Chy12G209380 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G209380
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Methyltransferase-related protein
Location	chrH12: 3588191 .. 3588561 (+)
RNA-Seq Expression	Chy12G209380
Synteny	Chy12G209380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCCGCTGAGATTGATTCTCATATTTCTCTCAGCGACTCTTGCAGGCTTCTTCCTTATCCGTAACCTCAAATCTCCCTCTCAAGATTTCCACGCCGACGACCATACTTCCGATTCCAATTCCTCTTCATCCCCCAACTCCAACAAGGTCCTTCTTCCTCTCTCTTCTAATACAATTCTTCTTTAATTTCTTCCATTTCAATATCGCAAATCTTTCTTTCATTAATTGGTGTGTACGTACGTGTTGTATATATATATATGTTTGAACAGATCTCATCGGGGTTCTGGACGGTGGTAGATATGGCTTCCGGTCGCTACTTATGGAGGCATTTGTTTTCGTCGTCGTCGTCGGAGAAGGCTTCCGATTGA

mRNA sequence

ATGTGTCCGCTGAGATTGATTCTCATATTTCTCTCAGCGACTCTTGCAGGCTTCTTCCTTATCCGTAACCTCAAATCTCCCTCTCAAGATTTCCACGCCGACGACCATACTTCCGATTCCAATTCCTCTTCATCCCCCAACTCCAACAAGATCTCATCGGGGTTCTGGACGGTGGTAGATATGGCTTCCGGTCGCTACTTATGGAGGCATTTGTTTTCGTCGTCGTCGTCGGAGAAGGCTTCCGATTGA

Coding sequence (CDS)

ATGTGTCCGCTGAGATTGATTCTCATATTTCTCTCAGCGACTCTTGCAGGCTTCTTCCTTATCCGTAACCTCAAATCTCCCTCTCAAGATTTCCACGCCGACGACCATACTTCCGATTCCAATTCCTCTTCATCCCCCAACTCCAACAAGATCTCATCGGGGTTCTGGACGGTGGTAGATATGGCTTCCGGTCGCTACTTATGGAGGCATTTGTTTTCGTCGTCGTCGTCGGAGAAGGCTTCCGATTGA

Protein sequence

MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPNSNKISSGFWTVVDMASGRYLWRHLFSSSSSEKASD*

Homology

[Close]

BLAST of Chy12G209380 vs. ExPASy TrEMBL
Match: A0A0A0LVB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533620 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPNSNKISSGFWTVVD 60
          MCPLRLILIFLSATLAGF LIRNLKSPSQDFHADDHT DSNSSSSPNSNKISSGFWTVVD
Sbjct: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNSNKISSGFWTVVD 60

Query: 61 MASGRYLWRHLFSSSSSEKASD 83
          MASGRYLWRHLFSSSSSEKASD
Sbjct: 61 MASGRYLWRHLFSSSSSEKASD 82

[Close]

BLAST of Chy12G209380 vs. ExPASy TrEMBL
Match: A0A5A7V291 (Putative Methyltransferase-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00570 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-33
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPNSNKISSGFWTVVD 60
          MCPLR ILIFLSATLAGFFLIRNLKSPSQDFHA DHTSDSNSSSSPNSNKISSGFWTVVD
Sbjct: 1  MCPLRFILIFLSATLAGFFLIRNLKSPSQDFHAQDHTSDSNSSSSPNSNKISSGFWTVVD 60

Query: 61 MASGRYLWRHLFSSSSSEKASD 83
          MASGRYLWRHLF SSSSEKASD
Sbjct: 61 MASGRYLWRHLF-SSSSEKASD 81

[Close]

BLAST of Chy12G209380 vs. ExPASy TrEMBL
Match: A0A6J1DPZ0 (uncharacterized protein LOC111022014 OS=Momordica charantia OX=3673 GN=LOC111022014 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.3e-22
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSS------SSPNSNKISSG 60
          MCPLR ILIFLSATLAGFF++RNLKS  QDF A D  SD++S+      SS +++K+SSG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAADDNSDAHSNDSSAAHSSNSTSKVSSG 60

Query: 61 FWTVVDMASGRYLWRHLFSSSSSEKASD 83
          FWTVVDMASGRYLWRHLF SSSS K SD
Sbjct: 61 FWTVVDMASGRYLWRHLFPSSSSPKRSD 88

[Close]

BLAST of Chy12G209380 vs. ExPASy TrEMBL
Match: A0A1S3BWD8 (uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.8e-20
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDS----NSSSSPNSNKISSGFW 60
          MCPLR ILIFLSATLAGFF++RNLKS  QDF A D++ DS    +SS S + +K+SSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKELDSSDSTSCSKVSSGFW 60

Query: 61 TVVDMASGRYLWRHLFSSSSSEKASD 83
          TVVDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TVVDMASGRYLWRHLF--PSSKKPSD 84

[Close]

BLAST of Chy12G209380 vs. ExPASy TrEMBL
Match: A0A0A0LV42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.2e-20
Identity = 57/86 (66.28%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDF----HADDHTSDSNSSSSPNSNKISSGFW 60
          MCPLR ILIFLSATLAGFF++RNLKS  QDF    ++DD++++ +SS S + +K+SSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDNSNEFDSSDSSSCSKVSSGFW 60

Query: 61 TVVDMASGRYLWRHLFSSSSSEKASD 83
          T+VDMASGRYLWRHLF   SS+K SD
Sbjct: 61 TLVDMASGRYLWRHLF--PSSKKPSD 84

[Close]

BLAST of Chy12G209380 vs. NCBI nr
Match: KGN65855.1 (hypothetical protein Csa_023267 [Cucumis sativus])

HSP 1 Score: 154 bits (390), Expect = 4.14e-47
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPNSNKISSGFWTVVD 60
          MCPLRLILIFLSATLAGF LIRNLKSPSQDFHADDHT DSNSSSSPNSNKISSGFWTVVD
Sbjct: 1  MCPLRLILIFLSATLAGFVLIRNLKSPSQDFHADDHTFDSNSSSSPNSNKISSGFWTVVD 60

Query: 61 MASGRYLWRHLFSSSSSEKASD 82
          MASGRYLWRHLFSSSSSEKASD
Sbjct: 61 MASGRYLWRHLFSSSSSEKASD 82

[Close]

BLAST of Chy12G209380 vs. NCBI nr
Match: KAA0060005.1 (putative Methyltransferase-related protein [Cucumis melo var. makuwa] >TYJ97263.1 putative Methyltransferase-related protein [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (377), Expect = 3.87e-45
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPNSNKISSGFWTVVD 60
          MCPLR ILIFLSATLAGFFLIRNLKSPSQDFHA DHTSDSNSSSSPNSNKISSGFWTVVD
Sbjct: 1  MCPLRFILIFLSATLAGFFLIRNLKSPSQDFHAQDHTSDSNSSSSPNSNKISSGFWTVVD 60

Query: 61 MASGRYLWRHLFSSSSSEKASD 82
          MASGRYLWRHLFSSSS EKASD
Sbjct: 61 MASGRYLWRHLFSSSS-EKASD 81

[Close]

BLAST of Chy12G209380 vs. NCBI nr
Match: XP_038895770.1 (uncharacterized protein LOC120083933 [Benincasa hispida])

HSP 1 Score: 120 bits (300), Expect = 2.42e-33
Identity = 69/88 (78.41%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTS------DSNSSSSPNSNKISSG 60
          MCPLR ILIFLSATLAGFFL+RNLKSPSQDF ADD++       DSNSSSS +S+K+SSG
Sbjct: 1  MCPLRFILIFLSATLAGFFLLRNLKSPSQDFQADDNSDSHSKDLDSNSSSS-SSSKLSSG 60

Query: 61 FWTVVDMASGRYLWRHLFSSSSSEKASD 82
          FWTVVDMASGRYLWRHLFSSS  EK SD
Sbjct: 61 FWTVVDMASGRYLWRHLFSSS--EKPSD 85

[Close]

BLAST of Chy12G209380 vs. NCBI nr
Match: XP_022154856.1 (uncharacterized protein LOC111022014 [Momordica charantia])

HSP 1 Score: 114 bits (284), Expect = 7.26e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADD-----HTSDSNSSSSPNS-NKISSG 60
          MCPLR ILIFLSATLAGFF++RNLKS  QDF A D     H++DS+++ S NS +K+SSG
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFEAADDNSDAHSNDSSAAHSSNSTSKVSSG 60

Query: 61 FWTVVDMASGRYLWRHLFSSSSSEKASD 82
          FWTVVDMASGRYLWRHLF SSSS K SD
Sbjct: 61 FWTVVDMASGRYLWRHLFPSSSSPKRSD 88

[Close]

BLAST of Chy12G209380 vs. NCBI nr
Match: XP_008453499.1 (PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo])

HSP 1 Score: 106 bits (265), Expect = 5.10e-28
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSN----SSSSPNSNKISSGFW 60
          MCPLR ILIFLSATLAGFF++RNLKS  QDF A D++ DS+    SS S + +K+SSGFW
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLKSQPQDFVAGDNSDDSSKELDSSDSTSCSKVSSGFW 60

Query: 61 TVVDMASGRYLWRHLFSSSSSEKASD 82
          TVVDMASGRYLWRHLF SS  +K SD
Sbjct: 61 TVVDMASGRYLWRHLFPSS--KKPSD 84

[Close]

BLAST of Chy12G209380 vs. TAIR 10
Match: AT5G58375.1 (Methyltransferase-related protein )

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-15
Identity = 48/84 (57.14%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQD---------FHADDHTSDSNSSSSPNSNKI 60
          MCPLRLILIFLSATLAGFF+++ L S S D          HADD   DS S  S     +
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADD---DSVSGFSKVGMAM 60

Query: 61 SSGFWTVVDMASGRYLWRHLFSSS 76
           SGFWT VDMASGRYLW +L S++
Sbjct: 61 KSGFWTCVDMASGRYLWNNLCSNA 81

[Close]

BLAST of Chy12G209380 vs. TAIR 10
Match: AT5G18150.1 (Methyltransferase-related protein )

HSP 1 Score: 60.5 bits (145), Expect = 7.6e-10
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPNSNKISSGFWTVVD 60
          MCP+R +L+F SA LAG+F  + + S S +F + D  ++    +     K+ +GFW  VD
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSS-SPEFDSPDELNEKQELNL--KKKMENGFWVFVD 60

Query: 61 MASGRYLWRHL 72
          MASGRYLWR+L
Sbjct: 61 MASGRYLWRNL 68

[Close]

BLAST of Chy12G209380 vs. TAIR 10
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Methyltransferase-related protein (TAIR:AT5G18150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 6.4e-09
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 1  MCPLRLILIFLSATLAGFFLIRNLKSPSQDFHADDHTSDSNSSSSPN-SNKISSGFWTVV 60
          MCPLR +L+F SA LAG+   R + S  + F  +   +++      +   K+ +G WT V
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQAEAKEKQGLDFKRKMDNGLWTFV 60

Query: 61 DMASGRYLWRHL 72
          DMASGRYLWR+L
Sbjct: 61 DMASGRYLWRNL 72

The following BLAST results are available for this feature:

BLAST of Chy12G209380 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G209380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVB2	1.2e-34	97.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533620 PE=4 SV=1	[more]
A0A5A7V291	2.9e-33	96.34	Putative Methyltransferase-related protein OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1DPZ0	2.3e-22	70.45	uncharacterized protein LOC111022014 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A1S3BWD8	2.8e-20	69.77	uncharacterized protein LOC103494193 OS=Cucumis melo OX=3656 GN=LOC103494193 PE=...	[more]
A0A0A0LV42	8.2e-20	66.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025180 PE=4 SV=1	[more]

BLAST of Chy12G209380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65855.1	4.14e-47	97.56	hypothetical protein Csa_023267 [Cucumis sativus]	[more]
KAA0060005.1	3.87e-45	96.34	putative Methyltransferase-related protein [Cucumis melo var. makuwa] >TYJ97263....	[more]
XP_038895770.1	2.42e-33	78.41	uncharacterized protein LOC120083933 [Benincasa hispida]	[more]
XP_022154856.1	7.26e-31	71.59	uncharacterized protein LOC111022014 [Momordica charantia]	[more]
XP_008453499.1	5.10e-28	69.77	PREDICTED: uncharacterized protein LOC103494193 [Cucumis melo]	[more]

BLAST of Chy12G209380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58375.1	6.0e-15	57.14	Methyltransferase-related protein	[more]
AT5G18150.1	7.6e-10	45.07	Methyltransferase-related protein	[more]
AT5G14602.1	6.4e-09	43.06	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..52
None	No IPR available	PANTHER	PTHR34132	EMB\|CAB87627.1-RELATED	coord: 1..78
None	No IPR available	PANTHER	PTHR34132:SF4	EXPRESSED PROTEIN	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G209380.1	Chy12G209380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008168	methyltransferase activity