Chy3G058790 (gene) Cucumber (hystrix) v1

Overview


Name	Chy3G058790
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC5
Location	chrH03: 12463962 .. 12465053 (+)
RNA-Seq Expression	Chy3G058790
Synteny	Chy3G058790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTTAGCCATGGAGAGCTATCTTCAATTTTGAGTTTAAAATTCCGATTGCTTGCACACGAGAACAATATTCTTTTCATTTAGTCTCAACTTATTAATGTGATTTGGTTTATATTTTTTTCAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGGTAAGGAAGCAACACCACTGTTGTTCTTCCTTTTCTTCTTCTTCTTCTTCTTATTATTATTATTTTATGATTGATTGCTAGTAAACGAAACTATACCCTTTTCCCTTGTATCAGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAACAGTAATCCCTCTTTCTCTCTCTTTTTGTTCATTCATGCTTGAGTTGTTTGATTGTCGATGAACAATTTTGCTGCCCTTTTACGCTTTAATTGCTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGCCAAGGGACGAGTTTTCTGATTTTTCACGTGTGGCTGTGTTGGCTTTCTGATGGTGTTTGTTTTCAGTTAAGAGAAAAGAAAAACTACCGGAGGGCTCGATGTCTTGGCATTCTAGTTTGTTTAGTTATGGATTCATACGGACTCAAGTAATTGATCTTCTACGTGTTTGTTAGTATTTAGGAGTTGTATATTAGAGCCGTGTAGCATTTTCCATAGATGCAGTTGATTTTCATTCAGTCAGCATTGACGTTTCTGTGGTGTTTGGATCCAGTTAAGATAAAACAATTTTTATAGGATCATGTAGTGCAGGATTTGATTTAAGCTATATCTTAGTGTCCTGGTTTGTTTACTTATTGATTCATACGAACCCATGTATTTAATCTTCTATGCGTTTATTAGTATTTAGGAGTTAGATGTAAGAGCTGTGTAGCATTTTCGATAGGATGCAGTGATTCAGTCAGTATTGACGTTTTTGTGGTGTTTGCATTCAGTTAAGAGAAAACAAGAACTATGGGAATATTCAGTTCAGGACTTGA

mRNA sequence

ATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAACATTAAGAGAAAAGAAAAACTACCGGAGGGCTCGATGTCTTGGCATTCTAGTTTGTTTAGTTATGGATTCATACGGACTCAATTAAGAGAAAACAAGAACTATGGGAATATTCAGTTCAGGACTTGA

Coding sequence (CDS)

ATGATCATTCCAGTTCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTGCAGGCAGATTATTCAGAAGGTGATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTTGACCTTATTGAGAAGCTTCTTAATTACAACATTAAGAGAAAAGAAAAACTACCGGAGGGCTCGATGTCTTGGCATTCTAGTTTGTTTAGTTATGGATTCATACGGACTCAATTAAGAGAAAACAAGAACTATGGGAATATTCAGTTCAGGACTTGA

Protein sequence

MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNIKRKEKLPEGSMSWHSSLFSYGFIRTQLRENKNYGNIQFRT*

Homology

[Close]

BLAST of Chy3G058790 vs. ExPASy Swiss-Prot
Match: Q9SYA6 (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.3e-31
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNIKRK 68
          NYN   K
Sbjct: 61 NYNTMEK 67

[Close]

BLAST of Chy3G058790 vs. ExPASy Swiss-Prot
Match: Q8LFJ6 (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=3702 GN=NRPB10 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-30
Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNIKRK 68
          NYN   K
Sbjct: 61 NYNTLEK 67

[Close]

BLAST of Chy3G058790 vs. ExPASy Swiss-Prot
Match: Q39290 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-30
Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNIKRK 68
          NYN   K
Sbjct: 61 NYNTLEK 67

[Close]

BLAST of Chy3G058790 vs. ExPASy Swiss-Prot
Match: Q55AB6 (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum OX=44689 GN=polr2l PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.9e-27
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60

Query: 61 NY 63
          NY
Sbjct: 61 NY 62

[Close]

BLAST of Chy3G058790 vs. ExPASy Swiss-Prot
Match: Q32P78 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913 GN=POLR2L PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.4e-27
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 61 NY 63
          NY
Sbjct: 61 NY 62

[Close]

BLAST of Chy3G058790 vs. ExPASy TrEMBL
Match: M8D4I9 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Aegilops tauschii OX=37682 GN=F775_26628 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.8e-30
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
           MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 140 MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 199

Query: 61  NYNI 65
           NYNI
Sbjct: 200 NYNI 203

[Close]

BLAST of Chy3G058790 vs. ExPASy TrEMBL
Match: A0A5A7UPU3 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold371G00170 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.9e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Chy3G058790 vs. ExPASy TrEMBL
Match: A0A6J1KEH3 (DNA-directed RNA polymerase subunit 10-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492503 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.9e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Chy3G058790 vs. ExPASy TrEMBL
Match: A0A6J1KRF4 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucurbita maxima OX=3661 GN=LOC111496538 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.9e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 64
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Chy3G058790 vs. ExPASy TrEMBL
Match: A0A446NTH6 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Av1G210240 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.9e-30
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNIK 66
          NYN K
Sbjct: 61 NYNSK 65

[Close]

BLAST of Chy3G058790 vs. NCBI nr
Match: KAF3631577.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Capsicum annuum])

HSP 1 Score: 143 bits (361), Expect = 3.04e-42
Identity = 67/76 (88.16%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDEYLDLLQADYSEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNIKRKEKLPEGSMS 76
          NYN   KE LP  S S
Sbjct: 61 NYNTPVKETLPHQSPS 76

[Close]

BLAST of Chy3G058790 vs. NCBI nr
Match: XP_004138685.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus] >XP_008456558.1 PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo] >XP_022132211.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Momordica charantia] >XP_022951011.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita moschata] >XP_023002779.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita maxima] >XP_038884312.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Benincasa hispida] >XP_038885728.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Benincasa hispida] >KAG6585165.1 DNA-directed RNA polymerase subunit 10-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020085.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita argyrosperma subsp. argyrosperma] >KGN63029.1 hypothetical protein Csa_022113 [Cucumis sativus])

HSP 1 Score: 140 bits (354), Expect = 2.30e-41
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 63
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Chy3G058790 vs. NCBI nr
Match: XP_022961651.1 (DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata] >XP_022997628.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita maxima] >XP_023545653.1 DNA-directed RNA polymerase subunit 10-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140 bits (354), Expect = 2.30e-41
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYN 63
          NYN
Sbjct: 61 NYN 63

[Close]

BLAST of Chy3G058790 vs. NCBI nr
Match: XP_003578831.1 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Brachypodium distachyon] >KQJ91997.1 hypothetical protein BRADI_4g41090v3 [Brachypodium distachyon])

HSP 1 Score: 140 bits (353), Expect = 3.26e-41
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNIKRK 67
          NYN   K
Sbjct: 61 NYNTLEK 67

[Close]

BLAST of Chy3G058790 vs. NCBI nr
Match: XP_037407127.1 (DNA-directed RNA polymerase subunit 10-like protein [Triticum dicoccoides] >EMS59971.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Triticum urartu])

HSP 1 Score: 140 bits (353), Expect = 3.26e-41
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNIKRK 67
          NYN   K
Sbjct: 61 NYNTLEK 67

[Close]

BLAST of Chy3G058790 vs. TAIR 10
Match: AT1G61700.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 134.4 bits (337), Expect = 5.2e-32
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNIKRK 68
          NYN   K
Sbjct: 61 NYNTMEK 67

[Close]

BLAST of Chy3G058790 vs. TAIR 10
Match: AT1G11475.1 (RNA polymerases N / 8 kDa subunit )

HSP 1 Score: 131.7 bits (330), Expect = 3.4e-31
Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNIKRK 68
          NYN   K
Sbjct: 61 NYNTLEK 67

The following BLAST results are available for this feature:

BLAST of Chy3G058790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYA6	7.3e-31	89.55	DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3...	[more]
Q8LFJ6	4.8e-30	89.55	DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=...	[more]
Q39290	4.8e-30	89.55	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=...	[more]
Q55AB6	4.9e-27	88.71	DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium disc...	[more]
Q32P78	8.4e-27	83.87	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913...	[more]

BLAST of Chy3G058790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M8D4I9	3.8e-30	98.44	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Aegilops tauschii ...	[more]
A0A5A7UPU3	4.9e-30	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucumis melo var. ...	[more]
A0A6J1KEH3	4.9e-30	100.00	DNA-directed RNA polymerase subunit 10-like protein OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1KRF4	4.9e-30	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Cucurbita maxima O...	[more]
A0A446NTH6	4.9e-30	96.92	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Av1G...	[more]

BLAST of Chy3G058790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3631577.1	3.04e-42	88.16	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Capsicum annuum]	[more]
XP_004138685.1	2.30e-41	100.00	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus] >XP...	[more]
XP_022961651.1	2.30e-41	100.00	DNA-directed RNA polymerase subunit 10-like protein [Cucurbita moschata] >XP_022...	[more]
XP_003578831.1	3.26e-41	94.03	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Brachypodium distach...	[more]
XP_037407127.1	3.26e-41	94.03	DNA-directed RNA polymerase subunit 10-like protein [Triticum dicoccoides] >EMS5...	[more]

BLAST of Chy3G058790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61700.1	5.2e-32	89.55	RNA polymerases N / 8 kDa subunit	[more]
AT1G11475.1	3.4e-31	89.55	RNA polymerases N / 8 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PFAM	PF01194	RNA_pol_N	coord: 1..59 e-value: 1.5E-31 score: 108.4
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PANTHER	PTHR23431	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 FAMILY MEMBER	coord: 1..67
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	HAMAP	MF_00250	RNApol_arch_N	coord: 1..63 score: 19.33688
None	No IPR available	GENE3D	1.10.10.60		coord: 1..69 e-value: 3.9E-39 score: 134.7
None	No IPR available	PANTHER	PTHR23431:SF6	SUBFAMILY NOT NAMED	coord: 1..67
IPR020789	RNA polymerases, subunit N, zinc binding site	PROSITE	PS01112	RNA_POL_N_8KD	coord: 2..11
IPR023580	RNA polymerase subunit RPB10	SUPERFAMILY	46924	RNA polymerase subunit RPB10	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy3G058790.1	Chy3G058790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006360	transcription by RNA polymerase I
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0042797	tRNA transcription by RNA polymerase III
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding