Chy12G206280 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G206280
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Girdin-like
Location	chrH12: 288307 .. 288735 (+)
RNA-Seq Expression	Chy12G206280
Synteny	Chy12G206280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTTGGGACCCAACATATCCAAAGAAGGAGACTTGAGTGTCTTTCTTTTCAAAAATGAGTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAATGCAGTGATTCATAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACCATGGGAAGGTGTTAACTATACACCATTATTAGTTTTGTGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTATAAGACTTTGAATTTTTATACGATCTTGAAGACTGTCAAGGAAAAAAACGTCGAGTAGTATGTGCATGGAAGTCTGTGAGGAAGATAAAAGACAAAGGACACTATGAAGGAGTTATCAGTGGATACGAGACATATGTAATAGATACTTTAAGGGAGGCAAATAGAAGGAAGAATGTAATAGATACCTTA

mRNA sequence

ATGGCAGTTTGGGACCCAACATATCCAAAGAAGGAGACTTGAGTGTCTTTCTTTTCAAAAATGAGTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAATGCAGTGATTCATAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACCATGGGAAGGTGTTAACTATACACCATTATTAGTTTTGTGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTATAAGACTTTGAATTTTTATACGATCTTGAAGACTGTCAAGGAAAAAAACGTCGAGTAGTATGTGCATGGAAGTCTGTGAGGAAGATAAAAGACAAAGGACACTATGAAGGAGTTATCAGTGGATACGAGACATATGTAATAGATACTTTAAGGGAGGCAAATAGAAGGAAGAATGTAATAGATACCTTA

Coding sequence (CDS)

ATGGCAGTTTGGGACCCAACATATCCAAAGAAGGAGACTTGAGTGTCTTTCTTTTCAAAAATGAGTTCTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTGAATGCAGTGATTCATAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACCATGGGAAGGTGTTAACTATACACCATTATTAGTTTTGTGTCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTATAAGACTTTGAATTTTTATACGATCTTGAAGACTGTCAAGGAAAAAAACGTCGAGTAGTATGTGCATGGAAGTCTGTGAGGAAGATAAAAGACAAAGGACACTATGAAGGAGTTATCAGTGGATACGAGACATATGTAATAGATACTTTAAGGGAGGCAAATAGAAGGAAGAATGTAATAGATACCTTA

Protein sequence

MAVWDPTYPKKET*VSFFSKMSSENVIWKAQWMPLNAVIHRCGDFHSVPLLGPWEGVNYTPLLVLCQVWLKQFIPPTHNL*DFEFLYDLEDCQGKKRRVVCAWKSVRKIKDKGHYEGVISGYETYVIDTLREANRRKNVIDTL

Homology

[Close]

BLAST of Chy12G206280 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.1e-62
Identity = 110/141 (78.01%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MAVWDPTYPKKET*VSFFSKMSSENVIWKAQWMPLNAVIHRCGDFHSVPLLGPWEGVNYT 60
           MAVWDPTYP+KE  +SFF+K++SENVIWKAQWMPL AVI+RCGDFHSVPLLGPW GVNYT
Sbjct: 266 MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 325

Query: 61  PLLVLCQVWLKQFIPPTHNL*DFEFLYDLEDCQGKKRRVVCAWKSVRKIKDKGHYEGVIS 120
           PLLVL QVWLKQFIPPTHNL + +F YD EDCQGKKR+ VCAWKS+RKIKDKGHYEGV S
Sbjct: 326 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTS 385

Query: 121 GYETYVIDTLREANRRKNVID 142
           GYE +      +ANRRKN+ID
Sbjct: 386 GYEAW------QANRRKNIID 400

[Close]

BLAST of Chy12G206280 vs. ExPASy TrEMBL
Match: A0A5D3CZ50 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.3e-61
Identity = 109/141 (77.30%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MAVWDPTYPKKET*VSFFSKMSSENVIWKAQWMPLNAVIHRCGDFHSVPLLGPWEGVNYT 60
           MAVWD TYP+KE  +SFF+K++SENVIWKAQWMPL AVI+RCGDFHSVPLLGPW GVNYT
Sbjct: 1   MAVWDQTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 60

Query: 61  PLLVLCQVWLKQFIPPTHNL*DFEFLYDLEDCQGKKRRVVCAWKSVRKIKDKGHYEGVIS 120
           PLLVL QVWLKQFIPPTHNL + +F YD EDCQGKKR+ VCAWKS+RKIKDKGHYEGV S
Sbjct: 61  PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTS 120

Query: 121 GYETYVIDTLREANRRKNVID 142
           GYE +      +ANRRKN+ID
Sbjct: 121 GYEAW------QANRRKNIID 135

[Close]

BLAST of Chy12G206280 vs. ExPASy TrEMBL
Match: A0A5A7TNJ1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.3e-61
Identity = 109/141 (77.30%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MAVWDPTYPKKET*VSFFSKMSSENVIWKAQWMPLNAVIHRCGDFHSVPLLGPWEGVNYT 60
           MAVWD TYP+KE  +SFF+K++SENVIWKAQWMPL AVI+RCGDFHSVPLLGPW GVNYT
Sbjct: 110 MAVWDQTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 169

Query: 61  PLLVLCQVWLKQFIPPTHNL*DFEFLYDLEDCQGKKRRVVCAWKSVRKIKDKGHYEGVIS 120
           PLLVL QVWLKQFIPPTHNL + +F YD EDCQGKKR+ VCAWKS+RKIKDKGHYEGV S
Sbjct: 170 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTS 229

Query: 121 GYETYVIDTLREANRRKNVID 142
           GYE +      +ANRRKN+ID
Sbjct: 230 GYEAW------QANRRKNIID 244

[Close]

BLAST of Chy12G206280 vs. ExPASy TrEMBL
Match: A0A5D3BYI1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 108/141 (76.60%), Postives = 121/141 (85.82%), Query Frame = 0


Query: 1   MAVWDPTYPKKET*VSFFSKMSSENVIWKAQWMPLNAVIHRCGDFHSVPLLGPWEGVNYT 60
           MAVWDPTYP+KE  +SFF+K++SENVIWKAQWMPL AVI+RCGDFHSVPLLGPW GVNYT
Sbjct: 77  MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 136

Query: 61  PLLVLCQVWLKQFIPPTHNL*DFEFLYDLEDCQGKKRRVVCAWKSVRKIKDKGHYEGVIS 120
           PLLVL QVWLKQFIPPTHNL + +F YD EDCQGKK + VC WKS+RKIKDKGHYEGV S
Sbjct: 137 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKCQAVCTWKSIRKIKDKGHYEGVTS 196

Query: 121 GYETYVIDTLREANRRKNVID 142
           GYE +      +ANRRKN+ID
Sbjct: 197 GYEAW------QANRRKNIID 211

[Close]

BLAST of Chy12G206280 vs. ExPASy TrEMBL
Match: A0A5D3CB80 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9127G00010 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.0e-59
Identity = 106/141 (75.18%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MAVWDPTYPKKET*VSFFSKMSSENVIWKAQWMPLNAVIHRCGDFHSVPLLGPWEGVNYT 60
           MAVWDPTYP+KE  +SFF+K++S+NV+WKAQWMPL AVI+RC DFHS+PLLGP  GVNYT
Sbjct: 1   MAVWDPTYPRKEAWLSFFAKLTSKNVVWKAQWMPLKAVIYRCRDFHSMPLLGPRGGVNYT 60

Query: 61  PLLVLCQVWLKQFIPPTHNL*DFEFLYDLEDCQGKKRRVVCAWKSVRKIKDKGHYEGVIS 120
           PLLVL QVWLKQFIPPTHNL + +F YD EDCQGKKR+ VCAWKS+RKIKDKGHYEGVIS
Sbjct: 61  PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVIS 120

Query: 121 GYETYVIDTLREANRRKNVID 142
           GYE +      +ANRRKN+ID
Sbjct: 121 GYEAW------QANRRKNIID 135

[Close]

BLAST of Chy12G206280 vs. NCBI nr
Match: TYK16558.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 242 bits (618), Expect = 1.44e-78
Identity = 109/141 (77.30%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MAVWDPTYPKKET*VSFFSKMSSENVIWKAQWMPLNAVIHRCGDFHSVPLLGPWEGVNYT 60
           MAVWD TYP+KE  +SFF+K++SENVIWKAQWMPL AVI+RCGDFHSVPLLGPW GVNYT
Sbjct: 1   MAVWDQTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 60

Query: 61  PLLVLCQVWLKQFIPPTHNL*DFEFLYDLEDCQGKKRRVVCAWKSVRKIKDKGHYEGVIS 120
           PLLVL QVWLKQFIPPTHNL + +F YD EDCQGKKR+ VCAWKS+RKIKDKGHYEGV S
Sbjct: 61  PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTS 120

Query: 121 GYETYVIDTLREANRRKNVID 141
           GYE +      +ANRRKN+ID
Sbjct: 121 GYEAW------QANRRKNIID 135

[Close]

BLAST of Chy12G206280 vs. NCBI nr
Match: KAA0046902.1 (girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 241 bits (614), Expect = 2.33e-78
Identity = 108/141 (76.60%), Postives = 121/141 (85.82%), Query Frame = 0


Query: 1   MAVWDPTYPKKET*VSFFSKMSSENVIWKAQWMPLNAVIHRCGDFHSVPLLGPWEGVNYT 60
           MAVWDPTYP+KE  +SFF+K++SENVIWKAQWMPL AVI+RCGDFHSVPLLGPW GVNYT
Sbjct: 77  MAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 136

Query: 61  PLLVLCQVWLKQFIPPTHNL*DFEFLYDLEDCQGKKRRVVCAWKSVRKIKDKGHYEGVIS 120
           PLLVL QVWLKQFIPPTHNL + +F YD EDCQGKK + VC WKS+RKIKDKGHYEGV S
Sbjct: 137 PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKCQAVCTWKSIRKIKDKGHYEGVTS 196

Query: 121 GYETYVIDTLREANRRKNVID 141
           GYE +      +ANRRKN+ID
Sbjct: 197 GYEAW------QANRRKNIID 211

[Close]

BLAST of Chy12G206280 vs. NCBI nr
Match: XP_031739496.1 (uncharacterized protein LOC116403043 [Cucumis sativus])

HSP 1 Score: 243 bits (621), Expect = 1.07e-77
Identity = 114/143 (79.72%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MAVWDPTYPKKET*VSFFSKMSSENVIWKAQWMPLNAVIHRCGDFHSVPLLGPWEGVNYT 60
           MAVW+PTYPKKET VSFFS +SSE+VIWKAQWMPL AVI+RCGDFHSVPLLGPW GVNYT
Sbjct: 116 MAVWNPTYPKKETWVSFFSTLSSEDVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 175

Query: 61  PLLVLCQVWLKQFIPPTHNL*DFEFLYDLEDCQGKKRRVVCAWKSVRKIKDKGHYEGVIS 120
           PLLVL QVWLKQFIPPTHNL D +F YD EDCQ KK R VCAWKSVRKIKDKGHYEGV S
Sbjct: 176 PLLVLRQVWLKQFIPPTHNLQDSDFAYDHEDCQRKKHRAVCAWKSVRKIKDKGHYEGVTS 235

Query: 121 GYETYVIDTLREANRRKNVIDTL 143
           GYE +      + NRRKNVI TL
Sbjct: 236 GYEAW------QTNRRKNVIYTL 252

[Close]

BLAST of Chy12G206280 vs. NCBI nr
Match: TYK07606.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 236 bits (601), Expect = 2.02e-77
Identity = 106/141 (75.18%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MAVWDPTYPKKET*VSFFSKMSSENVIWKAQWMPLNAVIHRCGDFHSVPLLGPWEGVNYT 60
           MAVWDPTYP+KE  +SFF+K++S+NV+WKAQWMPL AVI+RC DFHS+PLLGP  GVNYT
Sbjct: 1   MAVWDPTYPRKEAWLSFFAKLTSKNVVWKAQWMPLKAVIYRCRDFHSMPLLGPRGGVNYT 60

Query: 61  PLLVLCQVWLKQFIPPTHNL*DFEFLYDLEDCQGKKRRVVCAWKSVRKIKDKGHYEGVIS 120
           PLLVL QVWLKQFIPPTHNL + +F YD EDCQGKKR+ VCAWKS+RKIKDKGHYEGVIS
Sbjct: 61  PLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVIS 120

Query: 121 GYETYVIDTLREANRRKNVID 141
           GYE +      +ANRRKN+ID
Sbjct: 121 GYEAW------QANRRKNIID 135

[Close]

BLAST of Chy12G206280 vs. NCBI nr
Match: XP_031740432.1 (uncharacterized protein LOC116403430 [Cucumis sativus])

HSP 1 Score: 243 bits (621), Expect = 2.45e-77
Identity = 114/143 (79.72%), Postives = 121/143 (84.62%), Query Frame = 0


Query: 1   MAVWDPTYPKKET*VSFFSKMSSENVIWKAQWMPLNAVIHRCGDFHSVPLLGPWEGVNYT 60
           MAVW+PTYPKKET VSFFS +SSE+VIWKAQWMPL AVI+RCGDFHSVPLLGPW GVNYT
Sbjct: 115 MAVWNPTYPKKETWVSFFSTLSSEDVIWKAQWMPLKAVIYRCGDFHSVPLLGPWGGVNYT 174

Query: 61  PLLVLCQVWLKQFIPPTHNL*DFEFLYDLEDCQGKKRRVVCAWKSVRKIKDKGHYEGVIS 120
           PLLVL QVWLKQFIPPTHNL D +F YD EDCQ KK R VCAWKSVRKIKDKGHYEGV S
Sbjct: 175 PLLVLRQVWLKQFIPPTHNLQDSDFAYDHEDCQRKKHRAVCAWKSVRKIKDKGHYEGVTS 234

Query: 121 GYETYVIDTLREANRRKNVIDTL 143
           GYE +      + NRRKNVI TL
Sbjct: 235 GYEAW------QTNRRKNVIYTL 251

The following BLAST results are available for this feature:

BLAST of Chy12G206280 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G206280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5S7	5.1e-62	78.01	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=...	[more]
A0A5D3CZ50	4.3e-61	77.30	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE...	[more]
A0A5A7TNJ1	4.3e-61	77.30	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE...	[more]
A0A5D3BYI1	1.3e-60	76.60	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE...	[more]
A0A5D3CB80	4.0e-59	75.18	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9127G00010 P...	[more]

BLAST of Chy12G206280 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16558.1	1.44e-78	77.30	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0046902.1	2.33e-78	76.60	girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var...	[more]
XP_031739496.1	1.07e-77	79.72	uncharacterized protein LOC116403043 [Cucumis sativus]	[more]
TYK07606.1	2.02e-77	75.18	girdin-like [Cucumis melo var. makuwa]	[more]
XP_031740432.1	2.45e-77	79.72	uncharacterized protein LOC116403430 [Cucumis sativus]	[more]

BLAST of Chy12G206280 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48200	PROTEIN, PUTATIVE-RELATED	coord: 18..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G206280.1	Chy12G206280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding