Chy3G058870 (gene) Cucumber (hystrix) v1

Overview
NameChy3G058870
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionPMD domain-containing protein
LocationchrH03: 12520532 .. 12520872 (-)
RNA-Seq ExpressionChy3G058870
SyntenyChy3G058870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCTGCTTGAGCTGTTTTGTCCTTCCGAAGAACCGCAACAACGTCCAAGGTCATTAGCCGAAAAAGATGAGTCATGGTCGGGTTCTTGGTGTAGGGAAAGAGAGTAGCCGTAGCTTCGACCATCCTTGCCAGCATATTATGGTTTGGATGCTCTTGCCCAAGAGAAAGAGGGTTCAGGCCAGTGCAATGCGAAATTCCCAGTCCACTACTTCTATGCATGGCTAGACCGGTATTTTCCTAAGTTGTATATGAGATTGCCGCTTTCGCACCTGGGAAAGCAGAAAGATTATGCCTCAGAGATGCTTGCAATTGAGAACATTGAAGTCGGGAATTGA

mRNA sequence

ATGGCTCTCTGCTTGAGCTGTTTTGTCCTTCCGAAGAACCGCAACAACGTCCAAGCATATTATGGTTTGGATGCTCTTGCCCAAGAGAAAGAGGGTTCAGGCCAGTGCAATGCGAAATTCCCAGTCCACTACTTCTATGCATGGCTAGACCGGTATTTTCCTAAGTTGTATATGAGATTGCCGCTTTCGCACCTGGGAAAGCAGAAAGATTATGCCTCAGAGATGCTTGCAATTGAGAACATTGAAGTCGGGAATTGA

Coding sequence (CDS)

ATGGCTCTCTGCTTGAGCTGTTTTGTCCTTCCGAAGAACCGCAACAACGTCCAAGCATATTATGGTTTGGATGCTCTTGCCCAAGAGAAAGAGGGTTCAGGCCAGTGCAATGCGAAATTCCCAGTCCACTACTTCTATGCATGGCTAGACCGGTATTTTCCTAAGTTGTATATGAGATTGCCGCTTTCGCACCTGGGAAAGCAGAAAGATTATGCCTCAGAGATGCTTGCAATTGAGAACATTGAAGTCGGGAATTGA

Protein sequence

MALCLSCFVLPKNRNNVQAYYGLDALAQEKEGSGQCNAKFPVHYFYAWLDRYFPKLYMRLPLSHLGKQKDYASEMLAIENIEVGN*
Homology
BLAST of Chy3G058870 vs. ExPASy TrEMBL
Match: A0A7J0D964 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0004140 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.7e-23
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 20 YYGLDALAQEKEGSGQCNAKFPVHYFYAWLDRYFPKLYMRLPLSHLGKQKDYASEMLAIE 79
          YYGL A+AQEK G GQCNA+FPVHYFYAWLD+YFPKLYMRLPL  LGK KDY  EMLAIE
Sbjct: 22 YYGLGAVAQEKVGPGQCNAEFPVHYFYAWLDQYFPKLYMRLPLLDLGKLKDYVPEMLAIE 81

Query: 80 NIEVG 85
          NIE G
Sbjct: 82 NIEAG 86

BLAST of Chy3G058870 vs. ExPASy TrEMBL
Match: B9TJL6 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1990370 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.2e-23
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 20 YYGLDALAQEKEGSGQCNAKFPVHYFYAWLDRYFPKLYMRLPLSHLGKQKDYASEMLAIE 79
          YYGL A+AQ+K G GQCNA+FPVHYFYAWLD+YFPKLYMRLPL  LGK KDY  EMLAIE
Sbjct: 22 YYGLGAVAQDKLGPGQCNAEFPVHYFYAWLDQYFPKLYMRLPLPDLGKLKDYVPEMLAIE 81

Query: 80 NIEVG 85
          NIE G
Sbjct: 82 NIEAG 86

BLAST of Chy3G058870 vs. ExPASy TrEMBL
Match: B9TCM5 (Uncharacterized protein (Fragment) OS=Ricinus communis OX=3988 GN=RCOM_2116740 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.2e-23
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 20 YYGLDALAQEKEGSGQCNAKFPVHYFYAWLDRYFPKLYMRLPLSHLGKQKDYASEMLAIE 79
          YYGL A+AQ+K G GQCNA+FPVHYFYAWLD+YFPKLYMRLPL  LGK KDY  EMLAIE
Sbjct: 22 YYGLGAVAQDKLGPGQCNAEFPVHYFYAWLDQYFPKLYMRLPLPDLGKLKDYVPEMLAIE 81

Query: 80 NIEVG 85
          NIE G
Sbjct: 82 NIEAG 86

BLAST of Chy3G058870 vs. ExPASy TrEMBL
Match: A0A6V7PZ44 (Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS19158 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.8e-17
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 29 EKEGSGQCNAKFPVHYFYAWLDRYFPKLYMRLPLSHLGKQKDYASEMLAIENIEVG 85
          +K G GQCNA+FPVHYFYAW ++YFPKLYM+LPL  LGK KDY  EMLAIENIE G
Sbjct: 44 QKVGPGQCNAEFPVHYFYAWRNQYFPKLYMKLPLPDLGKLKDYVPEMLAIENIEAG 99

BLAST of Chy3G058870 vs. ExPASy TrEMBL
Match: A5AFS6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004352 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.3e-16
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 0

Query: 34  GQCNAKFPVHYFYAWLDRYFPKLYMRLPLSHLGKQKDYASEMLAIENIEVG 85
           GQCNA+FPVHYFYAWLD+ FPKLYMRLPL  LGK KDY  EMLAIENIE G
Sbjct: 60  GQCNAEFPVHYFYAWLDQSFPKLYMRLPLPDLGKLKDYVPEMLAIENIEAG 110

BLAST of Chy3G058870 vs. NCBI nr
Match: GFS28827.1 (hypothetical protein Acr_00g0004140 [Actinidia rufa] >GFS28840.1 hypothetical protein Acr_00g0004230 [Actinidia rufa] >GFS28850.1 hypothetical protein Acr_00g0004280 [Actinidia rufa])

HSP 1 Score: 115 bits (287), Expect = 5.76e-31
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 20 YYGLDALAQEKEGSGQCNAKFPVHYFYAWLDRYFPKLYMRLPLSHLGKQKDYASEMLAIE 79
          YYGL A+AQEK G GQCNA+FPVHYFYAWLD+YFPKLYMRLPL  LGK KDY  EMLAIE
Sbjct: 22 YYGLGAVAQEKVGPGQCNAEFPVHYFYAWLDQYFPKLYMRLPLLDLGKLKDYVPEMLAIE 81

Query: 80 NIEVG 84
          NIE G
Sbjct: 82 NIEAG 86

BLAST of Chy3G058870 vs. NCBI nr
Match: EEF26390.1 (conserved hypothetical protein, partial [Ricinus communis])

HSP 1 Score: 114 bits (284), Expect = 1.56e-30
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 20 YYGLDALAQEKEGSGQCNAKFPVHYFYAWLDRYFPKLYMRLPLSHLGKQKDYASEMLAIE 79
          YYGL A+AQ+K G GQCNA+FPVHYFYAWLD+YFPKLYMRLPL  LGK KDY  EMLAIE
Sbjct: 22 YYGLGAVAQDKLGPGQCNAEFPVHYFYAWLDQYFPKLYMRLPLPDLGKLKDYVPEMLAIE 81

Query: 80 NIEVG 84
          NIE G
Sbjct: 82 NIEAG 86

BLAST of Chy3G058870 vs. NCBI nr
Match: EEF23949.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 114 bits (284), Expect = 1.65e-30
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 20 YYGLDALAQEKEGSGQCNAKFPVHYFYAWLDRYFPKLYMRLPLSHLGKQKDYASEMLAIE 79
          YYGL A+AQ+K G GQCNA+FPVHYFYAWLD+YFPKLYMRLPL  LGK KDY  EMLAIE
Sbjct: 22 YYGLGAVAQDKLGPGQCNAEFPVHYFYAWLDQYFPKLYMRLPLPDLGKLKDYVPEMLAIE 81

Query: 80 NIEVG 84
          NIE G
Sbjct: 82 NIEAG 86

BLAST of Chy3G058870 vs. NCBI nr
Match: KAF7117298.1 (hypothetical protein RHSIM_RhsimMtG0003800 [Rhododendron simsii])

HSP 1 Score: 115 bits (287), Expect = 1.72e-28
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 20  YYGLDALAQEKEGSGQCNAKFPVHYFYAWLDRYFPKLYMRLPLSHLGKQKDYASEMLAIE 79
           YYGL A+AQEK G GQCNA+FPVHYFYAWLD+YFPKLYMRLPL  LGK KDY  EMLAIE
Sbjct: 87  YYGLGAVAQEKLGPGQCNAEFPVHYFYAWLDQYFPKLYMRLPLPDLGKLKDYVPEMLAIE 146

Query: 80  NIEVG 84
           NIE G
Sbjct: 147 NIEAG 151

BLAST of Chy3G058870 vs. NCBI nr
Match: CAD1835947.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 94.7 bits (234), Expect = 1.76e-22
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0

Query: 29 EKEGSGQCNAKFPVHYFYAWLDRYFPKLYMRLPLSHLGKQKDYASEMLAIENIEVG 84
          +K G GQCNA+FPVHYFYAW ++YFPKLYM+LPL  LGK KDY  EMLAIENIE G
Sbjct: 44 QKVGPGQCNAEFPVHYFYAWRNQYFPKLYMKLPLPDLGKLKDYVPEMLAIENIEAG 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J0D9643.7e-2381.54Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0004140 PE=4 SV=1[more]
B9TJL68.2e-2380.00Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1990370 PE=4 SV=1[more]
B9TCM58.2e-2380.00Uncharacterized protein (Fragment) OS=Ricinus communis OX=3988 GN=RCOM_2116740 P... [more]
A0A6V7PZ448.8e-1775.00Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS... [more]
A5AFS63.3e-1682.35Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004352 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
GFS28827.15.76e-3181.54hypothetical protein Acr_00g0004140 [Actinidia rufa] >GFS28840.1 hypothetical pr... [more]
EEF26390.11.56e-3080.00conserved hypothetical protein, partial [Ricinus communis][more]
EEF23949.11.65e-3080.00conserved hypothetical protein [Ricinus communis][more]
KAF7117298.11.72e-2881.54hypothetical protein RHSIM_RhsimMtG0003800 [Rhododendron simsii][more]
CAD1835947.11.76e-2275.00unnamed protein product [Ananas comosus var. bracteatus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G058870.1Chy3G058870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion