Chy12G221580 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G221580
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	transcription factor PRE5-like
Location	chrH12: 19181006 .. 19181337 (-)
RNA-Seq Expression	Chy12G221580
Synteny	Chy12G221580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCCAAATTAGGTGATGATGAGCTTAAAAATCTTGTCTCCAAATTGCAAACTTTGCTCCCTCAACTCAACCATAAGCCCCACAACTCCTCTGAGGTACTTAATTTCGTTGTCCTCTACTTAATTTCTTCTTTAACTTAAACTTAAACTTAACTTAACTTCTTATATGTGAATAGGTATCGGCGGGGGAGATATTGAAGGAGACGTGTGAATATATAAAGAAGTTGCAAAGGGAAGTGGATGACTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTATTGACTTTGAAATGGTTAAAGATCTTCTAAGTTTTACTTAA

mRNA sequence

ATGGCTTCCTCCAAATTAGGTGATGATGAGCTTAAAAATCTTGTCTCCAAATTGCAAACTTTGCTCCCTCAACTCAACCATAAGCCCCACAACTCCTCTGAGGTATCGGCGGGGGAGATATTGAAGGAGACGTGTGAATATATAAAGAAGTTGCAAAGGGAAGTGGATGACTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTATTGACTTTGAAATGGTTAAAGATCTTCTAAGTTTTACTTAA

Coding sequence (CDS)

ATGGCTTCCTCCAAATTAGGTGATGATGAGCTTAAAAATCTTGTCTCCAAATTGCAAACTTTGCTCCCTCAACTCAACCATAAGCCCCACAACTCCTCTGAGGTATCGGCGGGGGAGATATTGAAGGAGACGTGTGAATATATAAAGAAGTTGCAAAGGGAAGTGGATGACTTAAGTGAGAGGCTATGGAAGCAGCTGGATTCAATGGGTATTGACTTTGAAATGGTTAAAGATCTTCTAAGTTTTACTTAA

Protein sequence

MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSERLWKQLDSMGIDFEMVKDLLSFT*

Homology

[Close]

BLAST of Chy12G221580 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.0e-12
Identity = 35/70 (50.00%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 3  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSERL 62
          +S++ DD++ +LVSKL+  LP++ H+   S +VSA ++L+ETC YI+KL REVD+LS+RL
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEI-HERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRL 71

Query: 63 WKQLDSMGID 73
           + LDS+  D
Sbjct: 72 SQLLDSVDED 80

[Close]

BLAST of Chy12G221580 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.0e-12
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 3  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSERL 62
          SS++ DD++ +LVSKLQ L+P+L  +   S +VSA ++L+ETC YI+ L REVDDLS+RL
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRR--RSDKVSASKVLQETCNYIRNLHREVDDLSDRL 73

Query: 63 WKQL---DSMGIDFEMVKDLLSF 83
           + L   D    +  +++ LL++
Sbjct: 74 SELLASTDDNSAEAAIIRSLLNY 94

[Close]

BLAST of Chy12G221580 vs. ExPASy Swiss-Prot
Match: A2XD15 (Transcription factor ILI3 OS=Oryza sativa subsp. indica OX=39946 GN=ILI3 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-10
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 5  KLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSER--- 64
          ++ D+E+  L+SKLQ LLP+ + +   +S  SA ++LKETC YIK L REVDDLS+R   
Sbjct: 13 RITDEEINELISKLQALLPE-SSRSRGASRSSASKLLKETCSYIKSLHREVDDLSDRLSE 72

Query: 65 LWKQLDSMGIDFEMVKDLL 81
          L   +D+     E+++ LL
Sbjct: 73 LMSTMDNNSPQAEIIRSLL 90

[Close]

BLAST of Chy12G221580 vs. ExPASy Swiss-Prot
Match: Q10R47 (Transcription factor ILI3 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI3 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-10
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 5  KLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSER--- 64
          ++ D+E+  L+SKLQ LLP+ + +   +S  SA ++LKETC YIK L REVDDLS+R   
Sbjct: 13 RITDEEINELISKLQALLPE-SSRSRGASRSSASKLLKETCSYIKSLHREVDDLSDRLSE 72

Query: 65 LWKQLDSMGIDFEMVKDLL 81
          L   +D+     E+++ LL
Sbjct: 73 LMSTMDNNSPQAEIIRSLL 90

[Close]

BLAST of Chy12G221580 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-09
Identity = 29/68 (42.65%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 2  ASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSER 61
          +SS++ DD++ +L+SKL+  +P++      S+ VSA ++L+ETC YI+ L +E DDLS+R
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDR 71

Query: 62 LWKQLDSM 70
          L + L+S+
Sbjct: 72 LTQLLESI 78

[Close]

BLAST of Chy12G221580 vs. ExPASy TrEMBL
Match: A0A0A0LQ05 (DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.5e-37
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSE 60
          MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETC+YIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGIDFEMVKDLLSFT 84
          RLWKQLDSMGIDFEMVKDLLSFT
Sbjct: 61 RLWKQLDSMGIDFEMVKDLLSFT 83

[Close]

BLAST of Chy12G221580 vs. ExPASy TrEMBL
Match: A0A5A7SZP9 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00610 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-33
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSE 60
          MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETC+YIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGIDFEMVKDLLSFT 84
          RLWKQLDSMG+DFEMVKDLL FT
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLIFT 83

[Close]

BLAST of Chy12G221580 vs. ExPASy TrEMBL
Match: A0A1S3B0J1 (transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-33
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSE 60
          MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETC+YIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGIDFEMVKDLLSFT 84
          RLWKQLDSMG+DFEMVKDLL FT
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLIFT 83

[Close]

BLAST of Chy12G221580 vs. ExPASy TrEMBL
Match: A0A5D3BKI2 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00710 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.0e-29
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSE 60
          MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETC+YIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGIDFEM 76
          RLWKQLDSMG+DFEM
Sbjct: 61 RLWKQLDSMGVDFEM 75

[Close]

BLAST of Chy12G221580 vs. ExPASy TrEMBL
Match: A0A5B6V213 (Transcription factor ILI3-like OS=Gossypium australe OX=47621 GN=EPI10_029603 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 2  ASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSER 61
          AS+K+ DDEL  L+ +L TLLPQLNH  H  +  S  +ILKETC YI++LQ+EVDDLSER
Sbjct: 4  ASNKITDDELNALILRLGTLLPQLNHGRHGRASSSTTKILKETCSYIRRLQKEVDDLSER 63

Query: 62 LWKQLDSMGI---DFEMVKDLL 81
          L + LDSM I   D E + +LL
Sbjct: 64 LSQCLDSMDITSSDAEFLTNLL 85

[Close]

BLAST of Chy12G221580 vs. NCBI nr
Match: XP_011649678.1 (transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa_014368 [Cucumis sativus])

HSP 1 Score: 166 bits (420), Expect = 1.17e-51
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSE 60
          MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETC+YIKKLQREVDDLSE
Sbjct: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGIDFEMVKDLLSFT 83
          RLWKQLDSMGIDFEMVKDLLSFT
Sbjct: 61 RLWKQLDSMGIDFEMVKDLLSFT 83

[Close]

BLAST of Chy12G221580 vs. NCBI nr
Match: XP_008440200.1 (PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (384), Expect = 3.66e-46
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSE 60
          MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETC+YIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGIDFEMVKDLLSFT 83
          RLWKQLDSMG+DFEMVKDLL FT
Sbjct: 61 RLWKQLDSMGVDFEMVKDLLIFT 83

[Close]

BLAST of Chy12G221580 vs. NCBI nr
Match: TYJ98875.1 (transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (350), Expect = 5.47e-41
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSE 60
          MASSKLGD+ELKNLVSKL+TLLPQLNHKP NSSE S GEILKETC+YIKKLQ+EVDDLSE
Sbjct: 1  MASSKLGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSE 60

Query: 61 RLWKQLDSMGIDFEM 75
          RLWKQLDSMG+DFEM
Sbjct: 61 RLWKQLDSMGVDFEM 75

[Close]

BLAST of Chy12G221580 vs. NCBI nr
Match: KAG6584448.1 (Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127 bits (320), Expect = 1.95e-36
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSE 60
          MASS L DD+L+NL+S+LQTLLPQLNH  H S+ VS  EILKETC+YIKKLQREVDDLSE
Sbjct: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTST-VSTAEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGIDFEMVKDLLS 81
          RLWKQLDSMGIDFEMVK LL+
Sbjct: 61 RLWKQLDSMGIDFEMVKHLLN 80

[Close]

BLAST of Chy12G221580 vs. NCBI nr
Match: KAG7020038.1 (Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127 bits (319), Expect = 2.77e-36
Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSE 60
          MASS L DD+L+NL+S+LQTLLPQLNH  H S+ VS  EILKETC+YIKKLQREVDDLSE
Sbjct: 1  MASSTLPDDQLRNLLSRLQTLLPQLNHTLHTST-VSTAEILKETCDYIKKLQREVDDLSE 60

