Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAATCCATCGACTAGTTCTATACCCACTGGCAAACCTAAAAGGTTGAAGATAATTTCGGCTCACAATCCCTTGAGAAGACTGCGCAAAATTAGTGAGATTCCAAAATCTTCATCCTTCGAGTCTTCTCACTCTATGCATAAAGCTCCTTCGGTTATCTCTTTTTGTTCTCTTGGCTCTTCGAAAAAGGTTTCAGGCAAGGGTAATTCTCCTGTCATTTCTCGTGCTTCCTCCTTTTGTTACGCTAGGTTTTATGTTTTGGACTCTGAATTAGCCTAGACTATTGTTGTTGATTCCAACTCCACCAGTGAAGACAATGTGGTCCTCTTTGATATTTTGAAGAGGAAAGCCTCTACCAGTTTATCTCTCACCAAGAAGCCAAATTCTGTAAAAGGTAAGAAACCTTTTGTCTCTCATCCCTCAAATGCCGATAAACTGTATGAAGCTTTGTTTGGCACTCATTCTTCACCTCATCGGACGACATCCAAACGTTCTATCACGACCACTTTTGCTCTTGTCTCATCCCAGCCAAGCAATCTACTGATACCACGATTACCTGTTTACCGAATTTGA
mRNA sequence
ATGTCAAATCCATCGACTAGTTCTATACCCACTGGCAAACCTAAAAGGTTGAAGATAATTTCGGCTCACAATCCCTTGAGAAGACTGCGCAAAATTAGTGAGATTCCAAAATCTTCATCCTTCGAGTCTTCTCACTCTATGCATAAAGCTCCTTCGGTTATCTCTTTTTGTTCTCTTGGCTCTTCGAAAAAGACTATTGTTGTTGATTCCAACTCCACCAGTGAAGACAATGTGGTCCTCTTTGATATTTTGAAGAGGAAAGCCTCTACCAGTTTATCTCTCACCAAGAAGCCAAATTCTGTAAAAGGTAAGAAACCTTTTGTCTCTCATCCCTCAAATGCCGATAAACTGTATGAAGCTTTGTTTGGCACTCATTCTTCACCTCATCGGACGACATCCAAACGTTCTATCACGACCACTTTTGCTCTTGTCTCATCCCAGCCAAGCAATCTACTGATACCACGATTACCTGTTTACCGAATTTGA
Coding sequence (CDS)
ATGTCAAATCCATCGACTAGTTCTATACCCACTGGCAAACCTAAAAGGTTGAAGATAATTTCGGCTCACAATCCCTTGAGAAGACTGCGCAAAATTAGTGAGATTCCAAAATCTTCATCCTTCGAGTCTTCTCACTCTATGCATAAAGCTCCTTCGGTTATCTCTTTTTGTTCTCTTGGCTCTTCGAAAAAGACTATTGTTGTTGATTCCAACTCCACCAGTGAAGACAATGTGGTCCTCTTTGATATTTTGAAGAGGAAAGCCTCTACCAGTTTATCTCTCACCAAGAAGCCAAATTCTGTAAAAGGTAAGAAACCTTTTGTCTCTCATCCCTCAAATGCCGATAAACTGTATGAAGCTTTGTTTGGCACTCATTCTTCACCTCATCGGACGACATCCAAACGTTCTATCACGACCACTTTTGCTCTTGTCTCATCCCAGCCAAGCAATCTACTGATACCACGATTACCTGTTTACCGAATTTGA
Protein sequence
MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIPKSSSFESSHSMHKAPSVISFCSLGSSKKTIVVDSNSTSEDNVVLFDILKRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTHSSPHRTTSKRSITTTFALVSSQPSNLLIPRLPVYRI*
Homology
BLAST of Chy1G010010 vs. ExPASy TrEMBL
Match:
A0A5A7UBA4 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00390 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 73/183 (39.89%), Postives = 88/183 (48.09%), Query Frame = 0
Query: 1 MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIP-KSSSFESSHSMH----------- 60
M PS+ + PT K KR K+I A +P RLR SEIP SSS ESS S+H
Sbjct: 1 MMTPSSLTNPTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDT 60
Query: 61 -KAP---------SVI--SFCSLGSSKK------------TIVVDSNSTSEDNVVLFDIL 120
K P VI SF L S +K TIVVDS S EDNVVL +L
Sbjct: 61 SKTPLKPTIYTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVL 120
Query: 121 KRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTHSSPHRTTSKRSITTTFALV 148
KRKA+ K + KKP + P+N ++LYE LFGT S H S + L
Sbjct: 121 KRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSHEAPSSGKHPSKSTLS 180
BLAST of Chy1G010010 vs. ExPASy TrEMBL
Match:
A0A5D3BFA1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00410 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 73/183 (39.89%), Postives = 88/183 (48.09%), Query Frame = 0
Query: 1 MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIP-KSSSFESSHSMH----------- 60
M PS+ + PT K KR K+I A +P RLR SEIP SSS ESS S+H
Sbjct: 1 MMTPSSLTNPTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDT 60
Query: 61 -KAP---------SVI--SFCSLGSSKK------------TIVVDSNSTSEDNVVLFDIL 120
K P VI SF L S +K TIVVDS S EDNVVL +L
Sbjct: 61 SKTPLKPTIYTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVL 120
Query: 121 KRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTHSSPHRTTSKRSITTTFALV 148
KRKA+ K + KKP + P+N ++LYE LFGT S H S + L
Sbjct: 121 KRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSHEAPSSGKHPSKSTLS 180
BLAST of Chy1G010010 vs. ExPASy TrEMBL
Match:
A0A5D3BAD6 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002360 PE=4 SV=1)
HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 60/152 (39.47%), Postives = 79/152 (51.97%), Query Frame = 0
Query: 1 MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIPKSSSFESSHSMHKAPSVISFCSLG 60
MS PS S+ T KPKR K+I NPLR + P S S+ +
Sbjct: 1 MSTPSASTPSTEKPKRYKMIHTRNPLRGYNALVNPPVVSRPSSTRRV------------- 60
Query: 61 SSKKTIVVDSNSTSEDNVVLFDILKRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEA 120
S KT +DSNS ED+V+L ++LKRK +T S +K+ + VK K V+ PS A +LYE
Sbjct: 61 KSIKTTAIDSNSFDEDHVLLSEVLKRKTNTQASTSKQSSLVKLKNRKVAKPSIAIELYEE 120
Query: 121 LFGTHSSPHRTTSKRSITTTFALVSSQPSNLL 153
LFGT S HR +S R FA S + + L
Sbjct: 121 LFGTPPSDHRNSSSRPYPPIFASFSFKAKHYL 139
BLAST of Chy1G010010 vs. ExPASy TrEMBL
Match:
A0A5D3D2R5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00250 PE=4 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 6.3e-08
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 0
Query: 25 PLRRLRKISEIPKSSSFESSHSMHKAPSVISFCSLGSSKKTIVVDSNSTSEDNVVLFDIL 84
PL+ L +++ SS ++ S + P +I S S + + +S S+ +DNVVL ++L
Sbjct: 19 PLKPL-TVTDTQSPSSRFANFSHQRRPRII--ISDSKSIEIVAAESESSEDDNVVLSNVL 78
Query: 85 KRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTHSSPHRTTSKRSITTTFALV 144
KRKAS+ + K+ S KKP V SNA++LYE LFG S H+ +S + T+A +
Sbjct: 79 KRKASSKAPICKESVSDLSKKPGVGRSSNANELYEELFGISSLGHKASSASKVQNTYAPL 138
Query: 145 SSQPS 150
SS+P+
Sbjct: 139 SSKPT 140
BLAST of Chy1G010010 vs. ExPASy TrEMBL
Match:
A0A5A7SV86 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00470 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 52/139 (37.41%), Postives = 74/139 (53.24%), Query Frame = 0
Query: 1 MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIPKSSSFESSHSMHKAPSVIS----- 60
MS PS+S PT K KR K+I A +P +RLR+ SE+P +S S S+ +PS S
Sbjct: 16 MSTPSSSPNPTSKHKRFKMILARHPYQRLRRTSELPPAS---CSKSIEVSPSACSRPDSQ 75
Query: 61 -----FCSLGSSKKTIVVDSNSTSEDNVVLFDILKRKASTSLSLT--KKPNSVKGKKPF- 120
S S++ + + +S E NVVL D+LK KA+T S T K P + K KPF
Sbjct: 76 RKPRVIISNSESEEDVASEPSSLDEGNVVLADVLKWKATTFASATHVKSPTTDKKFKPFN 135
Query: 121 ----VSHPSNADKLYEALF 123
+ P ++D+ + LF
Sbjct: 136 QKTQKNFPHSSDEPIDDLF 151
BLAST of Chy1G010010 vs. NCBI nr
Match:
TYJ97943.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 79.0 bits (193), Expect = 1.23e-13
Identity = 70/169 (41.42%), Postives = 83/169 (49.11%), Query Frame = 0
Query: 1 MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIP-KSSSFESSHSMH----------- 60
M PS+ + PT K KR K+I A +P RLR SEIP SSS ESS S+H
Sbjct: 1 MMTPSSLTNPTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDT 60
Query: 61 -KAP---------SVI--SFCSLGSSKK------------TIVVDSNSTSEDNVVLFDIL 120
K P VI SF L S +K TIVVDS S EDNVVL +L
Sbjct: 61 SKTPLKPTIYTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVL 120
Query: 121 KRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTHSSPHRTTS 133
KRKA+ K + KKP + P+N ++LYE LFGT S H S
Sbjct: 121 KRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSHEAPS 169
BLAST of Chy1G010010 vs. NCBI nr
Match:
KAA0051667.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 79.0 bits (193), Expect = 1.24e-13
Identity = 70/169 (41.42%), Postives = 83/169 (49.11%), Query Frame = 0
Query: 1 MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIP-KSSSFESSHSMH----------- 60
M PS+ + PT K KR K+I A +P RLR SEIP SSS ESS S+H
Sbjct: 1 MMTPSSLTNPTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDT 60
Query: 61 -KAP---------SVI--SFCSLGSSKK------------TIVVDSNSTSEDNVVLFDIL 120
K P VI SF L S +K TIVVDS S EDNVVL +L
Sbjct: 61 SKTPLKPTIYTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVL 120
Query: 121 KRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTHSSPHRTTS 133
KRKA+ K + KKP + P+N ++LYE LFGT S H S
Sbjct: 121 KRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSHEAPS 169
BLAST of Chy1G010010 vs. NCBI nr
Match:
KAA0036860.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYJ95924.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 78.2 bits (191), Expect = 1.49e-13
Identity = 60/152 (39.47%), Postives = 79/152 (51.97%), Query Frame = 0
Query: 1 MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIPKSSSFESSHSMHKAPSVISFCSLG 60
MS PS S+ T KPKR K+I NPLR + P S S+ +
Sbjct: 1 MSTPSASTPSTEKPKRYKMIHTRNPLRGYNALVNPPVVSRPSSTRRVK------------ 60
Query: 61 SSKKTIVVDSNSTSEDNVVLFDILKRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEA 120
S KT +DSNS ED+V+L ++LKRK +T S +K+ + VK K V+ PS A +LYE
Sbjct: 61 -SIKTTAIDSNSFDEDHVLLSEVLKRKTNTQASTSKQSSLVKLKNRKVAKPSIAIELYEE 120
Query: 121 LFGTHSSPHRTTSKRSITTTFALVSSQPSNLL 152
LFGT S HR +S R FA S + + L
Sbjct: 121 LFGTPPSDHRNSSSRPYPPIFASFSFKAKHYL 139
BLAST of Chy1G010010 vs. NCBI nr
Match:
KAA0032272.1 (uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK17076.1 uncharacterized protein E5676_scaffold1327G00250 [Cucumis melo var. makuwa])
HSP 1 Score: 64.3 bits (155), Expect = 1.32e-09
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 0
Query: 66 IVVDSNSTSEDNVVLFDILKRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTH 125
+ +S S+ +DNVVL ++LKRKAS+ + K+ S KKP V SNA++LYE LFG
Sbjct: 57 VAAESESSEDDNVVLSNVLKRKASSKAPICKESVSDLSKKPGVGRSSNANELYEELFGIS 116
Query: 126 SSPHRTTSKRSITTTFALVSSQPS 149
S H+ +S + T+A +SS+P+
Sbjct: 117 SLGHKASSASKVQNTYAPLSSKPT 140
BLAST of Chy1G010010 vs. NCBI nr
Match:
KAA0033876.1 (uncharacterized protein E6C27_scaffold43059G00610 [Cucumis melo var. makuwa] >TYK01260.1 uncharacterized protein E5676_scaffold49G00470 [Cucumis melo var. makuwa])
HSP 1 Score: 59.7 bits (143), Expect = 5.03e-07
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 0
Query: 1 MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIPKSSSFESSHSMHKAPSVISFCSL- 60
MS PS+S PT K KR K+I A +P +RLR+ SE+P +S S S+ +PS CS
Sbjct: 16 MSTPSSSPNPTSKHKRFKMILARHPYQRLRRTSELPPASC---SKSIEVSPSA---CSRP 75
Query: 61 GSSKKTIVVDSNSTSED------------NVVLFDILKRKASTSLSLT--KKPNSVKGKK 120
S +K V+ SNS SE+ NVVL D+LK KA+T S T K P + K K
Sbjct: 76 DSQRKPRVIISNSESEEDVASEPSSLDEGNVVLADVLKWKATTFASATHVKSPTTDKKFK 135
Query: 121 PF-----VSHPSNADKLYEALF 122
PF + P ++D+ + LF
Sbjct: 136 PFNQKTQKNFPHSSDEPIDDLF 151
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UBA4 | 1.4e-12 | 39.89 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5D3BFA1 | 1.4e-12 | 39.89 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5D3BAD6 | 3.2e-12 | 39.47 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5D3D2R5 | 6.3e-08 | 36.80 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7SV86 | 1.5e-06 | 37.41 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
TYJ97943.1 | 1.23e-13 | 41.42 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
KAA0051667.1 | 1.24e-13 | 41.42 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
KAA0036860.1 | 1.49e-13 | 39.47 | flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYJ95924.1 flocculat... | [more] |
KAA0032272.1 | 1.32e-09 | 42.86 | uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK... | [more] |
KAA0033876.1 | 5.03e-07 | 40.14 | uncharacterized protein E6C27_scaffold43059G00610 [Cucumis melo var. makuwa] >TY... | [more] |
Match Name | E-value | Identity | Description | |