Chy1G013160 (gene) Cucumber (hystrix) v1

Overview


Name	Chy1G013160
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Transposase
Location	chrH01: 16890532 .. 16891393 (-)
RNA-Seq Expression	Chy1G013160
Synteny	Chy1G013160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATACTCACATTGAAGATGTTGTTTATTGTAGTTTTCATTGGATGTTGCATGTCATCGACCTTCGAGAAAATTGTGTTTATGTTTTGGACTCTCTTCGAAGTAAAGTTAATGAAGACATTCATGGAGTCATAAATGTGTAAGTGTATTCACTTTATTACTTCTTGTTTCACTTTATTATCTTCTAATGTTTACAAATATATAGAGGATTGAAAGCATGGAAAGCTAAACATGATCTATAACACTATCGGTCAACTCCAAAATGGAAACCTGTATAGGTAATTTGCATTGACACATAATTATTTTTGATCAAACATAAGAACAATTTGTATTCAATTTATATACATGCAGTGTCCTAGTCAATTGGATTCTGTAGGGTGTGGGTACTATGTCCAAAAGTACATACATGAAATAGTGCATAATTCTAGTACTCCCATTACTACCCTTGTAAGTTTCTACCTTCACTTTTTATATGTTACAATTCAATAAATGATCTAAACTCATTCTTTCCATAATTTTCTTTCTTTATGTAGTTCAATACAAAAAATGCTTATAGACAAGAGGTGATTGATGAGATTCAAACAAAATGGACAAGTTTTGTTGACCGATTTGTGTAAGGTTTTACATTTTTTTTTTGTAATATATAAGTTAGTAGTTTAATTTAGTTTGTGGGTTGTTATACATACTTTAGTTTTGGATTTTTCTGCTTGTAGCTTTCTACATGTAGTTTTTGGAGAGATGAGTGGTCCTATAGTTTTTGAAAGGGTGTGGGGTCTCGTAGTAATTGATGTTTATTAGATAGCGTGTACATATAATTTAGTTAGTGGAGGAACCTATTGTATACATACTTTAGTTTTGTAA

mRNA sequence

ATGTATACTCACATTGAAGATGTTGTTTATTGTAGTTTTCATTGGATGTTGCATGTCATCGACCTTCGAGAAAATTGTGTTTATGTTTTGGACTCTCTTCGAAGTAAAGTTAATGAAGACATTCATGGAGTCATAAATGTAGGATTGAAAGCATGGAAAGCTAAACATGATCTATAACACTATCGGTCAACTCCAAAATGGAAACCTGTATAGTGTCCTAGTCAATTGGATTCTGTAGGGTGTGGGTACTATGTCCAAAAGTACATACATGAAATAGTGCATAATTCTATAATTGATTTTTGTAA

Coding sequence (CDS)

ATGTATACTCACATTGAAGATGTTGTTTATTGTAGTTTTCATTGGATGTTGCATGTCATCGACCTTCGAGAAAATTGTGTTTATGTTTTGGACTCTCTTCGAAGTAAAGTTAATGAAGACATTCATGGAGTCATAAATGTAGGATTGAAAGCATGGAAAGCTAAACATGATCTATAACACTATCGGTCAACTCCAAAATGGAAACCTGTATAGTGTCCTAGTCAATTGGATTCTGTAGGGTGTGGGTACTATGTCCAAAAGTACATACATGAAATAGTGCATAATTCTATAATTGATTTTTGTAA

Protein sequence

MYTHIEDVVYCSFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKAWKAKHDL*HYRSTPKWKPV*CPSQLDSVGCGYYVQKYIHEIVHNSIIDFCX

Homology

[Close]

BLAST of Chy1G013160 vs. ExPASy TrEMBL
Match: A0A5A7SR27 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold500G00110 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.9e-41
Identity = 77/89 (86.52%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 8   VVYCSFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKAWKAKHDL*HYRSTPKW 67
           + Y +FHWMLHVIDLRENCVYVLDSLRSKVNEDIHG+INVGLK W+AKHDL  YRSTPKW
Sbjct: 47  LAYITFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGIINVGLKTWQAKHDLQRYRSTPKW 106

Query: 68  KPV*CPSQLDSVGCGYYVQKYIHEIVHNS 97
           +PV CP QLDSVGCGYYVQKYIHEIVHNS
Sbjct: 107 RPVKCPRQLDSVGCGYYVQKYIHEIVHNS 135

[Close]

BLAST of Chy1G013160 vs. ExPASy TrEMBL
Match: A0A5D3CGD1 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00120 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.9e-40
Identity = 77/89 (86.52%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 8   VVYCSFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKAWKAKHDL*HYRSTPKW 67
           + Y +FHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLK W AKHDL  YR TPKW
Sbjct: 901 LAYITFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKTWNAKHDLQRYRLTPKW 960

Query: 68  KPV*CPSQLDSVGCGYYVQKYIHEIVHNS 97
           +PV CP QLDSVGCGYYVQKYIHEIVHNS
Sbjct: 961 RPVKCPCQLDSVGCGYYVQKYIHEIVHNS 989

[Close]

BLAST of Chy1G013160 vs. ExPASy TrEMBL
Match: A0A5A7U441 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001120 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.9e-40
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 13  FHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKAWKAKHDL*HYRSTPKWKPV*C 72
           FHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLK W+AKHDL  YRSTPKW+PV C
Sbjct: 692 FHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKTWQAKHDLQRYRSTPKWRPVKC 751

Query: 73  PSQLDSVGCGYYVQKYIHEIVHNS 97
           P QLDSVGCGYYVQKYIHEIVHNS
Sbjct: 752 PRQLDSVGCGYYVQKYIHEIVHNS 775

[Close]

BLAST of Chy1G013160 vs. ExPASy TrEMBL
Match: A0A5D3C2U9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00070 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.1e-40
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 13   FHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKAWKAKHDL*HYRSTPKWKPV*C 72
            FHWMLHVIDLRENCVYVLDSLRSKVNEDIHG+INVGLK W+AKHDL  YRSTPKW+PV C
Sbjct: 1392 FHWMLHVIDLRENCVYVLDSLRSKVNEDIHGIINVGLKTWQAKHDLQRYRSTPKWRPVKC 1451

Query: 73   PSQLDSVGCGYYVQKYIHEIVHNS 97
            P QLDSVGCGYYVQKYIHEIVHNS
Sbjct: 1452 PRQLDSVGCGYYVQKYIHEIVHNS 1475

[Close]

BLAST of Chy1G013160 vs. ExPASy TrEMBL
Match: A0A5D3CUJ0 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00250 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.1e-40
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 13  FHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKAWKAKHDL*HYRSTPKWKPV*C 72
           FHWMLHVIDLRENCVYVLDSLRSKVNEDIHG+INVGLK W+AKHDL  YRSTPKW+PV C
Sbjct: 240 FHWMLHVIDLRENCVYVLDSLRSKVNEDIHGIINVGLKTWQAKHDLQRYRSTPKWRPVKC 299

Query: 73  PSQLDSVGCGYYVQKYIHEIVHNS 97
           P QLDSVGCGYYVQKYIHEIVHNS
Sbjct: 300 PRQLDSVGCGYYVQKYIHEIVHNS 323

[Close]

BLAST of Chy1G013160 vs. NCBI nr
Match: KAA0032486.1 (uncharacterized protein E6C27_scaffold500G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (451), Expect = 9.23e-55
Identity = 77/87 (88.51%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 10  YCSFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKAWKAKHDL*HYRSTPKWKP 69
           Y +FHWMLHVIDLRENCVYVLDSLRSKVNEDIHG+INVGLK W+AKHDL  YRSTPKW+P
Sbjct: 49  YITFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGIINVGLKTWQAKHDLQRYRSTPKWRP 108

Query: 70  V*CPSQLDSVGCGYYVQKYIHEIVHNS 96
           V CP QLDSVGCGYYVQKYIHEIVHNS
Sbjct: 109 VKCPRQLDSVGCGYYVQKYIHEIVHNS 135

[Close]

BLAST of Chy1G013160 vs. NCBI nr
Match: TYK16306.1 (uncharacterized protein E5676_scaffold21G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (445), Expect = 9.70e-54
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 12  SFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKAWKAKHDL*HYRSTPKWKPV* 71
            FHWMLHVIDLRENCVYVLDSLRSKVNEDIHG+INVGLK W+AKHDL  YRSTPKW+PV 
Sbjct: 68  GFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGIINVGLKTWQAKHDLQRYRSTPKWRPVK 127

Query: 72  CPSQLDSVGCGYYVQKYIHEIVHNS 96
           CP QLDSVGCGYYVQKYIHEIVHNS
Sbjct: 128 CPRQLDSVGCGYYVQKYIHEIVHNS 152

[Close]

BLAST of Chy1G013160 vs. NCBI nr
Match: KAA0025172.1 (uncharacterized protein E6C27_scaffold541G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (443), Expect = 1.95e-53
Identity = 76/88 (86.36%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 12  SFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKAWKAKHDL*HYRSTPKWKPV* 71
            FHWMLHVIDLRENCVYVLDSLRSKVNEDIHG+INVGLK W+ KHDL  YRSTPKW+PV 
Sbjct: 68  GFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGIINVGLKTWQPKHDLQRYRSTPKWRPVK 127

Query: 72  CPSQLDSVGCGYYVQKYIHEIVHNSIID 99
           CP QLDSVGCGYYVQKYIHEIVHNS I 
Sbjct: 128 CPRQLDSVGCGYYVQKYIHEIVHNSSIS 155

[Close]

BLAST of Chy1G013160 vs. NCBI nr
Match: KAA0063045.1 (uncharacterized protein E6C27_scaffold468G001580 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (440), Expect = 2.98e-53
Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 10  YCSFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKAWKAKHDL*HYRSTPKWKP 69
           Y +FHWMLHVIDLREN VYVLDSLRSKVNEDIHG+INVGLK W+AKHDL  YRSTPKW+P
Sbjct: 46  YITFHWMLHVIDLRENYVYVLDSLRSKVNEDIHGIINVGLKTWQAKHDLQRYRSTPKWRP 105

Query: 70  V*CPSQLDSVGCGYYVQKYIHEIVHNS 96
           V CP QLDSVGCGYYVQKYIHEIVHNS
Sbjct: 106 VKCPRQLDSVGCGYYVQKYIHEIVHNS 132

[Close]

BLAST of Chy1G013160 vs. NCBI nr
Match: TYK07626.1 (uncharacterized protein E5676_scaffold105G00250 [Cucumis melo var. makuwa] >TYK15132.1 uncharacterized protein E5676_scaffold259G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (445), Expect = 1.21e-51
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 12  SFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKAWKAKHDL*HYRSTPKWKPV* 71
            FHWMLHVIDLRENCVYVLDSLRSKVNEDIHG+INVGLK W+AKHDL  YRSTPKW+PV 
Sbjct: 239 GFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGIINVGLKTWQAKHDLQRYRSTPKWRPVK 298

Query: 72  CPSQLDSVGCGYYVQKYIHEIVHNS 96
           CP QLDSVGCGYYVQKYIHEIVHNS
Sbjct: 299 CPRQLDSVGCGYYVQKYIHEIVHNS 323

The following BLAST results are available for this feature:

BLAST of Chy1G013160 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G013160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SR27	7.9e-41	86.52	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3CGD1	3.9e-40	86.52	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00120 PE=...	[more]
A0A5A7U441	3.9e-40	91.67	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001120 P...	[more]
A0A5D3C2U9	5.1e-40	90.48	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00070 PE...	[more]
A0A5D3CUJ0	5.1e-40	90.48	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of Chy1G013160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032486.1	9.23e-55	88.51	uncharacterized protein E6C27_scaffold500G00110 [Cucumis melo var. makuwa]	[more]
TYK16306.1	9.70e-54	89.41	uncharacterized protein E5676_scaffold21G00830 [Cucumis melo var. makuwa]	[more]
KAA0025172.1	1.95e-53	86.36	uncharacterized protein E6C27_scaffold541G00130 [Cucumis melo var. makuwa]	[more]
KAA0063045.1	2.98e-53	87.36	uncharacterized protein E6C27_scaffold468G001580 [Cucumis melo var. makuwa]	[more]
TYK07626.1	1.21e-51	89.41	uncharacterized protein E5676_scaffold105G00250 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of Chy1G013160 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 12..93 e-value: 6.2E-7 score: 29.5
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PROSITE	PS50600	ULP_PROTEASE	coord: 1..90 score: 9.357138
None	No IPR available	GENE3D	3.40.395.10	Adenoviral Proteinase; Chain A	coord: 8..99 e-value: 2.7E-14 score: 55.1
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 10..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy1G013160.1	Chy1G013160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008234	cysteine-type peptidase activity