Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGGCTGCGGGTTGACAACCATCGTCATCGAAAGCTAAATAAAATTGTTGAAAAAGACGTTTCAGGCCATTGTTGTGATGAGGGGCCCAACAGGCAGTGGCTTCGGTTGGAAAGATGGCGTCAAGTGCATCATCGCCGAGAGGGACGTGTTCGACAATTGGGTCGGGGTAAAATTCTAAACTTAATGAAATGACTAACGGGGTATACTGGATTACTAAACACTTTGGTTTTTTTTTAATTTGTCAGAAGCATCCTACAACAAAAGGACTCCTGAACAAGCCCTTCCCACATTACGACGAGTTGTCGTATGTGTTTGGGAAAGATCGCACGACTGGTGCCAGTGCACAGATGTTCGTGGACATTGGGTCCAACGTGACAGGACCCAACAATGGTGTCCCCGTAGAGAATGGCCTTGAGATCGAGTTTCTAACTATGTGCAGCCCGAGAATGAACATGTCGCCAAACAACATGATGGCCAGTCACTCTGGTCGAACAAGCGATGCTAGGGCAGGTTTTAGTGGACAGAAAAGGAAACGCGACATGCAGCAATTGGAGACTTACGATCTGATCCAGAATTGCATGGACGCTGCAACTGATCAACTTAAGACCATTGCAGAATGGCCTAATAAAACGATCAACTGGGAGGACGCCATGGTGTAGAAGGTCATGACGCATATGGAGTCCATCCCAAGCCTTACTATGGAGGACATCAGTAAATGTGTGATGATAGTGACGGAGAAGGTGTGGCTAATGAGAAGCTTCATTAGGATGTCAAATCCGATGAAGGTCGCTTACTACAGGATCCTCCTCCGCGATAACCCATGA
mRNA sequence
ATGCTCGGCTGCGGGTTGACAACCATCGTCATCGAAAGCTAAATAAAATTGTTGAAAAAGACGTTTCAGGCCATTGTTGTGATGAGGGGCCCAACAGGCAGTGGCTTCGGTTGGAAAGATGGCGTCAAGTGCATCATCGCCGAGAGGGACGTGTTCGACAATTGGGTCGGGAAGCATCCTACAACAAAAGGACTCCTGAACAAGCCCTTCCCACATTACGACGAGTTGTCGTATGTGTTTGGGAAAGATCGCACGACTGGTGCCAGTGCACAGATGTTCGTGGACATTGGGTCCAACGTGACAGGACCCAACAATGGTGTCCCCGTAGAGAATGGCCTTGAGATCGAGTTTCTAACTATGTGCAGCCCGAGAATGAACATGTCGCCAAACAACATGATGGCCAGTCACTCTGGTCGAACAAGCGATGCTAGGGCAGGTTTTAGTGGACAGAAAAGGAAACGCGACATGCAGCAATTGGAGACTTACGATCTGATCCAGAATTGCATGGACGCTGCAACTGATCAACTTAAGACCATTGCAGAATGGCCTAATAAAACGATCAACTGGGAGGACGCCATGGTGTAGAAGGTCATGACGCATATGGAGTCCATCCCAAGCCTTACTATGGAGGACATCAGTAAATGTGTGATGATAGTGACGGAGAAGGTGTGGCTAATGAGAAGCTTCATTAGGATGTCAAATCCGATGAAGGTCGCTTACTACAGGATCCTCCTCCGCGATAACCCATGA
Coding sequence (CDS)
ATGCTCGGCTGCGGGTTGACAACCATCGTCATCGAAAGCTAAATAAAATTGTTGAAAAAGACGTTTCAGGCCATTGTTGTGATGAGGGGCCCAACAGGCAGTGGCTTCGGTTGGAAAGATGGCGTCAAGTGCATCATCGCCGAGAGGGACGTGTTCGACAATTGGGTCGGGAAGCATCCTACAACAAAAGGACTCCTGAACAAGCCCTTCCCACATTACGACGAGTTGTCGTATGTGTTTGGGAAAGATCGCACGACTGGTGCCAGTGCACAGATGTTCGTGGACATTGGGTCCAACGTGACAGGACCCAACAATGGTGTCCCCGTAGAGAATGGCCTTGAGATCGAGTTTCTAACTATGTGCAGCCCGAGAATGAACATGTCGCCAAACAACATGATGGCCAGTCACTCTGGTCGAACAAGCGATGCTAGGGCAGGTTTTAGTGGACAGAAAAGGAAACGCGACATGCAGCAATTGGAGACTTACGATCTGATCCAGAATTGCATGGACGCTGCAACTGATCAACTTAAGACCATTGCAGAATGGCCTAATAAAACGATCAACTGGGAGGACGCCATGGTGTAGAAGGTCATGACGCATATGGAGTCCATCCCAAGCCTTACTATGGAGGACATCAGTAAATGTGTGATGATAGTGACGGAGAAGGTGTGGCTAATGAGAAGCTTCATTAGGATGTCAAATCCGATGAAGGTCGCTTACTACAGGATCCTCCTCCGCGATAACCCATGA
Protein sequence
MLGCGLTTIVIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHPTTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTMCSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIAEWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAYYRILLRDNP*
Homology
BLAST of Chy3G058110 vs. ExPASy TrEMBL
Match:
A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1)
HSP 1 Score: 275.0 bits (702), Expect = 3.1e-70
Identity = 140/239 (58.58%), Postives = 164/239 (68.62%), Query Frame = 0
Query: 10 VIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHPTTKGLLNKP 69
VIE+ IKLLKKTFQAI MRGP GSGFGW D VKCII ERDVFD+WV HP KGLLNKP
Sbjct: 3 VIENRIKLLKKTFQAIAEMRGPAGSGFGWNDDVKCIITERDVFDHWVWTHPAAKGLLNKP 62
Query: 70 FPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTMCSPRMNMSP 129
FPHYD L VP ++ +++EF MCSPRMNMSP
Sbjct: 63 FPHYDALP-----------------------------VPTKDVIDMEFPAMCSPRMNMSP 122
Query: 130 NNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIAEWPNKTINW 189
NMM SGR++D R G +GQKRK MQQ ETYDLI CM+AATDQL+TIAEWP K ++W
Sbjct: 123 ENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSW 182
Query: 190 EDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAYYRILLRDN 249
EDAM +V+ +E+IP+LTM + SKCVM+V +KV LMRSFI+M + MK Y RILL N
Sbjct: 183 EDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGN 212
BLAST of Chy3G058110 vs. ExPASy TrEMBL
Match:
A0A5D3DLC6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002060 PE=4 SV=1)
HSP 1 Score: 245.7 bits (626), Expect = 2.0e-61
Identity = 127/229 (55.46%), Postives = 152/229 (66.38%), Query Frame = 0
Query: 17 LLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHPTTKGLLNKPFPHYDEL 76
+LKKTFQAIV MRGP GSGF W D +KCII ERDVFD+WV HPT KG LNKPFPHYD L
Sbjct: 1 MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
Query: 77 SYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTMCSPRMNMSPNNMMASH 136
SYVFGK R TGA ++ F DI SNV+ NN E+G+++EF MCSPRMNMSP +M+
Sbjct: 61 SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
Query: 137 SGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIAEWPNKTINWEDAMV*K 196
S R+SD R G S QKRKR MQQ ET+DLI +
Sbjct: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICEL---------------------------Q 180
Query: 197 VMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAYYRILL 246
V+ ME IP+LTM + SKC+MI+ +KV LMRSFI+MS+ M AY ++LL
Sbjct: 181 VIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLL 202
BLAST of Chy3G058110 vs. ExPASy TrEMBL
Match:
A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)
HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 113/191 (59.16%), Postives = 143/191 (74.87%), Query Frame = 0
Query: 59 HPTTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFL 118
HP K LLNKPF HYD LSYVF KD+ TGA A+ F DI SN++ + VP ++G+++EF
Sbjct: 2 HPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFP 61
Query: 119 TMCSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKT 178
MCSPRMNMSP +MM SGR+SD R G S QKRK MQQ ETYDLI+ CM+AATDQL+T
Sbjct: 62 VMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRT 121
Query: 179 IAEWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKV 238
IAEWP K ++WED M +V+ +++I +LTM + SKCVM+V +KV LMRSFI+M + MK
Sbjct: 122 IAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKA 181
Query: 239 AYYRILLRDNP 250
AY R+LL +P
Sbjct: 182 AYCRVLLGGDP 192
BLAST of Chy3G058110 vs. ExPASy TrEMBL
Match:
A0A5D3BUJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00420 PE=4 SV=1)
HSP 1 Score: 227.3 bits (578), Expect = 7.3e-56
Identity = 127/243 (52.26%), Postives = 155/243 (63.79%), Query Frame = 0
Query: 1 MLGCGLTTIVIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHP 60
M+ C L T +IES IKLLKKTFQAI MRG P
Sbjct: 6 MVSCSLMTTIIESRIKLLKKTFQAIAEMRG-----------------------------P 65
Query: 61 TTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTM 120
K LLNK YD LS+VFGKDR TGA A+ F DI SNV N+ VP E+G+ +EF M
Sbjct: 66 VAKRLLNK----YDALSHVFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAM 125
Query: 121 CSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIA 180
C PRMNMSP +MM+ S ++SDAR S QKRKR MQQLETYDLI+ CM+ ATDQL+TI
Sbjct: 126 CRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIV 185
Query: 181 EWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAY 240
EWP K ++ ED M +V+ ESIP+LT+ + SKC+MIV +KV L RSFI+M + MK AY
Sbjct: 186 EWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAY 215
Query: 241 YRI 244
++
Sbjct: 246 CKV 215
BLAST of Chy3G058110 vs. ExPASy TrEMBL
Match:
A0A5A7VAC3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001190 PE=3 SV=1)
HSP 1 Score: 227.3 bits (578), Expect = 7.3e-56
Identity = 127/243 (52.26%), Postives = 155/243 (63.79%), Query Frame = 0
Query: 1 MLGCGLTTIVIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHP 60
M+ C L T +IES IKLLKKTFQAI MRG P
Sbjct: 119 MVSCSLMTTIIESRIKLLKKTFQAIAEMRG-----------------------------P 178
Query: 61 TTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTM 120
K LLNK YD LS+VFGKDR TGA A+ F DI SNV N+ VP E+G+ +EF M
Sbjct: 179 VAKRLLNK----YDALSHVFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAM 238
Query: 121 CSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIA 180
C PRMNMSP +MM+ S ++SDAR S QKRKR MQQLETYDLI+ CM+ ATDQL+TI
Sbjct: 239 CRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIV 298
Query: 181 EWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAY 240
EWP K ++ ED M +V+ ESIP+LT+ + SKC+MIV +KV L RSFI+M + MK AY
Sbjct: 299 EWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAY 328
Query: 241 YRI 244
++
Sbjct: 359 CKV 328
BLAST of Chy3G058110 vs. NCBI nr
Match:
KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 271 bits (694), Expect = 1.05e-88
Identity = 140/239 (58.58%), Postives = 164/239 (68.62%), Query Frame = 0
Query: 10 VIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHPTTKGLLNKP 69
VIE+ IKLLKKTFQAI MRGP GSGFGW D VKCII ERDVFD+WV HP KGLLNKP
Sbjct: 3 VIENRIKLLKKTFQAIAEMRGPAGSGFGWNDDVKCIITERDVFDHWVWTHPAAKGLLNKP 62
Query: 70 FPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTMCSPRMNMSP 129
FPHYD L VP ++ +++EF MCSPRMNMSP
Sbjct: 63 FPHYDALP-----------------------------VPTKDVIDMEFPAMCSPRMNMSP 122
Query: 130 NNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIAEWPNKTINW 189
NMM SGR++D R G +GQKRK MQQ ETYDLI CM+AATDQL+TIAEWP K ++W
Sbjct: 123 ENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSW 182
Query: 190 EDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAYYRILLRDN 248
EDAM +V+ +E+IP+LTM + SKCVM+V +KV LMRSFI+M + MK Y RILL N
Sbjct: 183 EDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGN 212
BLAST of Chy3G058110 vs. NCBI nr
Match:
KAA0055070.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 242 bits (617), Expect = 4.08e-77
Identity = 127/229 (55.46%), Postives = 152/229 (66.38%), Query Frame = 0
Query: 17 LLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHPTTKGLLNKPFPHYDEL 76
+LKKTFQAIV MRGP GSGF W D +KCII ERDVFD+WV HPT KG LNKPFPHYD L
Sbjct: 1 MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
Query: 77 SYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTMCSPRMNMSPNNMMASH 136
SYVFGK R TGA ++ F DI SNV+ NN E+G+++EF MCSPRMNMSP +M+
Sbjct: 61 SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
Query: 137 SGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIAEWPNKTINWEDAMV*K 196
S R+SD R G S QKRKR MQQ ET+DLI +
Sbjct: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICEL---------------------------Q 180
Query: 197 VMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAYYRILL 245
V+ ME IP+LTM + SKC+MI+ +KV LMRSFI+MS+ M AY ++LL
Sbjct: 181 VIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLL 202
BLAST of Chy3G058110 vs. NCBI nr
Match:
KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 229 bits (585), Expect = 1.84e-72
Identity = 113/191 (59.16%), Postives = 143/191 (74.87%), Query Frame = 0
Query: 59 HPTTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFL 118
HP K LLNKPF HYD LSYVF KD+ TGA A+ F DI SN++ + VP ++G+++EF
Sbjct: 2 HPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFP 61
Query: 119 TMCSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKT 178
MCSPRMNMSP +MM SGR+SD R G S QKRK MQQ ETYDLI+ CM+AATDQL+T
Sbjct: 62 VMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRT 121
Query: 179 IAEWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKV 238
IAEWP K ++WED M +V+ +++I +LTM + SKCVM+V +KV LMRSFI+M + MK
Sbjct: 122 IAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKA 181
Query: 239 AYYRILLRDNP 249
AY R+LL +P
Sbjct: 182 AYCRVLLGGDP 192
BLAST of Chy3G058110 vs. NCBI nr
Match:
TYK02844.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 224 bits (572), Expect = 4.02e-70
Identity = 127/243 (52.26%), Postives = 155/243 (63.79%), Query Frame = 0
Query: 1 MLGCGLTTIVIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHP 60
M+ C L T +IES IKLLKKTFQAI MRGP
Sbjct: 6 MVSCSLMTTIIESRIKLLKKTFQAIAEMRGPVA--------------------------- 65
Query: 61 TTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTM 120
K LLNK YD LS+VFGKDR TGA A+ F DI SNV N+ VP E+G+ +EF M
Sbjct: 66 --KRLLNK----YDALSHVFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAM 125
Query: 121 CSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIA 180
C PRMNMSP +MM+ S ++SDAR S QKRKR MQQLETYDLI+ CM+ ATDQL+TI
Sbjct: 126 CRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIV 185
Query: 181 EWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAY 240
EWP K ++ ED M +V+ ESIP+LT+ + SKC+MIV +KV L RSFI+M + MK AY
Sbjct: 186 EWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAY 215
Query: 241 YRI 243
++
Sbjct: 246 CKV 215
BLAST of Chy3G058110 vs. NCBI nr
Match:
KAA0064184.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 224 bits (572), Expect = 1.34e-68
Identity = 127/243 (52.26%), Postives = 155/243 (63.79%), Query Frame = 0
Query: 1 MLGCGLTTIVIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHP 60
M+ C L T +IES IKLLKKTFQAI MRGP
Sbjct: 119 MVSCSLMTTIIESRIKLLKKTFQAIAEMRGPVA--------------------------- 178
Query: 61 TTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTM 120
K LLNK YD LS+VFGKDR TGA A+ F DI SNV N+ VP E+G+ +EF M
Sbjct: 179 --KRLLNK----YDALSHVFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAM 238
Query: 121 CSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIA 180
C PRMNMSP +MM+ S ++SDAR S QKRKR MQQLETYDLI+ CM+ ATDQL+TI
Sbjct: 239 CRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIV 298
Query: 181 EWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAY 240
EWP K ++ ED M +V+ ESIP+LT+ + SKC+MIV +KV L RSFI+M + MK AY
Sbjct: 299 EWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAY 328
Query: 241 YRI 243
++
Sbjct: 359 CKV 328
BLAST of Chy3G058110 vs. TAIR 10
Match:
AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 45.1 bits (105), Expect = 9.9e-05
Identity = 16/54 (29.63%), Postives = 29/54 (53.70%), Query Frame = 0
Query: 34 SGFGWKDGVKCIIAERDVFDNWVGKHPTTKGLLNKPFPHYDELSYVFGKDRTTG 88
+GF W +IA+ D+++ ++ HP + K P Y L ++FGK+ + G
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDG 452
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3B9T0 | 3.1e-70 | 58.58 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DLC6 | 2.0e-61 | 55.46 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TYU4 | 1.3e-57 | 59.16 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BUJ4 | 7.3e-56 | 52.26 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VAC3 | 7.3e-56 | 52.26 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0033551.1 | 1.05e-88 | 58.58 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon p... | [more] |
KAA0055070.1 | 4.08e-77 | 55.46 | retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon p... | [more] |
KAA0048148.1 | 1.84e-72 | 59.16 | retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p... | [more] |
TYK02844.1 | 4.02e-70 | 52.26 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0064184.1 | 1.34e-68 | 52.26 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT2G24960.2 | 9.9e-05 | 29.63 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |