Chy12G214890 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCACTGAGGGAGTTGACGGGTGTAACACAAAGAGTAATCACATTATTGAAGTGCAACAAGTACTTGGCATTGAAGCTGCAAGGAAATGTATTATTGAAGAGATAAAATATACCATGGAAAGTCATGGAATGAGCATAGACATACGTCATATGATGCTTTTAGGAGATTTGATGACATTCAGGGTAAGTAAGTTGTGTTGGGTTACAAAAAATTACATGTGTATAGGTTGAGGCAATTAAATATTTTTGCTGTGTGACAGGGTGAAGTTCTTGGAATCACAAGATTTGGCATTCAAAAAATGGATAAAAGTGTACTGATGCTTGCTTCATTTGAGAAAACCGCGGATCATCTTTTTAATGCTTCTGTGAATGGAAGGGATGACAAAATTGAAGGAGTTAGTGAATGCGTAATCATGGGTATACCAATGCCGCTAGGCACTGGCATGTTAAAAGTTAGACAAAGGTATATCTTCTCCTACTGGAACAGAACTCAGTTCATTATTAATATTATTTGAGCATTGATTTCATTGGCAGCATCTGACGAACGTTTTTCTTAATGCCTGGAGTGTGATTTAACATACTTTTATGAGCAATTAGCTGAGAGAATTCTGTGTTCAAATTCCTACAATGTTATTTACTCTCCACTAATATTGATTTACACTTATTGAAACTTCTAATATTTCAAGCCTACAAGTGAGGACAGTGTTAGATGATATAATATTAGATTTACATTCATCCATCAGTTTAAGTTTTTGAGTCAATTCATGATTCAGGTTCAACATTTTGGTTGAGTATTAACATCAACAAATAATTTTGCATATTACAAACTTTAAAGTTTTCATATTTTGAAGCTAATTGAGCTTTGTTTTTAACAGAGTTTCTGTGCCACAACAATTACCTTATGGACCACCTGCAATTCTATCTTGA ATGGGCACTGAGGGAGTTGACGGGTGTAACACAAAGAGTAATCACATTATTGAAGTGCAACAAGTACTTGGCATTGAAGCTGCAAGGAAATGTATTATTGAAGAGATAAAATATACCATGGAAAGTCATGGAATGAGCATAGACATACGTCATATGATGCTTTTAGGAGATTTGATGACATTCAGGGGTGAAGTTCTTGGAATCACAAGATTTGGCATTCAAAAAATGGATAAAAGTGTACTGATGCTTGCTTCATTTGAGAAAACCGCGGATCATCTTTTTAATGCTTCTGTGAATGGAAGGGATGACAAAATTGAAGGAGTTAGTGAATGCGTAATCATGGGTATACCAATGCCGCTAGGCACTGGCATGTTAAAAGTTAGACAAAGAGTTTCTGTGCCACAACAATTACCTTATGGACCACCTGCAATTCTATCTTGA ATGGGCACTGAGGGAGTTGACGGGTGTAACACAAAGAGTAATCACATTATTGAAGTGCAACAAGTACTTGGCATTGAAGCTGCAAGGAAATGTATTATTGAAGAGATAAAATATACCATGGAAAGTCATGGAATGAGCATAGACATACGTCATATGATGCTTTTAGGAGATTTGATGACATTCAGGGGTGAAGTTCTTGGAATCACAAGATTTGGCATTCAAAAAATGGATAAAAGTGTACTGATGCTTGCTTCATTTGAGAAAACCGCGGATCATCTTTTTAATGCTTCTGTGAATGGAAGGGATGACAAAATTGAAGGAGTTAGTGAATGCGTAATCATGGGTATACCAATGCCGCTAGGCACTGGCATGTTAAAAGTTAGACAAAGAGTTTCTGTGCCACAACAATTACCTTATGGACCACCTGCAATTCTATCTTGA MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQRVSVPQQLPYGPPAILS* Homology
BLAST of Chy12G214890 vs. ExPASy Swiss-Prot
Match: F4JXF9 (DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPC1 PE=2 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 1.1e-48 Identity = 97/146 (66.44%), Postives = 116/146 (79.45%), Query Frame = 0
BLAST of Chy12G214890 vs. ExPASy Swiss-Prot
Match: Q5ZL98 (DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus OX=9031 GN=POLR3A PE=2 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 5.3e-43 Identity = 87/141 (61.70%), Postives = 106/141 (75.18%), Query Frame = 0
BLAST of Chy12G214890 vs. ExPASy Swiss-Prot
Match: A4IF62 (DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus OX=9913 GN=POLR3A PE=2 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 6.9e-43 Identity = 87/141 (61.70%), Postives = 107/141 (75.89%), Query Frame = 0
BLAST of Chy12G214890 vs. ExPASy Swiss-Prot
Match: O14802 (DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens OX=9606 GN=POLR3A PE=1 SV=2) HSP 1 Score: 174.5 bits (441), Expect = 9.0e-43 Identity = 87/141 (61.70%), Postives = 106/141 (75.18%), Query Frame = 0
BLAST of Chy12G214890 vs. ExPASy Swiss-Prot
Match: Q86AQ5 (DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum OX=44689 GN=polr3a PE=3 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 2.6e-42 Identity = 83/130 (63.85%), Postives = 103/130 (79.23%), Query Frame = 0
BLAST of Chy12G214890 vs. ExPASy TrEMBL
Match: A0A0A0LXJ4 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_1G083760 PE=4 SV=1) HSP 1 Score: 294.7 bits (753), Expect = 2.2e-76 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Chy12G214890 vs. ExPASy TrEMBL
Match: A0A5A7T0K7 (DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00430 PE=4 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 6.4e-76 Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Chy12G214890 vs. ExPASy TrEMBL
Match: A0A1S3CNX9 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502942 PE=3 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 6.4e-76 Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Chy12G214890 vs. ExPASy TrEMBL
Match: A0A6J1I0L0 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469417 PE=3 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 2.4e-75 Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0
BLAST of Chy12G214890 vs. ExPASy TrEMBL
Match: A0A6J1HLT9 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111464789 PE=3 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 2.4e-75 Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0
BLAST of Chy12G214890 vs. NCBI nr
Match: KAA0036972.1 (DNA-directed RNA polymerase [Cucumis melo var. makuwa] >TYK21234.1 DNA-directed RNA polymerase [Cucumis melo var. makuwa]) HSP 1 Score: 291 bits (744), Expect = 2.18e-97 Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Chy12G214890 vs. NCBI nr
Match: XP_031736287.1 (DNA-directed RNA polymerase III subunit 1 isoform X2 [Cucumis sativus]) HSP 1 Score: 292 bits (748), Expect = 3.37e-89 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Chy12G214890 vs. NCBI nr
Match: XP_004148776.1 (DNA-directed RNA polymerase III subunit 1 isoform X1 [Cucumis sativus] >KAE8652732.1 hypothetical protein Csa_013764 [Cucumis sativus]) HSP 1 Score: 292 bits (748), Expect = 1.01e-88 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Chy12G214890 vs. NCBI nr
Match: XP_008465290.2 (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit 1 [Cucumis melo]) HSP 1 Score: 291 bits (744), Expect = 3.59e-88 Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Chy12G214890 vs. NCBI nr
Match: XP_022156695.1 (DNA-directed RNA polymerase III subunit 1 [Momordica charantia]) HSP 1 Score: 284 bits (726), Expect = 1.54e-87 Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0
BLAST of Chy12G214890 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 ) HSP 1 Score: 194.1 bits (492), Expect = 7.8e-50 Identity = 97/146 (66.44%), Postives = 116/146 (79.45%), Query Frame = 0
BLAST of Chy12G214890 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 ) HSP 1 Score: 194.1 bits (492), Expect = 7.8e-50 Identity = 97/146 (66.44%), Postives = 116/146 (79.45%), Query Frame = 0
BLAST of Chy12G214890 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit ) HSP 1 Score: 105.1 bits (261), Expect = 4.7e-23 Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 0
BLAST of Chy12G214890 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 ) HSP 1 Score: 80.1 bits (196), Expect = 1.6e-15 Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 0
BLAST of Chy12G214890 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein ) HSP 1 Score: 47.8 bits (112), Expect = 9.0e-06 Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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