Query: 61 RLWKQLDSMGIDFEMVKDLLS 81
          RLWKQLDSMG+DFEMVK LL+
Sbjct: 61 RLWKQLDSMGVDFEMVKHLLN 80

[Close]

BLAST of Chy12G221580 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 5.7e-13
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 3  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSERL 62
          SS++ DD++ +LVSKLQ L+P+L  +   S +VSA ++L+ETC YI+ L REVDDLS+RL
Sbjct: 14 SSRISDDQISDLVSKLQHLIPELRRR--RSDKVSASKVLQETCNYIRNLHREVDDLSDRL 73

Query: 63 WKQL---DSMGIDFEMVKDLLSF 83
           + L   D    +  +++ LL++
Sbjct: 74 SELLASTDDNSAEAAIIRSLLNY 94

[Close]

BLAST of Chy12G221580 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 70.9 bits (172), Expect = 5.7e-13
Identity = 35/70 (50.00%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 3  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSERL 62
          +S++ DD++ +LVSKL+  LP++ H+   S +VSA ++L+ETC YI+KL REVD+LS+RL
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEI-HERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRL 71

Query: 63 WKQLDSMGID 73
           + LDS+  D
Sbjct: 72 SQLLDSVDED 80

[Close]

BLAST of Chy12G221580 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 29/68 (42.65%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 2  ASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSER 61
          +SS++ DD++ +L+SKL+  +P++      S+ VSA ++L+ETC YI+ L +E DDLS+R
Sbjct: 12 SSSRISDDQITDLISKLRQSIPEIRQN-RRSNTVSASKVLQETCNYIRNLNKEADDLSDR 71

Query: 62 LWKQLDSM 70
          L + L+S+
Sbjct: 72 LTQLLESI 78

[Close]

BLAST of Chy12G221580 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-10
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 3  SSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSERL 62
          +S++ +D++ +L+ KLQ LLP+L      S +VSA  +L++TC YI+ L REVDDLSERL
Sbjct: 14 TSRISEDQINDLIIKLQQLLPELRDS-RRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72

[Close]

BLAST of Chy12G221580 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-10
Identity = 30/71 (42.25%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 2  ASSKLGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCEYIKKLQREVDDLSER 61
          ++ ++ D+++ +LVSKL+ +LP++  +   S + SA ++L+ETC YI+ L REVD+LSER
Sbjct: 11 SAPRISDNQMIDLVSKLRQILPEIGQR-RRSDKASASKVLQETCNYIRNLNREVDNLSER 70

Query: 62 LWKQLDSMGID 73
          L + L+S+  D
Sbjct: 71 LSQLLESVDED 80

The following BLAST results are available for this feature:

BLAST of Chy12G221580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJX1	8.0e-12	50.00	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
Q8GW32	8.0e-12	44.58	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
A2XD15	3.4e-10	44.30	Transcription factor ILI3 OS=Oryza sativa subsp. indica OX=39946 GN=ILI3 PE=3 SV...	[more]
Q10R47	3.4e-10	44.30	Transcription factor ILI3 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI3 PE=3 ...	[more]
Q9LXG5	1.7e-09	42.65	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]

BLAST of Chy12G221580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ05	1.5e-37	98.80	DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1	[more]
A0A5A7SZP9	2.2e-33	89.16	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3B0J1	2.2e-33	89.16	transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1	[more]
A0A5D3BKI2	2.0e-29	89.33	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5B6V213	1.2e-13	57.32	Transcription factor ILI3-like OS=Gossypium australe OX=47621 GN=EPI10_029603 PE...	[more]

BLAST of Chy12G221580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649678.1	1.17e-51	98.80	transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa...	[more]
XP_008440200.1	3.66e-46	89.16	PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcrip...	[more]
TYJ98875.1	5.47e-41	89.33	transcription factor PRE5-like [Cucumis melo var. makuwa]	[more]
KAG6584448.1	1.95e-36	80.25	Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7020038.1	2.77e-36	79.01	Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Chy12G221580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	5.7e-13	44.58	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G28857.1	5.7e-13	50.00	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G15160.1	1.2e-10	42.65	BANQUO 2	[more]
AT1G74500.1	1.5e-10	50.00	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT5G39860.1	2.0e-10	42.25	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..68
None	No IPR available	PANTHER	PTHR38546:SF3	DNA BINDING PROTEIN	coord: 3..80
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 10..52 e-value: 4.3E-6 score: 26.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 1..51 score: 9.108386
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 8..77 e-value: 1.1E-9 score: 40.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 9..56
IPR044172	Transcription factor ILI2-like	PANTHER	PTHR38546	DNA BINDING PROTEIN	coord: 3..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G221580.1	Chy12G221580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity