Chy1G010010 (gene) Cucumber (hystrix) v1

Overview
NameChy1G010010
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionFlocculation protein FLO11-like
LocationchrH01: 10404623 .. 10405198 (-)
RNA-Seq ExpressionChy1G010010
SyntenyChy1G010010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAATCCATCGACTAGTTCTATACCCACTGGCAAACCTAAAAGGTTGAAGATAATTTCGGCTCACAATCCCTTGAGAAGACTGCGCAAAATTAGTGAGATTCCAAAATCTTCATCCTTCGAGTCTTCTCACTCTATGCATAAAGCTCCTTCGGTTATCTCTTTTTGTTCTCTTGGCTCTTCGAAAAAGGTTTCAGGCAAGGGTAATTCTCCTGTCATTTCTCGTGCTTCCTCCTTTTGTTACGCTAGGTTTTATGTTTTGGACTCTGAATTAGCCTAGACTATTGTTGTTGATTCCAACTCCACCAGTGAAGACAATGTGGTCCTCTTTGATATTTTGAAGAGGAAAGCCTCTACCAGTTTATCTCTCACCAAGAAGCCAAATTCTGTAAAAGGTAAGAAACCTTTTGTCTCTCATCCCTCAAATGCCGATAAACTGTATGAAGCTTTGTTTGGCACTCATTCTTCACCTCATCGGACGACATCCAAACGTTCTATCACGACCACTTTTGCTCTTGTCTCATCCCAGCCAAGCAATCTACTGATACCACGATTACCTGTTTACCGAATTTGA

mRNA sequence

ATGTCAAATCCATCGACTAGTTCTATACCCACTGGCAAACCTAAAAGGTTGAAGATAATTTCGGCTCACAATCCCTTGAGAAGACTGCGCAAAATTAGTGAGATTCCAAAATCTTCATCCTTCGAGTCTTCTCACTCTATGCATAAAGCTCCTTCGGTTATCTCTTTTTGTTCTCTTGGCTCTTCGAAAAAGACTATTGTTGTTGATTCCAACTCCACCAGTGAAGACAATGTGGTCCTCTTTGATATTTTGAAGAGGAAAGCCTCTACCAGTTTATCTCTCACCAAGAAGCCAAATTCTGTAAAAGGTAAGAAACCTTTTGTCTCTCATCCCTCAAATGCCGATAAACTGTATGAAGCTTTGTTTGGCACTCATTCTTCACCTCATCGGACGACATCCAAACGTTCTATCACGACCACTTTTGCTCTTGTCTCATCCCAGCCAAGCAATCTACTGATACCACGATTACCTGTTTACCGAATTTGA

Coding sequence (CDS)

ATGTCAAATCCATCGACTAGTTCTATACCCACTGGCAAACCTAAAAGGTTGAAGATAATTTCGGCTCACAATCCCTTGAGAAGACTGCGCAAAATTAGTGAGATTCCAAAATCTTCATCCTTCGAGTCTTCTCACTCTATGCATAAAGCTCCTTCGGTTATCTCTTTTTGTTCTCTTGGCTCTTCGAAAAAGACTATTGTTGTTGATTCCAACTCCACCAGTGAAGACAATGTGGTCCTCTTTGATATTTTGAAGAGGAAAGCCTCTACCAGTTTATCTCTCACCAAGAAGCCAAATTCTGTAAAAGGTAAGAAACCTTTTGTCTCTCATCCCTCAAATGCCGATAAACTGTATGAAGCTTTGTTTGGCACTCATTCTTCACCTCATCGGACGACATCCAAACGTTCTATCACGACCACTTTTGCTCTTGTCTCATCCCAGCCAAGCAATCTACTGATACCACGATTACCTGTTTACCGAATTTGA

Protein sequence

MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIPKSSSFESSHSMHKAPSVISFCSLGSSKKTIVVDSNSTSEDNVVLFDILKRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTHSSPHRTTSKRSITTTFALVSSQPSNLLIPRLPVYRI*
Homology
BLAST of Chy1G010010 vs. ExPASy TrEMBL
Match: A0A5A7UBA4 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00390 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 73/183 (39.89%), Postives = 88/183 (48.09%), Query Frame = 0

Query: 1   MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIP-KSSSFESSHSMH----------- 60
           M  PS+ + PT K KR K+I A +P  RLR  SEIP  SSS ESS S+H           
Sbjct: 1   MMTPSSLTNPTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDT 60

Query: 61  -KAP---------SVI--SFCSLGSSKK------------TIVVDSNSTSEDNVVLFDIL 120
            K P          VI  SF  L S +K            TIVVDS S  EDNVVL  +L
Sbjct: 61  SKTPLKPTIYTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVL 120

Query: 121 KRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTHSSPHRTTSKRSITTTFALV 148
           KRKA+      K     + KKP  + P+N ++LYE LFGT  S H   S     +   L 
Sbjct: 121 KRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSHEAPSSGKHPSKSTLS 180

BLAST of Chy1G010010 vs. ExPASy TrEMBL
Match: A0A5D3BFA1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00410 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 73/183 (39.89%), Postives = 88/183 (48.09%), Query Frame = 0

Query: 1   MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIP-KSSSFESSHSMH----------- 60
           M  PS+ + PT K KR K+I A +P  RLR  SEIP  SSS ESS S+H           
Sbjct: 1   MMTPSSLTNPTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDT 60

Query: 61  -KAP---------SVI--SFCSLGSSKK------------TIVVDSNSTSEDNVVLFDIL 120
            K P          VI  SF  L S +K            TIVVDS S  EDNVVL  +L
Sbjct: 61  SKTPLKPTIYTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVL 120

Query: 121 KRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTHSSPHRTTSKRSITTTFALV 148
           KRKA+      K     + KKP  + P+N ++LYE LFGT  S H   S     +   L 
Sbjct: 121 KRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSHEAPSSGKHPSKSTLS 180

BLAST of Chy1G010010 vs. ExPASy TrEMBL
Match: A0A5D3BAD6 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002360 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.2e-12
Identity = 60/152 (39.47%), Postives = 79/152 (51.97%), Query Frame = 0

Query: 1   MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIPKSSSFESSHSMHKAPSVISFCSLG 60
           MS PS S+  T KPKR K+I   NPLR    +   P  S   S+  +             
Sbjct: 1   MSTPSASTPSTEKPKRYKMIHTRNPLRGYNALVNPPVVSRPSSTRRV------------- 60

Query: 61  SSKKTIVVDSNSTSEDNVVLFDILKRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEA 120
            S KT  +DSNS  ED+V+L ++LKRK +T  S +K+ + VK K   V+ PS A +LYE 
Sbjct: 61  KSIKTTAIDSNSFDEDHVLLSEVLKRKTNTQASTSKQSSLVKLKNRKVAKPSIAIELYEE 120

Query: 121 LFGTHSSPHRTTSKRSITTTFALVSSQPSNLL 153
           LFGT  S HR +S R     FA  S +  + L
Sbjct: 121 LFGTPPSDHRNSSSRPYPPIFASFSFKAKHYL 139

BLAST of Chy1G010010 vs. ExPASy TrEMBL
Match: A0A5D3D2R5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00250 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-08
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 0

Query: 25  PLRRLRKISEIPKSSSFESSHSMHKAPSVISFCSLGSSKKTIVVDSNSTSEDNVVLFDIL 84
           PL+ L  +++    SS  ++ S  + P +I   S   S + +  +S S+ +DNVVL ++L
Sbjct: 19  PLKPL-TVTDTQSPSSRFANFSHQRRPRII--ISDSKSIEIVAAESESSEDDNVVLSNVL 78

Query: 85  KRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTHSSPHRTTSKRSITTTFALV 144
           KRKAS+   + K+  S   KKP V   SNA++LYE LFG  S  H+ +S   +  T+A +
Sbjct: 79  KRKASSKAPICKESVSDLSKKPGVGRSSNANELYEELFGISSLGHKASSASKVQNTYAPL 138

Query: 145 SSQPS 150
           SS+P+
Sbjct: 139 SSKPT 140

BLAST of Chy1G010010 vs. ExPASy TrEMBL
Match: A0A5A7SV86 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00470 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 52/139 (37.41%), Postives = 74/139 (53.24%), Query Frame = 0

Query: 1   MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIPKSSSFESSHSMHKAPSVIS----- 60
           MS PS+S  PT K KR K+I A +P +RLR+ SE+P +S    S S+  +PS  S     
Sbjct: 16  MSTPSSSPNPTSKHKRFKMILARHPYQRLRRTSELPPAS---CSKSIEVSPSACSRPDSQ 75

Query: 61  -----FCSLGSSKKTIVVDSNSTSEDNVVLFDILKRKASTSLSLT--KKPNSVKGKKPF- 120
                  S   S++ +  + +S  E NVVL D+LK KA+T  S T  K P + K  KPF 
Sbjct: 76  RKPRVIISNSESEEDVASEPSSLDEGNVVLADVLKWKATTFASATHVKSPTTDKKFKPFN 135

Query: 121 ----VSHPSNADKLYEALF 123
                + P ++D+  + LF
Sbjct: 136 QKTQKNFPHSSDEPIDDLF 151

BLAST of Chy1G010010 vs. NCBI nr
Match: TYJ97943.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.23e-13
Identity = 70/169 (41.42%), Postives = 83/169 (49.11%), Query Frame = 0

Query: 1   MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIP-KSSSFESSHSMH----------- 60
           M  PS+ + PT K KR K+I A +P  RLR  SEIP  SSS ESS S+H           
Sbjct: 1   MMTPSSLTNPTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDT 60

Query: 61  -KAP---------SVI--SFCSLGSSKK------------TIVVDSNSTSEDNVVLFDIL 120
            K P          VI  SF  L S +K            TIVVDS S  EDNVVL  +L
Sbjct: 61  SKTPLKPTIYTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVL 120

Query: 121 KRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTHSSPHRTTS 133
           KRKA+      K     + KKP  + P+N ++LYE LFGT  S H   S
Sbjct: 121 KRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSHEAPS 169

BLAST of Chy1G010010 vs. NCBI nr
Match: KAA0051667.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.24e-13
Identity = 70/169 (41.42%), Postives = 83/169 (49.11%), Query Frame = 0

Query: 1   MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIP-KSSSFESSHSMH----------- 60
           M  PS+ + PT K KR K+I A +P  RLR  SEIP  SSS ESS S+H           
Sbjct: 1   MMTPSSLTNPTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDT 60

Query: 61  -KAP---------SVI--SFCSLGSSKK------------TIVVDSNSTSEDNVVLFDIL 120
            K P          VI  SF  L S +K            TIVVDS S  EDNVVL  +L
Sbjct: 61  SKTPLKPTIYTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVL 120

Query: 121 KRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTHSSPHRTTS 133
           KRKA+      K     + KKP  + P+N ++LYE LFGT  S H   S
Sbjct: 121 KRKATAIAPCAKGDTPERPKKPKTTRPTNVEELYEKLFGTPISSHEAPS 169

BLAST of Chy1G010010 vs. NCBI nr
Match: KAA0036860.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYJ95924.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 1.49e-13
Identity = 60/152 (39.47%), Postives = 79/152 (51.97%), Query Frame = 0

Query: 1   MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIPKSSSFESSHSMHKAPSVISFCSLG 60
           MS PS S+  T KPKR K+I   NPLR    +   P  S   S+  +             
Sbjct: 1   MSTPSASTPSTEKPKRYKMIHTRNPLRGYNALVNPPVVSRPSSTRRVK------------ 60

Query: 61  SSKKTIVVDSNSTSEDNVVLFDILKRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEA 120
            S KT  +DSNS  ED+V+L ++LKRK +T  S +K+ + VK K   V+ PS A +LYE 
Sbjct: 61  -SIKTTAIDSNSFDEDHVLLSEVLKRKTNTQASTSKQSSLVKLKNRKVAKPSIAIELYEE 120

Query: 121 LFGTHSSPHRTTSKRSITTTFALVSSQPSNLL 152
           LFGT  S HR +S R     FA  S +  + L
Sbjct: 121 LFGTPPSDHRNSSSRPYPPIFASFSFKAKHYL 139

BLAST of Chy1G010010 vs. NCBI nr
Match: KAA0032272.1 (uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK17076.1 uncharacterized protein E5676_scaffold1327G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.32e-09
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 66  IVVDSNSTSEDNVVLFDILKRKASTSLSLTKKPNSVKGKKPFVSHPSNADKLYEALFGTH 125
           +  +S S+ +DNVVL ++LKRKAS+   + K+  S   KKP V   SNA++LYE LFG  
Sbjct: 57  VAAESESSEDDNVVLSNVLKRKASSKAPICKESVSDLSKKPGVGRSSNANELYEELFGIS 116

Query: 126 SSPHRTTSKRSITTTFALVSSQPS 149
           S  H+ +S   +  T+A +SS+P+
Sbjct: 117 SLGHKASSASKVQNTYAPLSSKPT 140

BLAST of Chy1G010010 vs. NCBI nr
Match: KAA0033876.1 (uncharacterized protein E6C27_scaffold43059G00610 [Cucumis melo var. makuwa] >TYK01260.1 uncharacterized protein E5676_scaffold49G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 5.03e-07
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 0

Query: 1   MSNPSTSSIPTGKPKRLKIISAHNPLRRLRKISEIPKSSSFESSHSMHKAPSVISFCSL- 60
           MS PS+S  PT K KR K+I A +P +RLR+ SE+P +S    S S+  +PS    CS  
Sbjct: 16  MSTPSSSPNPTSKHKRFKMILARHPYQRLRRTSELPPASC---SKSIEVSPSA---CSRP 75

Query: 61  GSSKKTIVVDSNSTSED------------NVVLFDILKRKASTSLSLT--KKPNSVKGKK 120
            S +K  V+ SNS SE+            NVVL D+LK KA+T  S T  K P + K  K
Sbjct: 76  DSQRKPRVIISNSESEEDVASEPSSLDEGNVVLADVLKWKATTFASATHVKSPTTDKKFK 135

Query: 121 PF-----VSHPSNADKLYEALF 122
           PF      + P ++D+  + LF
Sbjct: 136 PFNQKTQKNFPHSSDEPIDDLF 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UBA41.4e-1239.89Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3BFA11.4e-1239.89Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3BAD63.2e-1239.47Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3D2R56.3e-0836.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SV861.5e-0637.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYJ97943.11.23e-1341.42flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
KAA0051667.11.24e-1341.42flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
KAA0036860.11.49e-1339.47flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYJ95924.1 flocculat... [more]
KAA0032272.11.32e-0942.86uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK... [more]
KAA0033876.15.03e-0740.14uncharacterized protein E6C27_scaffold43059G00610 [Cucumis melo var. makuwa] >TY... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy1G010010.1Chy1G010010.1mRNA