_synth_2	coord: 211..352 e-value: 1.2E-15 score: 57.9
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 144..204 e-value: 1.3E-17 score: 64.8
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 211..390 e-value: 2.2E-46 score: 159.4
IPR042092	Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain	GENE3D	3.30.70.1560		coord: 288..373 e-value: 2.2E-46 score: 159.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..134
None	No IPR available	PANTHER	PTHR47683	PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED	coord: 39..397
None	No IPR available	PROSITE	PS50889	S4	coord: 148..217 score: 14.076136
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 133..230
IPR018496	Pseudouridine synthase, RsuA/RluB/E/F, conserved site	PROSITE	PS01149	PSI_RSU	coord: 259..273
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 210..390

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G059120.1	Chy3G059120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000488	maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
biological_process	GO:0000489	maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
biological_process	GO:0032544	plastid translation
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016866	intramolecular transferase activity