Chy3G058110 (gene) Cucumber (hystrix) v1

Overview
NameChy3G058110
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRetrotransposon protein
LocationchrH03: 11516053 .. 11516881 (-)
RNA-Seq ExpressionChy3G058110
SyntenyChy3G058110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGGCTGCGGGTTGACAACCATCGTCATCGAAAGCTAAATAAAATTGTTGAAAAAGACGTTTCAGGCCATTGTTGTGATGAGGGGCCCAACAGGCAGTGGCTTCGGTTGGAAAGATGGCGTCAAGTGCATCATCGCCGAGAGGGACGTGTTCGACAATTGGGTCGGGGTAAAATTCTAAACTTAATGAAATGACTAACGGGGTATACTGGATTACTAAACACTTTGGTTTTTTTTTAATTTGTCAGAAGCATCCTACAACAAAAGGACTCCTGAACAAGCCCTTCCCACATTACGACGAGTTGTCGTATGTGTTTGGGAAAGATCGCACGACTGGTGCCAGTGCACAGATGTTCGTGGACATTGGGTCCAACGTGACAGGACCCAACAATGGTGTCCCCGTAGAGAATGGCCTTGAGATCGAGTTTCTAACTATGTGCAGCCCGAGAATGAACATGTCGCCAAACAACATGATGGCCAGTCACTCTGGTCGAACAAGCGATGCTAGGGCAGGTTTTAGTGGACAGAAAAGGAAACGCGACATGCAGCAATTGGAGACTTACGATCTGATCCAGAATTGCATGGACGCTGCAACTGATCAACTTAAGACCATTGCAGAATGGCCTAATAAAACGATCAACTGGGAGGACGCCATGGTGTAGAAGGTCATGACGCATATGGAGTCCATCCCAAGCCTTACTATGGAGGACATCAGTAAATGTGTGATGATAGTGACGGAGAAGGTGTGGCTAATGAGAAGCTTCATTAGGATGTCAAATCCGATGAAGGTCGCTTACTACAGGATCCTCCTCCGCGATAACCCATGA

mRNA sequence

ATGCTCGGCTGCGGGTTGACAACCATCGTCATCGAAAGCTAAATAAAATTGTTGAAAAAGACGTTTCAGGCCATTGTTGTGATGAGGGGCCCAACAGGCAGTGGCTTCGGTTGGAAAGATGGCGTCAAGTGCATCATCGCCGAGAGGGACGTGTTCGACAATTGGGTCGGGAAGCATCCTACAACAAAAGGACTCCTGAACAAGCCCTTCCCACATTACGACGAGTTGTCGTATGTGTTTGGGAAAGATCGCACGACTGGTGCCAGTGCACAGATGTTCGTGGACATTGGGTCCAACGTGACAGGACCCAACAATGGTGTCCCCGTAGAGAATGGCCTTGAGATCGAGTTTCTAACTATGTGCAGCCCGAGAATGAACATGTCGCCAAACAACATGATGGCCAGTCACTCTGGTCGAACAAGCGATGCTAGGGCAGGTTTTAGTGGACAGAAAAGGAAACGCGACATGCAGCAATTGGAGACTTACGATCTGATCCAGAATTGCATGGACGCTGCAACTGATCAACTTAAGACCATTGCAGAATGGCCTAATAAAACGATCAACTGGGAGGACGCCATGGTGTAGAAGGTCATGACGCATATGGAGTCCATCCCAAGCCTTACTATGGAGGACATCAGTAAATGTGTGATGATAGTGACGGAGAAGGTGTGGCTAATGAGAAGCTTCATTAGGATGTCAAATCCGATGAAGGTCGCTTACTACAGGATCCTCCTCCGCGATAACCCATGA

Coding sequence (CDS)

ATGCTCGGCTGCGGGTTGACAACCATCGTCATCGAAAGCTAAATAAAATTGTTGAAAAAGACGTTTCAGGCCATTGTTGTGATGAGGGGCCCAACAGGCAGTGGCTTCGGTTGGAAAGATGGCGTCAAGTGCATCATCGCCGAGAGGGACGTGTTCGACAATTGGGTCGGGAAGCATCCTACAACAAAAGGACTCCTGAACAAGCCCTTCCCACATTACGACGAGTTGTCGTATGTGTTTGGGAAAGATCGCACGACTGGTGCCAGTGCACAGATGTTCGTGGACATTGGGTCCAACGTGACAGGACCCAACAATGGTGTCCCCGTAGAGAATGGCCTTGAGATCGAGTTTCTAACTATGTGCAGCCCGAGAATGAACATGTCGCCAAACAACATGATGGCCAGTCACTCTGGTCGAACAAGCGATGCTAGGGCAGGTTTTAGTGGACAGAAAAGGAAACGCGACATGCAGCAATTGGAGACTTACGATCTGATCCAGAATTGCATGGACGCTGCAACTGATCAACTTAAGACCATTGCAGAATGGCCTAATAAAACGATCAACTGGGAGGACGCCATGGTGTAGAAGGTCATGACGCATATGGAGTCCATCCCAAGCCTTACTATGGAGGACATCAGTAAATGTGTGATGATAGTGACGGAGAAGGTGTGGCTAATGAGAAGCTTCATTAGGATGTCAAATCCGATGAAGGTCGCTTACTACAGGATCCTCCTCCGCGATAACCCATGA

Protein sequence

MLGCGLTTIVIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHPTTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTMCSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIAEWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAYYRILLRDNP*
Homology
[Close]
BLAST of Chy3G058110 vs. ExPASy TrEMBL
Match: A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 3.1e-70
Identity = 140/239 (58.58%), Postives = 164/239 (68.62%), Query Frame = 0 

Query: 10  VIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHPTTKGLLNKP 69
           VIE+ IKLLKKTFQAI  MRGP GSGFGW D VKCII ERDVFD+WV  HP  KGLLNKP
Sbjct: 3   VIENRIKLLKKTFQAIAEMRGPAGSGFGWNDDVKCIITERDVFDHWVWTHPAAKGLLNKP 62

Query: 70  FPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTMCSPRMNMSP 129
           FPHYD L                              VP ++ +++EF  MCSPRMNMSP
Sbjct: 63  FPHYDALP-----------------------------VPTKDVIDMEFPAMCSPRMNMSP 122

Query: 130 NNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIAEWPNKTINW 189
            NMM   SGR++D R G +GQKRK  MQQ ETYDLI  CM+AATDQL+TIAEWP K ++W
Sbjct: 123 ENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSW 182

Query: 190 EDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAYYRILLRDN 249
           EDAM  +V+  +E+IP+LTM + SKCVM+V +KV LMRSFI+M + MK  Y RILL  N
Sbjct: 183 EDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGN 212

[Close]
BLAST of Chy3G058110 vs. ExPASy TrEMBL
Match: A0A5D3DLC6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002060 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.0e-61
Identity = 127/229 (55.46%), Postives = 152/229 (66.38%), Query Frame = 0 

Query: 17  LLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHPTTKGLLNKPFPHYDEL 76
           +LKKTFQAIV MRGP GSGF W D +KCII ERDVFD+WV  HPT KG LNKPFPHYD L
Sbjct: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60

Query: 77  SYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTMCSPRMNMSPNNMMASH 136
           SYVFGK R TGA ++ F DI SNV+  NN    E+G+++EF  MCSPRMNMSP +M+   
Sbjct: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120

Query: 137 SGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIAEWPNKTINWEDAMV*K 196
           S R+SD R G S QKRKR MQQ ET+DLI                              +
Sbjct: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICEL---------------------------Q 180

Query: 197 VMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAYYRILL 246
           V+  ME IP+LTM + SKC+MI+ +KV LMRSFI+MS+ M  AY ++LL
Sbjct: 181 VIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLL 202

[Close]
BLAST of Chy3G058110 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 113/191 (59.16%), Postives = 143/191 (74.87%), Query Frame = 0 

Query: 59  HPTTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFL 118
           HP  K LLNKPF HYD LSYVF KD+ TGA A+ F DI SN++   + VP ++G+++EF 
Sbjct: 2   HPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFP 61

Query: 119 TMCSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKT 178
            MCSPRMNMSP +MM   SGR+SD R G S QKRK  MQQ ETYDLI+ CM+AATDQL+T
Sbjct: 62  VMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRT 121

Query: 179 IAEWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKV 238
           IAEWP K ++WED M  +V+  +++I +LTM + SKCVM+V +KV LMRSFI+M + MK 
Sbjct: 122 IAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKA 181

Query: 239 AYYRILLRDNP 250
           AY R+LL  +P
Sbjct: 182 AYCRVLLGGDP 192

[Close]
BLAST of Chy3G058110 vs. ExPASy TrEMBL
Match: A0A5D3BUJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00420 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 7.3e-56
Identity = 127/243 (52.26%), Postives = 155/243 (63.79%), Query Frame = 0 

Query: 1   MLGCGLTTIVIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHP 60
           M+ C L T +IES IKLLKKTFQAI  MRG                             P
Sbjct: 6   MVSCSLMTTIIESRIKLLKKTFQAIAEMRG-----------------------------P 65

Query: 61  TTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTM 120
             K LLNK    YD LS+VFGKDR TGA A+ F DI SNV   N+ VP E+G+ +EF  M
Sbjct: 66  VAKRLLNK----YDALSHVFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAM 125

