Chy3G058790 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTTAGCCATGGAGAGCTATCTTCAATTTTGAGTTTAAAATTCCGATTGCTTGCACACGAGAACAATATTCTTTTCATTTAGTCTCAACTTATTAATGTGATTTGGTTTATATTTTTTTCAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGGTAAGGAAGCAACACCACTGTTGTTCTTCCTTTTCTTCTTCTTCTTCTTCTTATTATTATTATTTTATGATTGATTGCTAGTAAACGAAACTATACCCTTTTCCCTTGTATCAGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAACAGTAATCCCTCTTTCTCTCTCTTTTTGTTCATTCATGCTTGAGTTGTTTGATTGTCGATGAACAATTTTGCTGCCCTTTTACGCTTTAATTGCTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGCCAAGGGACGAGTTTTCTGATTTTTCACGTGTGGCTGTGTTGGCTTTCTGATGGTGTTTGTTTTCAGTTAAGAGAAAAGAAAAACTACCGGAGGGCTCGATGTCTTGGCATTCTAGTTTGTTTAGTTATGGATTCATACGGACTCAAGTAATTGATCTTCTACGTGTTTGTTAGTATTTAGGAGTTGTATATTAGAGCCGTGTAGCATTTTCCATAGATGCAGTTGATTTTCATTCAGTCAGCATTGACGTTTCTGTGGTGTTTGGATCCAGTTAAGATAAAACAATTTTTATAGGATCATGTAGTGCAGGATTTGATTTAAGCTATATCTTAGTGTCCTGGTTTGTTTACTTATTGATTCATACGAACCCATGTATTTAATCTTCTATGCGTTTATTAGTATTTAGGAGTTAGATGTAAGAGCTGTGTAGCATTTTCGATAGGATGCAGTGATTCAGTCAGTATTGACGTTTTTGTGGTGTTTGCATTCAGTTAAGAGAAAACAAGAACTATGGGAATATTCAGTTCAGGACTTGA ATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAACATTAAGAGAAAAGAAAAACTACCGGAGGGCTCGATGTCTTGGCATTCTAGTTTGTTTAGTTATGGATTCATACGGACTCAATTAAGAGAAAACAAGAACTATGGGAATATTCAGTTCAGGACTTGA ATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAACATTAAGAGAAAAGAAAAACTACCGGAGGGCTCGATGTCTTGGCATTCTAGTTTGTTTAGTTATGGATTCATACGGACTCAATTAAGAGAAAACAAGAACTATGGGAATATTCAGTTCAGGACTTGA MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNIKRKEKLPEGSMSWHSSLFSYGFIRTQLRENKNYGNIQFRT* Homology
BLAST of Chy3G058790 vs. ExPASy Swiss-Prot
Match: Q9SYA6 (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 7.3e-31 Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0
BLAST of Chy3G058790 vs. ExPASy Swiss-Prot
Match: Q8LFJ6 (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=3702 GN=NRPB10 PE=1 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 4.8e-30 Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 0
BLAST of Chy3G058790 vs. ExPASy Swiss-Prot
Match: Q39290 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=3708 PE=3 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 4.8e-30 Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 0
BLAST of Chy3G058790 vs. ExPASy Swiss-Prot
Match: Q55AB6 (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum OX=44689 GN=polr2l PE=3 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 4.9e-27 Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0
BLAST of Chy3G058790 vs. ExPASy Swiss-Prot
Match: Q32P78 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913 GN=POLR2L PE=1 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 8.4e-27 Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 0
BLAST of Chy3G058790 vs. ExPASy TrEMBL
Match: M8D4I9 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Aegilops tauschii OX=37682 GN=F775_26628 PE=3 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 3.8e-30 Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0
BLAST of Chy3G058790 vs. ExPASy TrEMBL
Match: A0A5A7UPU3 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold371G00170 PE=3 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 4.9e-30 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
BLAST of Chy3G058790 vs. ExPASy TrEMBL
Match: A0A6J1KEH3 (DNA-directed RNA polymerase subunit 10-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492503 PE=3 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 4.9e-30 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
BLAST of Chy3G058790 vs. ExPASy TrEMBL
Match: A0A6J1KRF4 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucurbita maxima OX=3661 GN=LOC111496538 PE=3 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 4.9e-30 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
BLAST of Chy3G058790 vs. ExPASy TrEMBL
Match: A0A446NTH6 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Av1G210240 PE=3 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 4.9e-30 Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0
BLAST of Chy3G058790 vs. NCBI nr
Match: KAF3631577.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Capsicum annuum]) HSP 1 Score: 143 bits (361), Expect = 3.04e-42 Identity = 67/76 (88.16%), Postives = 67/76 (88.16%), Query Frame = 0
BLAST of Chy3G058790 vs. NCBI nr
Match: XP_004138685.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus] >XP_008456558.1 PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo] >XP_022132211.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Momordica charantia] >XP_022951011.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita moschata] >XP_023002779.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita maxima] >XP_038884312.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Benincasa hispida] >XP_038885728.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Benincasa hispida] >KAG6585165.1 DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020085.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita argyrosperma subsp. argyrosperma] >KGN63029.1 hypothetical protein Csa_022113 [Cucumis sativus]) HSP 1 Score: 140 bits (354), Expect = 2.30e-41 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
BLAST of Chy3G058790 vs. NCBI nr
Match: XP_022961651.1 (DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata] >XP_022997628.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita maxima] >XP_023545653.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita pepo subsp. pepo]) HSP 1 Score: 140 bits (354), Expect = 2.30e-41 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
BLAST of Chy3G058790 vs. NCBI nr
Match: XP_003578831.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Brachypodium distachyon] >KQJ91997.1 hypothetical protein BRADI_4g41090v3 [Brachypodium distachyon]) HSP 1 Score: 140 bits (353), Expect = 3.26e-41 Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0
BLAST of Chy3G058790 vs. NCBI nr
Match: XP_037407127.1 (DNA-directed RNA polymerase subunit 10-like protein [Triticum dicoccoides] >EMS59971.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Triticum urartu]) HSP 1 Score: 140 bits (353), Expect = 3.26e-41 Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0
BLAST of Chy3G058790 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit ) HSP 1 Score: 134.4 bits (337), Expect = 5.2e-32 Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0
BLAST of Chy3G058790 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit ) HSP 1 Score: 131.7 bits (330), Expect = 3.4e-31 Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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