Chy2G038540 (gene) Cucumber (hystrix) v1

Overview
NameChy2G038540
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTransposase
LocationchrH02: 14319655 .. 14321018 (-)
RNA-Seq ExpressionChy2G038540
SyntenyChy2G038540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGTCACAATCTAGCAGTGAGGATGAAAGACAAATGATTCCTGAAGTAAGAAACAAATCATTCGTGCCACGTGGCTCAATGAATATGTCAGAGTTGGCATCAGTAAGAAATTCTGGACAACGGTTGCCCATTCAATTTAATGAACACGGGCAACCTGTAGGAGCCATATCTAAGAAAATGCAAAGTTACATTGGTGTGTGCGTTTGGCAACAGATTCCTATCACATACAAATCTTGGAAACAAGTTCCGAATGAGTTGAAAGATAAGATCTATGATTGTATAACCGTATGAATTCTATAATTACATTTTTCATACAATGTAGTTTGATTTCTCTAAGTATAAATATGTTTTTCTTTTTTCTTGTGTAGATGTCATTTGAGTTACATCCTAATGCTAAACACTCTATCCTAATGTCTGCATCAAGAAAGTATCAAACTTTCAAAACCACGTTGACTTAGAAGTATACTTCCGTTTAAGGATCAACATCATGTTTGCAGTTTCCTCCTAAAATTTATTCTCATATTAATCAAGAAGATTGGAACTCCTTTATGGACGCTAGACTAACTGAAGAATGGGAGGTAAATAAATTTAATTACATGTTAACTTTAATATTGTTTTGGTATGTAACTACAAACTAATGCTTTGTATAGGATTATAGTCGTATTCAAAGGGAAAGAAGATCAAAATGCGTATACAATCATCACATTGCTCGTAAGGGATATGCGAATCTTGCCGCCAAATTAGTTAATCTTTCTAATTGAATAAGATAATTTATCTTAATATGTTTATGCCAATTAAATATATATCTTTGGTTGCTGAATATAACGCGTGATGTTTCCTATCGTTCAACTCTTTGGAAAGAAGCACGGAAAGGAAAGAACAATGATTATTTTGATGATGCTACTCGAGATTGTGTCTCTCATATCGTAAGTTTACTTACGATTTACATATATATAATATATAATCTTTTGTTAACTTAGCTAATGATGAACATACTTGTATTGTTCTATAGGATGCATTAGCCGCAACACATAAAGATGAGGACATATTGACTGAAGCATTGGGCTCCAAGGAGCACGGTGGACGTGTACGTGGCCTGGGTGGTTTTGTCTCTCAATCACAATATTTCAAAATAGTGAAAGGGAAAGAGAAAATGATAAGTTCTGAAGTTGAAATATGTCATAAAGAAGATGACTCAAAAAGCAAAAGTTACAAGAAGAGTCATAATCACTCGAGATCGTCCATCGGAAGTGTTAACATAGATCTCAATGCTGATGAGGATTTGGGCAACACACCTAGCAAGGAAGAAGTGAAGGTAATTAACTTTGTTGTCACTTTTAAAATTTTAATGTTTATAG

mRNA sequence

ATGGAGGAGTCACAATCTAGCAGTGAGGATGAAAGACAAATGATTCCTGAAGTAAGAAACAAATCATTCGTGCCACGTGGCTCAATGAATATGTCAGAGTTGGCATCAGATTATAGTCGTATTCAAAGGGAAAGAAGATCAAAATGCGTATACAATCATCACATTGCTCGTAAGGGATATGCGAATCTTGCCGCCAAATTAGCGTGATGTTTCCTATCGTTCAACTCTTTGGAAAGAAGCACGGAAAGGAAAGAACAATGATTATTTTGATGATGCTACTCGAGATTGTGTCTCTCATATCGATGCATTAGCCGCAACACATAAAGATGAGGACATATTGACTGAAGCATTGGGCTCCAAGGAGCACGGTGGACGTGTACGTGGCCTGGGTGGTTTTGTCTCTCAATCACAATATTTCAAAATAGTGAAAGGGAAAGAGAAAATGATAAGTTCTGAAGTTGAAATATGTCATAAAGAAGATGACTCAAAAAGCAAAAGTTACAAGAAGAGTCATAATCACTCGAGATCGTCCATCGGAAGTGTTAACATAGATCTCAATGCTGATGAGGATTTGGGCAACACACCTAGCAAGGAAGAAGTGAAGGTAATTAACTTTGTTGTCACTTTTAAAATTTTAATGTTTATAG

Coding sequence (CDS)

ATGGAGGAGTCACAATCTAGCAGTGAGGATGAAAGACAAATGATTCCTGAAGTAAGAAACAAATCATTCGTGCCACGTGGCTCAATGAATATGTCAGAGTTGGCATCAGATTATAGTCGTATTCAAAGGGAAAGAAGATCAAAATGCGTATACAATCATCACATTGCTCGTAAGGGATATGCGAATCTTGCCGCCAAATTAGCGTGATGTTTCCTATCGTTCAACTCTTTGGAAAGAAGCACGGAAAGGAAAGAACAATGATTATTTTGATGATGCTACTCGAGATTGTGTCTCTCATATCGATGCATTAGCCGCAACACATAAAGATGAGGACATATTGACTGAAGCATTGGGCTCCAAGGAGCACGGTGGACGTGTACGTGGCCTGGGTGGTTTTGTCTCTCAATCACAATATTTCAAAATAGTGAAAGGGAAAGAGAAAATGATAAGTTCTGAAGTTGAAATATGTCATAAAGAAGATGACTCAAAAAGCAAAAGTTACAAGAAGAGTCATAATCACTCGAGATCGTCCATCGGAAGTGTTAACATAGATCTCAATGCTGATGAGGATTTGGGCAACACACCTAGCAAGGAAGAAGTGAAGGTAATTAACTTTGTTGTCACTTTTAAAATTTTAATGTTTATAG

Protein sequence

MEESQSSSEDERQMIPEVRNKSFVPRGSMNMSELASDYSRIQRERRSKCVYNHHIARKGYANLAAKLA*CFLSFNSLERSTERKEQ*LF**CYSRLCLSYRCISRNT*R*GHID*SIGLQGARWTCTWPGWFCLSITIFQNSERERENDKF*S*NMS*RR*LKKQKLQEES*SLEIVHRKC*HRSQC**GFGQHT*QGRSEGN*LCCHF*NFNVYX
Homology
BLAST of Chy2G038540 vs. ExPASy TrEMBL
Match: A0A0A0K8F2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G157500 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.7e-19
Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 0

Query: 1  MEESQSSSEDERQMIPEVRNKSFVPRGSMNMSELASDYSRIQRERRSKCVYNHHIARKGY 60
          ME S  SSEDERQMI EVRN+SFVPRG   MS+LASDYSRIQRERRSKCVYNHH+ARKGY
Sbjct: 1  MENSHISSEDERQMILEVRNRSFVPRGPTTMSKLASDYSRIQRERRSKCVYNHHVARKGY 60

Query: 61 ANLAAKL-A*CFLSFNS 77
           NL  ++   C +S+ S
Sbjct: 61 VNLVNEINMTCDVSYRS 77

BLAST of Chy2G038540 vs. ExPASy TrEMBL
Match: A0A5A7VDV7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001540 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-07
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 31  MSELASDYSRIQRERRSKCVYNHHIARKGYANLAAKLA*CFLSFNSLERSTERKE 86
           +SE   +YSRIQRERRSKCVYNHH++RKGYANLA KL    ++ +   RST  KE
Sbjct: 224 LSEEWENYSRIQRERRSKCVYNHHMSRKGYANLADKLK---ITHDVSSRSTLWKE 275

BLAST of Chy2G038540 vs. ExPASy TrEMBL
Match: A0A5A7TFM9 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G001090 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.3e-07
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0

Query: 31  MSELASDYSRIQRERRSKCVYNHHIARKGYANLAAKL 68
           +SE   DYSRIQRERRSKCVYNHH++RKGYANLA +L
Sbjct: 241 LSEEWEDYSRIQRERRSKCVYNHHMSRKGYANLAGEL 277

BLAST of Chy2G038540 vs. ExPASy TrEMBL
Match: A0A5D3DZI0 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00080 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.3e-07
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0

Query: 31  MSELASDYSRIQRERRSKCVYNHHIARKGYANLAAKL 68
           +SE   DYSRIQRERRSKCVYNHH++RKGYANLA +L
Sbjct: 232 LSEEWEDYSRIQRERRSKCVYNHHMSRKGYANLAGEL 268

BLAST of Chy2G038540 vs. ExPASy TrEMBL
Match: A0A5A7V150 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G001320 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 21  KSFVPRGSMNMSELASDYSRIQRERRSKCVYNHHIARKGYANLAAKL 68
           ++F    +  +SE   DYSRIQRERRSKCVYNHH++RKGYANLA +L
Sbjct: 108 RTFKTTLTQKLSEEWEDYSRIQRERRSKCVYNHHMSRKGYANLADEL 154

BLAST of Chy2G038540 vs. NCBI nr
Match: KGN44061.1 (hypothetical protein Csa_015448 [Cucumis sativus])

HSP 1 Score: 105 bits (263), Expect = 3.66e-24
Identity = 59/86 (68.60%), Postives = 66/86 (76.74%), Query Frame = 0

Query: 1  MEESQSSSEDERQMIPEVRNKSFVPRGSMNMSELASDYSRIQRERRSKCVYNHHIARKGY 60
          ME S  SSEDERQMI EVRN+SFVPRG   MS+LASDYSRIQRERRSKCVYNHH+ARKGY
Sbjct: 1  MENSHISSEDERQMILEVRNRSFVPRGPTTMSKLASDYSRIQRERRSKCVYNHHVARKGY 60

Query: 61 ANLAAKL-A*CFLSFNSLERSTERKE 85
           NL  ++   C +S+    RST  KE
Sbjct: 61 VNLVNEINMTCDVSY----RSTLWKE 82

BLAST of Chy2G038540 vs. NCBI nr
Match: KAA0038895.1 (uncharacterized protein E6C27_scaffold1170G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 5.92e-10
Identity = 51/128 (39.84%), Postives = 63/128 (49.22%), Query Frame = 0

Query: 21  KSFVPRGSMNMSELASDYSRIQRERRSKCVYNHHIARKGYANLAAKLA*CFLSFNSLERS 80
           +SFV      +SE   DYSRIQRERRSKCVYNHH++RKGYANLA +L       + L  +
Sbjct: 59  ESFV---DARLSEEWEDYSRIQRERRSKCVYNHHMSRKGYANLADEL-------DELV-A 118

Query: 81  TERKEQ*LF**CYSRLCLSYRCISRNT*R*GHID*SIGLQGARWTCTWPGWFCLSITIFQ 140
           T + E  L                           +  L   +  C     F LSITIFQ
Sbjct: 119 TNKNEDIL---------------------------TDALGSKKHGC-----FRLSITIFQ 143

Query: 141 NSEREREN 148
           +S+RE EN
Sbjct: 179 HSKREGEN 143

BLAST of Chy2G038540 vs. NCBI nr
Match: KAA0065464.1 (uncharacterized protein E6C27_scaffold17G001540 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.94e-08
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 21  KSFVPRGSMNMSELASDYSRIQRERRSKCVYNHHIARKGYANLAAKLA*CFLSFNSLERS 80
           +SFV      +SE   +YSRIQRERRSKCVYNHH++RKGYANLA KL    ++ +   RS
Sbjct: 217 ESFV---DARLSEEWENYSRIQRERRSKCVYNHHMSRKGYANLADKLK---ITHDVSSRS 275

Query: 81  TERKE 85
           T  KE
Sbjct: 277 TLWKE 275

BLAST of Chy2G038540 vs. NCBI nr
Match: KAA0048450.1 (uncharacterized protein E6C27_scaffold61G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 4.22e-08
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 0

Query: 21  KSFVPRGSMNMSELASDYSRIQRERRSKCVYNHHIARKGYANLAAKLA*CFLSFNSLERS 80
           KSFV      +SE   DYSRIQRERRSKCVYNHH++RKGYANL  +L    ++ +   RS
Sbjct: 153 KSFV---DAKLSEEWEDYSRIQRERRSKCVYNHHMSRKGYANLVDELK---ITHDVSYRS 211

Query: 81  TERKE 85
           T  KE
Sbjct: 213 TLWKE 211

BLAST of Chy2G038540 vs. NCBI nr
Match: TYK28247.1 (uncharacterized protein E5676_scaffold600G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 4.39e-08
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 0

Query: 21  KSFVPRGSMNMSELASDYSRIQRERRSKCVYNHHIARKGYANLAAKLA*CFLSFNSLERS 80
           KSFV      +SE   DYSRIQRERRSKCVYNHH++RKGYANL  +L    ++ +   RS
Sbjct: 239 KSFV---DAKLSEEWEDYSRIQRERRSKCVYNHHMSRKGYANLVDELK---ITHDVSYRS 297

Query: 81  TERKE 85
           T  KE
Sbjct: 299 TLWKE 297

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K8F24.7e-1971.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G157500 PE=4 SV=1[more]
A0A5A7VDV74.2e-0761.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TFM99.3e-0778.38DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DZI09.3e-0778.38DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7V1501.2e-0663.83ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
Match NameE-valueIdentityDescription
KGN44061.13.66e-2468.60hypothetical protein Csa_015448 [Cucumis sativus][more]
KAA0038895.15.92e-1039.84uncharacterized protein E6C27_scaffold1170G00630 [Cucumis melo var. makuwa][more]
KAA0065464.12.94e-0856.92uncharacterized protein E6C27_scaffold17G001540 [Cucumis melo var. makuwa][more]
KAA0048450.14.22e-0856.92uncharacterized protein E6C27_scaffold61G00450 [Cucumis melo var. makuwa][more]
TYK28247.14.39e-0856.92uncharacterized protein E5676_scaffold600G00470 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy2G038540.1Chy2G038540.1mRNA