Query: 121 CSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIA 180
           C PRMNMSP +MM+  S ++SDAR   S QKRKR MQQLETYDLI+ CM+ ATDQL+TI 
Sbjct: 126 CRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIV 185

Query: 181 EWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAY 240
           EWP K ++ ED M  +V+   ESIP+LT+ + SKC+MIV +KV L RSFI+M + MK AY
Sbjct: 186 EWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAY 215

Query: 241 YRI 244
            ++
Sbjct: 246 CKV 215

[Close]
BLAST of Chy3G058110 vs. ExPASy TrEMBL
Match: A0A5A7VAC3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001190 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 7.3e-56
Identity = 127/243 (52.26%), Postives = 155/243 (63.79%), Query Frame = 0 

Query: 1   MLGCGLTTIVIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHP 60
           M+ C L T +IES IKLLKKTFQAI  MRG                             P
Sbjct: 119 MVSCSLMTTIIESRIKLLKKTFQAIAEMRG-----------------------------P 178

Query: 61  TTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTM 120
             K LLNK    YD LS+VFGKDR TGA A+ F DI SNV   N+ VP E+G+ +EF  M
Sbjct: 179 VAKRLLNK----YDALSHVFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAM 238

Query: 121 CSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIA 180
           C PRMNMSP +MM+  S ++SDAR   S QKRKR MQQLETYDLI+ CM+ ATDQL+TI 
Sbjct: 239 CRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIV 298

Query: 181 EWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAY 240
           EWP K ++ ED M  +V+   ESIP+LT+ + SKC+MIV +KV L RSFI+M + MK AY
Sbjct: 299 EWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAY 328

Query: 241 YRI 244
            ++
Sbjct: 359 CKV 328

[Close]
BLAST of Chy3G058110 vs. NCBI nr
Match: KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 271 bits (694), Expect = 1.05e-88
Identity = 140/239 (58.58%), Postives = 164/239 (68.62%), Query Frame = 0 

Query: 10  VIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHPTTKGLLNKP 69
           VIE+ IKLLKKTFQAI  MRGP GSGFGW D VKCII ERDVFD+WV  HP  KGLLNKP
Sbjct: 3   VIENRIKLLKKTFQAIAEMRGPAGSGFGWNDDVKCIITERDVFDHWVWTHPAAKGLLNKP 62

Query: 70  FPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTMCSPRMNMSP 129
           FPHYD L                              VP ++ +++EF  MCSPRMNMSP
Sbjct: 63  FPHYDALP-----------------------------VPTKDVIDMEFPAMCSPRMNMSP 122

Query: 130 NNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIAEWPNKTINW 189
            NMM   SGR++D R G +GQKRK  MQQ ETYDLI  CM+AATDQL+TIAEWP K ++W
Sbjct: 123 ENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAEWPEKFMSW 182

Query: 190 EDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAYYRILLRDN 248
           EDAM  +V+  +E+IP+LTM + SKCVM+V +KV LMRSFI+M + MK  Y RILL  N
Sbjct: 183 EDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYGRILLGGN 212

[Close]
BLAST of Chy3G058110 vs. NCBI nr
Match: KAA0055070.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 242 bits (617), Expect = 4.08e-77
Identity = 127/229 (55.46%), Postives = 152/229 (66.38%), Query Frame = 0 

Query: 17  LLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHPTTKGLLNKPFPHYDEL 76
           +LKKTFQAIV MRGP GSGF W D +KCII ERDVFD+WV  HPT KG LNKPFPHYD L
Sbjct: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60

Query: 77  SYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTMCSPRMNMSPNNMMASH 136
           SYVFGK R TGA ++ F DI SNV+  NN    E+G+++EF  MCSPRMNMSP +M+   
Sbjct: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120

Query: 137 SGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIAEWPNKTINWEDAMV*K 196
           S R+SD R G S QKRKR MQQ ET+DLI                              +
Sbjct: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICEL---------------------------Q 180

Query: 197 VMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAYYRILL 245
           V+  ME IP+LTM + SKC+MI+ +KV LMRSFI+MS+ M  AY ++LL
Sbjct: 181 VIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSDSMMAAYCKVLL 202

[Close]
BLAST of Chy3G058110 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 229 bits (585), Expect = 1.84e-72
Identity = 113/191 (59.16%), Postives = 143/191 (74.87%), Query Frame = 0 

Query: 59  HPTTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFL 118
           HP  K LLNKPF HYD LSYVF KD+ TGA A+ F DI SN++   + VP ++G+++EF 
Sbjct: 2   HPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFP 61

Query: 119 TMCSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKT 178
            MCSPRMNMSP +MM   SGR+SD R G S QKRK  MQQ ETYDLI+ CM+AATDQL+T
Sbjct: 62  VMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRT 121

Query: 179 IAEWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKV 238
           IAEWP K ++WED M  +V+  +++I +LTM + SKCVM+V +KV LMRSFI+M + MK 
Sbjct: 122 IAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKA 181

Query: 239 AYYRILLRDNP 249
           AY R+LL  +P
Sbjct: 182 AYCRVLLGGDP 192

[Close]
BLAST of Chy3G058110 vs. NCBI nr
Match: TYK02844.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (572), Expect = 4.02e-70
Identity = 127/243 (52.26%), Postives = 155/243 (63.79%), Query Frame = 0 

Query: 1   MLGCGLTTIVIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHP 60
           M+ C L T +IES IKLLKKTFQAI  MRGP                             
Sbjct: 6   MVSCSLMTTIIESRIKLLKKTFQAIAEMRGPVA--------------------------- 65

Query: 61  TTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTM 120
             K LLNK    YD LS+VFGKDR TGA A+ F DI SNV   N+ VP E+G+ +EF  M
Sbjct: 66  --KRLLNK----YDALSHVFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAM 125

Query: 121 CSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIA 180
           C PRMNMSP +MM+  S ++SDAR   S QKRKR MQQLETYDLI+ CM+ ATDQL+TI 
Sbjct: 126 CRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIV 185

Query: 181 EWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAY 240
           EWP K ++ ED M  +V+   ESIP+LT+ + SKC+MIV +KV L RSFI+M + MK AY
Sbjct: 186 EWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAY 215

Query: 241 YRI 243
            ++
Sbjct: 246 CKV 215

[Close]
BLAST of Chy3G058110 vs. NCBI nr
Match: KAA0064184.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (572), Expect = 1.34e-68
Identity = 127/243 (52.26%), Postives = 155/243 (63.79%), Query Frame = 0 

Query: 1   MLGCGLTTIVIES*IKLLKKTFQAIVVMRGPTGSGFGWKDGVKCIIAERDVFDNWVGKHP 60
           M+ C L T +IES IKLLKKTFQAI  MRGP                             
Sbjct: 119 MVSCSLMTTIIESRIKLLKKTFQAIAEMRGPVA--------------------------- 178

Query: 61  TTKGLLNKPFPHYDELSYVFGKDRTTGASAQMFVDIGSNVTGPNNGVPVENGLEIEFLTM 120
             K LLNK    YD LS+VFGKDR TGA A+ F DI SNV   N+ VP E+G+ +EF  M
Sbjct: 179 --KRLLNK----YDALSHVFGKDRATGACAETFADIDSNVQTDNDSVPAEDGINMEFPAM 238

Query: 121 CSPRMNMSPNNMMASHSGRTSDARAGFSGQKRKRDMQQLETYDLIQNCMDAATDQLKTIA 180
           C PRMNMSP +MM+  S ++SDAR   S QKRKR MQQLETYDLI+ CM+ ATDQL+TI 
Sbjct: 239 CRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIV 298

Query: 181 EWPNKTINWEDAMV*KVMTHMESIPSLTMEDISKCVMIVTEKVWLMRSFIRMSNPMKVAY 240
           EWP K ++ ED M  +V+   ESIP+LT+ + SKC+MIV +KV L RSFI+M + MK AY
Sbjct: 299 EWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAY 328

Query: 241 YRI 243
            ++
Sbjct: 359 CKV 328

[Close]
BLAST of Chy3G058110 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 9.9e-05
Identity = 16/54 (29.63%), Postives = 29/54 (53.70%), Query Frame = 0 

Query: 34  SGFGWKDGVKCIIAERDVFDNWVGKHPTTKGLLNKPFPHYDELSYVFGKDRTTG 88
           +GF W      +IA+ D+++ ++  HP  +    K  P Y  L ++FGK+ + G
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDG 452

The following BLAST results are available for this feature:
BLAST of Chy3G058110 vs.
Match NameE-valueIdentityDescription
BLAST of Chy3G058110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3B9T03.1e-7058.58Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DLC62.0e-6155.46Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TYU41.3e-5759.16Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BUJ47.3e-5652.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VAC37.3e-5652.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Chy3G058110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0033551.11.05e-8858.58retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon p... [more]
KAA0055070.14.08e-7755.46retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon p... [more]
KAA0048148.11.84e-7259.16retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p... [more]
TYK02844.14.02e-7052.26retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0064184.11.34e-6852.26retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Chy3G058110 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G24960.29.9e-0529.63unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 12..235
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 12..235

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy3G058110.1Chy3G058110.1mRNA