Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCCTTGGTTTTTTGTTCTTCTCTTCTTAGTCGCCAAAGCTCATGCTACGATGACCAACCAAATCGACCTGCAAGCAGCTATGGACGAGATGAGATTAAAATCTTACCATGGCTTTGCCATACTACTCAAGATCTTGAACAGCACCACTAAAACCTTGCAGAATTCAAATATAACCTTCTTCATGCCTACTGATCAGGAACTTTCTCAAGCTGATATCTCCCCGGACAGACTTGAAGAATTCGTTTTGAGCCATTCTATCCCCACAGCATTACTACTCAACAATCTTTTACACTTCCCAAATGGCACCTTGGTTCCATCAAGCATCCCAAACAGAATGATCAGAATAACCAACTGCAGAAAGATGGGTGTGTGCCTAAACAATGCACGAATCATTACCCCGAACGTGTGCTTAACCTCGTCTATAAGATGTCATGGTATAAGCACAGCAATTTCATATGACAAAACTTCCTTTTCAGATACTTTACCTGCTAAGCAAAGTTCAGCTGAAATTATAGTTCAAAGGAATGAAATGAATGGAGCAAAATCTTTACAGTCTGGAGCAATGAAGAAGAACCGTTCACTGCACTGA
mRNA sequence
ATGACGCCTTGGTTTTTTGTTCTTCTCTTCTTAGTCGCCAAAGCTCATGCTACGATGACCAACCAAATCGACCTGCAAGCAGCTATGGACGAGATGAGATTAAAATCTTACCATGGCTTTGCCATACTACTCAAGATCTTGAACAGCACCACTAAAACCTTGCAGAATTCAAATATAACCTTCTTCATGCCTACTGATCAGGAACTTTCTCAAGCTGATATCTCCCCGGACAGACTTGAAGAATTCGTTTTGAGCCATTCTATCCCCACAGCATTACTACTCAACAATCTTTTACACTTCCCAAATGGCACCTTGGTTCCATCAAGCATCCCAAACAGAATGATCAGAATAACCAACTGCAGAAAGATGGATACTTTACCTGCTAAGCAAAGTTCAGCTGAAATTATAGTTCAAAGGAATGAAATGAATGGAGCAAAATCTTTACAGTCTGGAGCAATGAAGAAGAACCGTTCACTGCACTGA
Coding sequence (CDS)
ATGACGCCTTGGTTTTTTGTTCTTCTCTTCTTAGTCGCCAAAGCTCATGCTACGATGACCAACCAAATCGACCTGCAAGCAGCTATGGACGAGATGAGATTAAAATCTTACCATGGCTTTGCCATACTACTCAAGATCTTGAACAGCACCACTAAAACCTTGCAGAATTCAAATATAACCTTCTTCATGCCTACTGATCAGGAACTTTCTCAAGCTGATATCTCCCCGGACAGACTTGAAGAATTCGTTTTGAGCCATTCTATCCCCACAGCATTACTACTCAACAATCTTTTACACTTCCCAAATGGCACCTTGGTTCCATCAAGCATCCCAAACAGAATGATCAGAATAACCAACTGCAGAAAGATGGATACTTTACCTGCTAAGCAAAGTTCAGCTGAAATTATAGTTCAAAGGAATGAAATGAATGGAGCAAAATCTTTACAGTCTGGAGCAATGAAGAAGAACCGTTCACTGCACTGA
Protein sequence
MTPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNITFFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNCRKMDTLPAKQSSAEIIVQRNEMNGAKSLQSGAMKKNRSLH*
Homology
BLAST of Chy1G011050 vs. ExPASy TrEMBL
Match:
A0A0A0K7Q8 (FAS1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G272100 PE=3 SV=1)
HSP 1 Score: 287.0 bits (733), Expect = 5.0e-74
Identity = 157/197 (79.70%), Postives = 158/197 (80.20%), Query Frame = 0
Query: 1 MTPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60
M PWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT
Sbjct: 1 MAPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60
Query: 61 FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120
FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC
Sbjct: 61 FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120
Query: 121 RKM-------------------------------------DTLPAKQSSAEIIVQRNEMN 161
RKM DTLPAKQSSAEIIVQRNE+
Sbjct: 121 RKMGVCLNNARIITPNVCLTSSIRCHGISTAISYDKTSFSDTLPAKQSSAEIIVQRNEIK 180
BLAST of Chy1G011050 vs. ExPASy TrEMBL
Match:
A0A5D3E7C1 (Fasciclin-like arabinogalactan protein 19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00700 PE=3 SV=1)
HSP 1 Score: 274.2 bits (700), Expect = 3.4e-70
Identity = 148/198 (74.75%), Postives = 156/198 (78.79%), Query Frame = 0
Query: 1 MTPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60
M PWFFVLLFL+ KAHATMTNQIDLQAAMD+MRLKSYHGF ILLKILNSTTKTLQNSNIT
Sbjct: 1 MAPWFFVLLFLMTKAHATMTNQIDLQAAMDQMRLKSYHGFTILLKILNSTTKTLQNSNIT 60
Query: 61 FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120
FFMPTDQELSQADISP+RL++FVLSHSIPTALLLNNLLHFPNG+LVPSSIPNRMIRITNC
Sbjct: 61 FFMPTDQELSQADISPNRLKDFVLSHSIPTALLLNNLLHFPNGSLVPSSIPNRMIRITNC 120
Query: 121 RKM--------------------------------------DTLPAKQSSAEIIVQRNEM 161
RKM DTLPAKQSSA+IIVQRNEM
Sbjct: 121 RKMGVCVNNARIITPNVCLTSSIRCHGISSAISYDKTSAFSDTLPAKQSSADIIVQRNEM 180
BLAST of Chy1G011050 vs. ExPASy TrEMBL
Match:
A0A1S3CGC4 (uncharacterized protein LOC107990279 OS=Cucumis melo OX=3656 GN=LOC107990279 PE=3 SV=1)
HSP 1 Score: 274.2 bits (700), Expect = 3.4e-70
Identity = 148/198 (74.75%), Postives = 156/198 (78.79%), Query Frame = 0
Query: 1 MTPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60
M PWFFVLLFL+ KAHATMTNQIDLQAAMD+MRLKSYHGF ILLKILNSTTKTLQNSNIT
Sbjct: 1 MAPWFFVLLFLMTKAHATMTNQIDLQAAMDQMRLKSYHGFTILLKILNSTTKTLQNSNIT 60
Query: 61 FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120
FFMPTDQELSQADISP+RL++FVLSHSIPTALLLNNLLHFPNG+LVPSSIPNRMIRITNC
Sbjct: 61 FFMPTDQELSQADISPNRLKDFVLSHSIPTALLLNNLLHFPNGSLVPSSIPNRMIRITNC 120
Query: 121 RKM--------------------------------------DTLPAKQSSAEIIVQRNEM 161
RKM DTLPAKQSSA+IIVQRNEM
Sbjct: 121 RKMGVCVNNARIITPNVCLTSSIRCHGISSAISYDKTSAFSDTLPAKQSSADIIVQRNEM 180
BLAST of Chy1G011050 vs. ExPASy TrEMBL
Match:
A0A0A0K6H7 (FAS1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G033340 PE=3 SV=1)
HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 136/197 (69.04%), Postives = 142/197 (72.08%), Query Frame = 0
Query: 1 MTPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60
MTPWFFVLLFLVAKA ATMTNQ DLQAAMDEMRLKSYHGF ILLKILN++ KTLQNS+IT
Sbjct: 1 MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60
Query: 61 FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120
FFMPTDQELSQADIS D+LEEFVL HSIPT LLLNNL HFPNG+LVPSSIPNRMI+IT
Sbjct: 61 FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 120
Query: 121 RKM-------------------------------------DTLPAKQSSAEIIVQRNEMN 161
R M DTLPAKQS AE IVQRNE
Sbjct: 121 RMMGVCVNDALIVTPNVCLTSSIRCHGISTAISYDKNSFSDTLPAKQSLAEPIVQRNEKK 180
BLAST of Chy1G011050 vs. ExPASy TrEMBL
Match:
A0A5A7V055 (FAS1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001160 PE=3 SV=1)
HSP 1 Score: 233.0 bits (593), Expect = 8.6e-58
Identity = 132/197 (67.01%), Postives = 142/197 (72.08%), Query Frame = 0
Query: 1 MTPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60
MTP FFVLL L+AKA A MTNQ DLQAAMDEMRLKSYHGF ILLKILN++ KTLQNS+IT
Sbjct: 1 MTPSFFVLLLLLAKAQAIMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60
Query: 61 FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120
FFMPTDQELSQADIS D+LEEFVLSHSIPT+LLLNNLLHFPNG+LVPSSIPNRMI+IT
Sbjct: 61 FFMPTDQELSQADISLDQLEEFVLSHSIPTSLLLNNLLHFPNGSLVPSSIPNRMIKITKS 120
Query: 121 RKM-------------------------------------DTLPAKQSSAEIIVQRNEMN 161
RKM +TLPAKQ+ AE IVQRNE
Sbjct: 121 RKMGVCVNEARIVTPNVCLTSSIRCHGISTAISYDKTSFSETLPAKQNLAETIVQRNEKK 180
BLAST of Chy1G011050 vs. NCBI nr
Match:
XP_004149424.1 (uncharacterized protein LOC101220860 [Cucumis sativus])
HSP 1 Score: 288 bits (738), Expect = 3.83e-97
Identity = 157/197 (79.70%), Postives = 158/197 (80.20%), Query Frame = 0
Query: 1 MTPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60
M PWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT
Sbjct: 1 MAPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60
Query: 61 FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120
FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC
Sbjct: 61 FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120
Query: 121 RKM-------------------------------------DTLPAKQSSAEIIVQRNEMN 160
RKM DTLPAKQSSAEIIVQRNE+
Sbjct: 121 RKMGVCLNNARIITPNVCLTSSIRCHGISTAISYDKTSFSDTLPAKQSSAEIIVQRNEIK 180
BLAST of Chy1G011050 vs. NCBI nr
Match:
XP_008461950.1 (PREDICTED: uncharacterized protein LOC107990279 [Cucumis melo] >KAA0048757.1 fasciclin-like arabinogalactan protein 19 [Cucumis melo var. makuwa] >TYK31576.1 fasciclin-like arabinogalactan protein 19 [Cucumis melo var. makuwa])
HSP 1 Score: 276 bits (705), Expect = 4.22e-92
Identity = 148/198 (74.75%), Postives = 156/198 (78.79%), Query Frame = 0
Query: 1 MTPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60
M PWFFVLLFL+ KAHATMTNQIDLQAAMD+MRLKSYHGF ILLKILNSTTKTLQNSNIT
Sbjct: 1 MAPWFFVLLFLMTKAHATMTNQIDLQAAMDQMRLKSYHGFTILLKILNSTTKTLQNSNIT 60
Query: 61 FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120
FFMPTDQELSQADISP+RL++FVLSHSIPTALLLNNLLHFPNG+LVPSSIPNRMIRITNC
Sbjct: 61 FFMPTDQELSQADISPNRLKDFVLSHSIPTALLLNNLLHFPNGSLVPSSIPNRMIRITNC 120
Query: 121 RKM--------------------------------------DTLPAKQSSAEIIVQRNEM 160
RKM DTLPAKQSSA+IIVQRNEM
Sbjct: 121 RKMGVCVNNARIITPNVCLTSSIRCHGISSAISYDKTSAFSDTLPAKQSSADIIVQRNEM 180
BLAST of Chy1G011050 vs. NCBI nr
Match:
KAE8646144.1 (hypothetical protein Csa_016355 [Cucumis sativus])
HSP 1 Score: 267 bits (683), Expect = 2.43e-88
Identity = 146/185 (78.92%), Postives = 147/185 (79.46%), Query Frame = 0
Query: 13 AKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNITFFMPTDQELSQA 72
AKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNITFFMPTDQELSQA
Sbjct: 42 AKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNITFFMPTDQELSQA 101
Query: 73 DISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNCRKM--------- 132
DISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNCRKM
Sbjct: 102 DISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNCRKMGVCLNNARI 161
Query: 133 ----------------------------DTLPAKQSSAEIIVQRNEMNGAKSLQSGAMKK 160
DTLPAKQSSAEIIVQRNE+ GAKSLQSGAMKK
Sbjct: 162 ITPNVCLTSSIRCHGISTAISYDKTSFSDTLPAKQSSAEIIVQRNEIKGAKSLQSGAMKK 221
BLAST of Chy1G011050 vs. NCBI nr
Match:
KAE8645713.1 (hypothetical protein Csa_020262 [Cucumis sativus])
HSP 1 Score: 261 bits (666), Expect = 1.01e-86
Identity = 136/160 (85.00%), Postives = 142/160 (88.75%), Query Frame = 0
Query: 1 MTPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60
MTPWFFVLLFLVAKA ATMTNQ DLQAAMDEMRLKSYHGF ILLKILN++ KTLQNS+IT
Sbjct: 1 MTPWFFVLLFLVAKAQATMTNQTDLQAAMDEMRLKSYHGFVILLKILNNSNKTLQNSDIT 60
Query: 61 FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120
FFMPTDQELSQADIS D+LEEFVL HSIPT LLLNNL HFPNG+LVPSSIPNRMI+IT
Sbjct: 61 FFMPTDQELSQADISLDQLEEFVLRHSIPTTLLLNNLSHFPNGSLVPSSIPNRMIKITKS 120
Query: 121 RKMDTLPAKQSSAEIIVQRNEMNGAKSLQSGAMKKNRSLH 160
R MDTLPAKQS AE IVQRNE GAKSL S MKKNRSLH
Sbjct: 121 RMMDTLPAKQSLAEPIVQRNEKKGAKSLPSTTMKKNRSLH 160
BLAST of Chy1G011050 vs. NCBI nr
Match:
XP_038887869.1 (uncharacterized protein LOC120077861 [Benincasa hispida])
HSP 1 Score: 243 bits (619), Expect = 5.06e-79
Identity = 135/197 (68.53%), Postives = 140/197 (71.07%), Query Frame = 0
Query: 1 MTPWFFVLLFLVAKAHATMTNQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNIT 60
M PWFFVLLFLVAKA AT NQ DLQ AMDEMRLKSYHGF ILL ILNS+ KTLQNS+IT
Sbjct: 1 MAPWFFVLLFLVAKAQATTINQTDLQVAMDEMRLKSYHGFVILLNILNSSHKTLQNSDIT 60
Query: 61 FFMPTDQELSQADISPDRLEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITNC 120
FFMP DQELS A ISPD LE+FVLSHS+PTALLLNNLLHFPNG+LVPSSIPNRMI ITNC
Sbjct: 61 FFMPNDQELSLAAISPDGLEDFVLSHSVPTALLLNNLLHFPNGSLVPSSIPNRMISITNC 120
Query: 121 RKM-------------------------------------DTLPAKQSSAEIIVQRNEMN 160
RKM DTLPAKQSSAE IVQRNE
Sbjct: 121 RKMGVCVNNARIVTPNVCLTSSIRCHGISSTITYDKTSISDTLPAKQSSAETIVQRNEKK 180
BLAST of Chy1G011050 vs. TAIR 10
Match:
AT5G26730.1 (Fasciclin-like arabinogalactan family protein )
HSP 1 Score: 109.0 bits (271), Expect = 3.6e-24
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 0
Query: 21 NQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNITFFMPTDQELSQADISPDRLE 80
NQ DL +AM +MR +SY+GF ILL+ LN T +N++ITF MP+D ++S ADI+P+ LE
Sbjct: 114 NQTDLISAMTDMRRQSYNGFVILLRFLND-TNYFRNTDITFLMPSDNDISHADITPESLE 173
Query: 81 EFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRIT 119
F+L H+IP L++N++LHFPN TLVP S +RM IT
Sbjct: 174 TFILKHTIPAWLMINHMLHFPNRTLVPCSFSDRMFTIT 210
BLAST of Chy1G011050 vs. TAIR 10
Match:
AT5G16920.1 (Fasciclin-like arabinogalactan family protein )
HSP 1 Score: 73.6 bits (179), Expect = 1.7e-13
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 0
Query: 21 NQIDLQAAMDEMRLKSYHGFAILLKILNSTTKTLQNSNITFFMPTDQELSQADI--SPDR 80
N +L A++EM +Y F +L+ +L S +N+TF MP D+ LS ++I D
Sbjct: 32 NNHELSIAIEEMEKANYFSFVMLINMLPSVNPRFL-ANVTFLMPKDKTLSTSNIINQQDS 91
Query: 81 LEEFVLSHSIPTALLLNNLLHFPNGTLVPSSIPNRMIRITN 120
+ EF+L HSIP++LL +L PNG++VPSS+P+ + I+N
Sbjct: 92 VTEFLLRHSIPSSLLFEHLNLIPNGSIVPSSLPHYTLEISN 131
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K7Q8 | 5.0e-74 | 79.70 | FAS1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G272100 PE=3 S... | [more] |
A0A5D3E7C1 | 3.4e-70 | 74.75 | Fasciclin-like arabinogalactan protein 19 OS=Cucumis melo var. makuwa OX=1194695... | [more] |
A0A1S3CGC4 | 3.4e-70 | 74.75 | uncharacterized protein LOC107990279 OS=Cucumis melo OX=3656 GN=LOC107990279 PE=... | [more] |
A0A0A0K6H7 | 4.1e-60 | 69.04 | FAS1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G033340 PE=3 S... | [more] |
A0A5A7V055 | 8.6e-58 | 67.01 | FAS1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... | [more] |
Match Name | E-value | Identity | Description | |
XP_004149424.1 | 3.83e-97 | 79.70 | uncharacterized protein LOC101220860 [Cucumis sativus] | [more] |
XP_008461950.1 | 4.22e-92 | 74.75 | PREDICTED: uncharacterized protein LOC107990279 [Cucumis melo] >KAA0048757.1 fas... | [more] |
KAE8646144.1 | 2.43e-88 | 78.92 | hypothetical protein Csa_016355 [Cucumis sativus] | [more] |
KAE8645713.1 | 1.01e-86 | 85.00 | hypothetical protein Csa_020262 [Cucumis sativus] | [more] |
XP_038887869.1 | 5.06e-79 | 68.53 | uncharacterized protein LOC120077861 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
AT5G26730.1 | 3.6e-24 | 54.08 | Fasciclin-like arabinogalactan family protein | [more] |
AT5G16920.1 | 1.7e-13 | 39.60 | Fasciclin-like arabinogalactan family protein | [more] |