Chy11G199390 (gene) Cucumber (hystrix) v1

Overview
NameChy11G199390
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH11: 19882860 .. 19885483 (-)
RNA-Seq ExpressionChy11G199390
SyntenyChy11G199390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGGGTAAGTTAATGGTTATTGTATCGCATCTATATATATGTGACTTGCTTTTAAGTAAGTGGATATGAATGTGTGTGTGCTTATTTGTTTCTTAGGAAGAGTCCGATATATATGTGACTGGCTCATGGAATTTTTTTGTTTGGGGCCCTACTGCATTGGGATATGGATCTTCTTGCAATCAAATAACTGTCGAAGGTAATTCTTTGCTTGCGTCCTTGAGGTTTTATTTTGTCAATATTGTGTGGTTTGTTCATGTTCGTATACACGACAAATTGTCAATTGTTAATTCTACTTGGTTCACTAGCTTTGACTATTTAATGTATGGATTGAGGATTGGAGATGTAGGTTTTAGCATTATGCATATCTGTGTAATTGGTGTTTTTATTATAATTGAGATAGGGTTGGTGTTGTGTATGAAAAAGAACTGAAAATATAAGTGAGCTAGGCTTGTGAAGGCTCACACTTTTTAACATTTTATTTGGTTTATACTTACTTTATTAGTGTCTTAGAAGTTGGTATCTTTAATTTTTGTTCTAGCATGGATGGGCCCTAGTTTGGATCTTAGTTTGAATCAGCTCACAAAATAGTGTCATGTATCAAGTAGTGCTAGTTAGGCTTAGACAAAAAAATGATATAAAGCACTGTTTCATCCTTCTTCACTCCCTGTAGCAATGGTTATTTTGCATGTTTGGTTTTTTCAGTACTGCGGTCTTCCAAAATATGGATAGCTTGGTCATGGAACAGATAATGAGGTACTATACAACTTTTTCTTCTATTCCTTTTAATTTGTACTGAACAAATGGAGAATCTTACAAGGGTATACTTTGTCACGTGGCACATGGGATAATGTTGGGCACTTCATTCCAGTAACAAGCTCTAGGCCTAAATTGCCGCAAGCCAGCAATGAATGGTACGTTGATACAGGTATGTTTTGACACGAACACCTTCAGTTGCCCAATCTTCTGCATTCCACAAACTGGTATATATTCTCATTCATTGCTTGTTAGGAAAAGCTATTCCTTGATTATCGTAGTTGCGCAAAACTCTGATTGGGGTGCAATTTGGCTGACTGCATTTCAGGCATTTTTTTGTTGTTCATGAACCTGAGTACTTGCTCTAATCTTACTCTCTGTTTTAATAATCTGAGAGAATTGGTGCATGATTATTCATAGTTCATCTTTATTTGCGATGATTGCCTAATACAAACTGTTGAACTTTAAGGACTAGGAATTGTCTTAGGTATATTGTCTTAGCTTTTTTGTTGTAAGGACTAGGAATAAGGATATATTTGTGATATTGGCTTTCCATTTTTCACTCTTTGATGATTTGTCATTATTCAATTTAGTGGTTATATATGCTAAAACAAACTGTTGAATTGTTGCTTTACGAAACAAGATAAATACTTGAAAACAACCGATTGATGCTTCTTCTCTCCTCTTGTGTGTGTGTTTTAAATAAATTGCTTCCACTTAGAAAATTCTTCATTTGATACAACTTTTGGGAAAATTTTAATTGATTTTCAACCCCTTTGTCAACTATTCTAGTATTAGGCATATTGGTTTCACACTGACCAGTTGTCATGACTCACTAGTTTGAGAGAGTGGTTTCTGTGTTTCCACCGCTTAAATACCAACAATATACCTGCTAGGCTGCTAGGCTGCTACAATTATTTTCCCTCTCTTACACTTTCTAGCATGATTATTGCGACATATTGGTTAGATTTCTATTTCATCTAACTTCAATGGCCCCTTCTTAGTTAATGTCGTTCATATTAGAGGATTAAGAGTAATAGATACCTTTTTTTTATCATGGATAGTATGCTTGTACCGGTTGGCTATTGCTAAATTGCTACTTGTGTAAATTGCCATGGGTGTTATGTCTGTACTTATTGCTATTGCTCAATTGCTACTTGTGTAAATTGTCATGGGTTTTATGTTTGTATTCATTGGTAGAACATTTTTTGGATAAGAAACTAGGAGACCTTTAATTTCTGTCAAGCCATAAATGATACAAGTTGTTCTAGTTCCATTTTCCTAGTACCTTAATATTTCTTGGCTTCGTTAACTGAAGTGAATTGCACATGAAAACTGTCTTTTTTCTGATATTTGTAAATTAGAAAGTGTTTGACTCCTTAAGATGGAAACTTTTCGGTTCTTGTTGGATAACATATCTTCCAACCTTATTAACAGTGAACTACTAATGGATTCTTAAGTTTCATTCATCTTTATTATTACTTATGATTACTAATTCAATAATTTCCTTGTAGATTACTTATTTATATCTAGCTAAATTTTCTAAAGAGTAATGATACAAGAGTTGTAATTTGTAAAAAGTTCCAATATTGTAGACCAAGTGGATGTTAAGGTGACGCTGTTATTCTACATTTGTGCTCTGCTACGTAGTTGTTTCTCTTATCGACGCATGTAGTGATAGGTAATGCTCAATGTTGAAATTTTCTATAAAAGTTGTACTCTCTTGTCCTGTGATGGATGCTTATATTCATGTTGTCTTTGTAGGTTCAACTGGAGTCGACAACTTCATGAGTTTACTTTCAAAGAACATTTTCAGAGACGAACATTCTCGGTTGGTCGTTTATGCTTTAGCAGAAAATCTTGTTG

mRNA sequence

ATGAAAGGGGAAGAGTCCGATATATATGTGACTGGCTCATGGAATTTTTTTGTTTGGGGCCCTACTGCATTGGGATATGGATCTTCTTGCAATCAAATAACTGTCGAAGTACTGCGGTCTTCCAAAATATGGATAGCTTGGTCATGGAACAGATGGGATAATGTTGGGCACTTCATTCCAGTAACAAGCTCTAGGCCTAAATTGCCGCAAGCCAGCAATGAATGGTTCAACTGGAGTCGACAACTTCATGAGTTTACTTTCAAAGAACATTTTCAGAGACGAACATTCTCGGTTGGTCGTTTATGCTTTAGCAGAAAATCTTGTTG

Coding sequence (CDS)

ATGAAAGGGGAAGAGTCCGATATATATGTGACTGGCTCATGGAATTTTTTTGTTTGGGGCCCTACTGCATTGGGATATGGATCTTCTTGCAATCAAATAACTGTCGAAGTACTGCGGTCTTCCAAAATATGGATAGCTTGGTCATGGAACAGATGGGATAATGTTGGGCACTTCATTCCAGTAACAAGCTCTAGGCCTAAATTGCCGCAAGCCAGCAATGAATGGTTCAACTGGAGTCGACAACTTCATGAGTTTACTTTCAAAGAACATTTTCAGAGACGAACATTCTCGGTTGGTCGTTTATGCTTTAGCAGAAAATCTTGTTG

Protein sequence

MKGEESDIYVTGSWNFFVWGPTALGYGSSCNQITVEVLRSSKIWIAWSWNRWDNVGHFIPVTSSRPKLPQASNEWFNWSRQLHEFTFKEHFQRRTFSVGRLCFSRKSCX
Homology
[Close]
BLAST of Chy11G199390 vs. NCBI nr
Match: KAE8653080.1 (hypothetical protein Csa_019651 [Cucumis sativus])

HSP 1 Score: 180 bits (457), Expect = 1.56e-56
Identity = 84/108 (77.78%), Postives = 88/108 (81.48%), Query Frame = 0 

Query: 1   MKGEESDIYVTGSWNFFVWGPTALGYGSSCNQITVEVLRSSKIWIAWSWNRWDNVGHFIP 60
           MKGEE DIYVTGSWNF +W  TALGY SSCNQI VEVLR SKIW A S+  WDN GHFI 
Sbjct: 1   MKGEEFDIYVTGSWNFVIWCHTALGYESSCNQIIVEVLRFSKIWTALSYT-WDNAGHFIQ 60

Query: 61  VTSSRPKLPQASNEWFNWSRQLHEFTFKEHFQRRTFSVGRLCFSRKSC 108
           V   RP LPQ +NEWFNWSRQLHEF+FKEHFQRRTFSVGRLCF  KSC
Sbjct: 61  VRRYRPTLPQINNEWFNWSRQLHEFSFKEHFQRRTFSVGRLCFCSKSC 107

[Close]
BLAST of Chy11G199390 vs. NCBI nr
Match: XP_031737718.1 (uncharacterized protein LOC116402502 [Cucumis sativus])

HSP 1 Score: 116 bits (291), Expect = 5.00e-31
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 0 

Query: 1  MKGEESDIYVTGSWNFFVWGPTALGYGSSCNQITVEVLRSSKIWIAWSWNRWDNVGHFIP 60
          MKGEE DIYVTGSWNF +W  TALGY SSCNQI VEVLR SKIW A S+  WDN GHFI 
Sbjct: 1  MKGEEFDIYVTGSWNFVIWCHTALGYESSCNQIIVEVLRFSKIWTALSYT-WDNAGHFIQ 60

Query: 61 VTSSRPKLPQASNEWF 76
          V   RP LPQ +NEW+
Sbjct: 61 VRRYRPTLPQINNEWY 75

[Close]
BLAST of Chy11G199390 vs. NCBI nr
Match: XP_031745058.1 (uncharacterized protein LOC101222116 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 3.60e-09
Identity = 28/33 (84.85%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 76  FNWSRQLHEFTFKEHFQRRTFSVGRLCFSRKSC 108
           FNWSR LHEF FKEHFQRRTFSV RLCF RK C
Sbjct: 176 FNWSRPLHEFIFKEHFQRRTFSVCRLCFYRKFC 208

The following BLAST results are available for this feature:
BLAST of Chy11G199390 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G199390 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G199390 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653080.11.56e-5677.78hypothetical protein Csa_019651 [Cucumis sativus][more]
XP_031737718.15.00e-3171.05uncharacterized protein LOC116402502 [Cucumis sativus][more]
XP_031745058.13.60e-0984.85uncharacterized protein LOC101222116 [Cucumis sativus][more]
BLAST of Chy11G199390 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G199390.1Chy11G199390.1mRNA