Chy12G206990 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G206990
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	polyamine-modulated factor 1-binding protein 1
Location	chrH12: 1080171 .. 1080431 (+)
RNA-Seq Expression	Chy12G206990
Synteny	Chy12G206990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTTGAGTTTGATGGGTTATTGAAGGGAACAGGGGATTTGAGAGGTAAAGTACTTGAAATGGAGAGAAATGAGAGAAGGGCATTGGAAGAGATTAGTGATTTGAAGGGAAAATGCAAGAAGTTGTTGAGTGAAAAAAAGGAATGTGAGATTTTGAATGTGAATCTGACGAAAGACAATGAATTGATTAAGAAGTTGTTGGAGGAATCAGGCAGGGTAATTGAAGATTTAGAGAGGAAAGTGGATGTGAAAATGTAG

mRNA sequence

ATGAAGGTTGAGTTTGATGGGTTATTGAAGGGAACAGGGGATTTGAGAGGTAAAGTACTTGAAATGGAGAGAAATGAGAGAAGGGCATTGGAAGAGATTAGTGATTTGAAGGGAAAATGCAAGAAGTTGTTGAGTGAAAAAAAGGAATGTGAGATTTTGAATGTGAATCTGACGAAAGACAATGAATTGATTAAGAAGTTGTTGGAGGAATCAGGCAGGGTAATTGAAGATTTAGAGAGGAAAGTGGATGTGAAAATGTAG

Coding sequence (CDS)

ATGAAGGTTGAGTTTGATGGGTTATTGAAGGGAACAGGGGATTTGAGAGGTAAAGTACTTGAAATGGAGAGAAATGAGAGAAGGGCATTGGAAGAGATTAGTGATTTGAAGGGAAAATGCAAGAAGTTGTTGAGTGAAAAAAAGGAATGTGAGATTTTGAATGTGAATCTGACGAAAGACAATGAATTGATTAAGAAGTTGTTGGAGGAATCAGGCAGGGTAATTGAAGATTTAGAGAGGAAAGTGGATGTGAAAATGTAG

Protein sequence

MKVEFDGLLKGTGDLRGKVLEMERNERRALEEISDLKGKCKKLLSEKKECEILNVNLTKDNELIKKLLEESGRVIEDLERKVDVKM*

Homology

[Close]

BLAST of Chy12G206990 vs. ExPASy TrEMBL
Match: A0A5D3D489 (Cingulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00730 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 79/86 (91.86%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1   MKVEFDGLLKGTGDLRGKVLEMERNERRALEEISDLKGKCKKLLSEKKECEILNVNLTKD 60
           +KVEFDGLLK TGDLRGKV+EMERNERR LEEI DLKGKCKKLLSEKKE EILN NLTKD
Sbjct: 165 IKVEFDGLLKETGDLRGKVVEMERNERRTLEEIDDLKGKCKKLLSEKKEREILNGNLTKD 224

Query: 61  NELIKKLLEESGRVIEDLERKVDVKM 87
           NELIKKLLEESGRVIEDLERKVDVKM
Sbjct: 225 NELIKKLLEESGRVIEDLERKVDVKM 250

[Close]

BLAST of Chy12G206990 vs. ExPASy TrEMBL
Match: A0A1S3C0Q0 (cingulin OS=Cucumis melo OX=3656 GN=LOC103495485 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 79/86 (91.86%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1   MKVEFDGLLKGTGDLRGKVLEMERNERRALEEISDLKGKCKKLLSEKKECEILNVNLTKD 60
           +KVEFDGLLK TGDLRGKV+EMERNERR LEEI DLKGKCKKLLSEKKE EILN NLTKD
Sbjct: 165 IKVEFDGLLKETGDLRGKVVEMERNERRTLEEIDDLKGKCKKLLSEKKEREILNGNLTKD 224

Query: 61  NELIKKLLEESGRVIEDLERKVDVKM 87
           NELIKKLLEESGRVIEDLERKVDVKM
Sbjct: 225 NELIKKLLEESGRVIEDLERKVDVKM 250

[Close]

BLAST of Chy12G206990 vs. ExPASy TrEMBL
Match: A0A0A0LII4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G015350 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.1e-26
Identity = 69/86 (80.23%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 1   MKVEFDGLLKGTGDLRGKVLEMERNERRALEEISDLKGKCKKLLSEKKECEILNVNLTKD 60
           +K E  GL+        +V+EMERNERRALEEI DLKGKCKKLLSEKKECEILN NLTKD
Sbjct: 137 LKAEITGLV-------SEVVEMERNERRALEEIDDLKGKCKKLLSEKKECEILNANLTKD 196

Query: 61  NELIKKLLEESGRVIEDLERKVDVKM 87
           NELIKKLLEESGRVIEDLERKVDVKM
Sbjct: 197 NELIKKLLEESGRVIEDLERKVDVKM 215

[Close]

BLAST of Chy12G206990 vs. ExPASy TrEMBL
Match: A0A6J1FD80 (polyamine-modulated factor 1-binding protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111444320 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.8e-23
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1   MKVEFDGLLKGTGDLRGKVLEMERNERRALEEISDLKGKCKKLLSEKKECEILNVNLTKD 60
           +K +FDGL + TGDLR K++EME+NERRALEEI DLK KCKKL  EK E E++N NL K+
Sbjct: 170 IKADFDGLFEETGDLRRKMVEMEKNERRALEEIEDLKVKCKKLSGEKMESEVMNGNLLKE 229

Query: 61  NELIKKLLEESGRVIEDLERKVDVK 86
            EL+K+LL+ESGRVIEDLERKVD+K
Sbjct: 230 KELVKRLLDESGRVIEDLERKVDLK 254

[Close]

BLAST of Chy12G206990 vs. ExPASy TrEMBL
Match: A0A6J1HKX2 (polyamine-modulated factor 1-binding protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111465485 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.1e-22
Identity = 59/85 (69.41%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 1   MKVEFDGLLKGTGDLRGKVLEMERNERRALEEISDLKGKCKKLLSEKKECEILNVNLTKD 60
           +K +FDGL + TGDLR K++EME+NERRALEEI DLK KCKKL  EK E EI N  L K+
Sbjct: 169 IKADFDGLFEETGDLRRKMVEMEKNERRALEEIEDLKVKCKKLSGEKMESEITNGTLLKE 228

Query: 61  NELIKKLLEESGRVIEDLERKVDVK 86
            EL+K+LL+ESGRVIEDLERKVD+K
Sbjct: 229 KELVKRLLDESGRVIEDLERKVDLK 253

[Close]

BLAST of Chy12G206990 vs. NCBI nr
Match: XP_011648795.1 (desmoplakin [Cucumis sativus] >KGN60890.2 hypothetical protein Csa_023473 [Cucumis sativus])

HSP 1 Score: 154 bits (389), Expect = 6.57e-42
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1   MKVEFDGLLKGTGDLRGKVLEMERNERRALEEISDLKGKCKKLLSEKKECEILNVNLTKD 60
           +KVEFDGLLK TGDLRGKV+EMERNERRALEEI DLKGKCKKLLSEKKECEILN NLTKD
Sbjct: 165 IKVEFDGLLKETGDLRGKVVEMERNERRALEEIDDLKGKCKKLLSEKKECEILNANLTKD 224

Query: 61  NELIKKLLEESGRVIEDLERKVDVKM 86
           NELIKKLLEESGRVIEDLERKVDVKM
Sbjct: 225 NELIKKLLEESGRVIEDLERKVDVKM 250

[Close]

BLAST of Chy12G206990 vs. NCBI nr
Match: XP_008455286.1 (PREDICTED: cingulin [Cucumis melo])

HSP 1 Score: 147 bits (370), Expect = 4.73e-39
Identity = 79/86 (91.86%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1   MKVEFDGLLKGTGDLRGKVLEMERNERRALEEISDLKGKCKKLLSEKKECEILNVNLTKD 60
           +KVEFDGLLK TGDLRGKV+EMERNERR LEEI DLKGKCKKLLSEKKE EILN NLTKD
Sbjct: 165 IKVEFDGLLKETGDLRGKVVEMERNERRTLEEIDDLKGKCKKLLSEKKEREILNGNLTKD 224

Query: 61  NELIKKLLEESGRVIEDLERKVDVKM 86
           NELIKKLLEESGRVIEDLERKVDVKM
Sbjct: 225 NELIKKLLEESGRVIEDLERKVDVKM 250

[Close]

BLAST of Chy12G206990 vs. NCBI nr
Match: KAA0063670.1 (cingulin [Cucumis melo var. makuwa] >TYK18356.1 cingulin [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (370), Expect = 4.73e-39
Identity = 79/86 (91.86%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1   MKVEFDGLLKGTGDLRGKVLEMERNERRALEEISDLKGKCKKLLSEKKECEILNVNLTKD 60
           +KVEFDGLLK TGDLRGKV+EMERNERR LEEI DLKGKCKKLLSEKKE EILN NLTKD
Sbjct: 165 IKVEFDGLLKETGDLRGKVVEMERNERRTLEEIDDLKGKCKKLLSEKKEREILNGNLTKD 224

Query: 61  NELIKKLLEESGRVIEDLERKVDVKM 86
           NELIKKLLEESGRVIEDLERKVDVKM
Sbjct: 225 NELIKKLLEESGRVIEDLERKVDVKM 250

[Close]

BLAST of Chy12G206990 vs. NCBI nr
Match: XP_038889361.1 (paramyosin-like [Benincasa hispida])

HSP 1 Score: 135 bits (339), Expect = 1.05e-34
Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1   MKVEFDGLLKGTGDLRGKVLEMERNERRALEEISDLKGKCKKLLSEKKECEILNVNLTKD 60
           +KV+FD L K TGDL+GKV+EMERNE RALEEI DLKGKCKKLL+EKKEC+I+N  L KD
Sbjct: 165 IKVQFDDLFKETGDLKGKVVEMERNETRALEEIDDLKGKCKKLLTEKKECDIMNGTLMKD 224

Query: 61  NELIKKLLEESGRVIEDLERKVDVKM 86
           NELIKKLL+ESGRV+EDLERKVDVKM
Sbjct: 225 NELIKKLLDESGRVVEDLERKVDVKM 250

[Close]

BLAST of Chy12G206990 vs. NCBI nr
Match: XP_022938144.1 (polyamine-modulated factor 1-binding protein 1 [Cucurbita moschata])

HSP 1 Score: 115 bits (288), Expect = 1.14e-27
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1   MKVEFDGLLKGTGDLRGKVLEMERNERRALEEISDLKGKCKKLLSEKKECEILNVNLTKD 60
           +K +FDGL + TGDLR K++EME+NERRALEEI DLK KCKKL  EK E E++N NL K+
Sbjct: 170 IKADFDGLFEETGDLRRKMVEMEKNERRALEEIEDLKVKCKKLSGEKMESEVMNGNLLKE 229

Query: 61  NELIKKLLEESGRVIEDLERKVDVK 85
            EL+K+LL+ESGRVIEDLERKVD+K
Sbjct: 230 KELVKRLLDESGRVIEDLERKVDLK 254

The following BLAST results are available for this feature:

BLAST of Chy12G206990 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G206990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D489	1.5e-32	91.86	Cingulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00730 PE=4 ...	[more]
A0A1S3C0Q0	1.5e-32	91.86	cingulin OS=Cucumis melo OX=3656 GN=LOC103495485 PE=4 SV=1	[more]
A0A0A0LII4	6.1e-26	80.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G015350 PE=4 SV=1	[more]
A0A6J1FD80	4.8e-23	69.41	polyamine-modulated factor 1-binding protein 1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HKX2	4.1e-22	69.41	polyamine-modulated factor 1-binding protein 1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Chy12G206990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648795.1	6.57e-42	94.19	desmoplakin [Cucumis sativus] >KGN60890.2 hypothetical protein Csa_023473 [Cucum...	[more]
XP_008455286.1	4.73e-39	91.86	PREDICTED: cingulin [Cucumis melo]	[more]
KAA0063670.1	4.73e-39	91.86	cingulin [Cucumis melo var. makuwa] >TYK18356.1 cingulin [Cucumis melo var. maku...	[more]
XP_038889361.1	1.05e-34	80.23	paramyosin-like [Benincasa hispida]	[more]
XP_022938144.1	1.14e-27	69.41	polyamine-modulated factor 1-binding protein 1 [Cucurbita moschata]	[more]

BLAST of Chy12G206990 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..46
None	No IPR available	COILS	Coil	Coil	coord: 61..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G206990.1	Chy12G206990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome