Chy10G181210 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G181210
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	AD domain-containing protein
Location	chrH10: 14914281 .. 14915749 (+)
RNA-Seq Expression	Chy10G181210
Synteny	Chy10G181210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTTCATTTCTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCAGTTTCCGTTATCTTGAATTCCTTGACTGTTTCTTCCTTCTGTTGTTATTTTTGTGCTTTGGATACAGGAGGGTTCAAAGCCAGGACCTCGCAGGAACATAAGGCTGTTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGTGAAGATCCTCTTGATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTTGCCATTAGGTTTTGGTTTTGTTTTTCGATAACCTATTATTTCCTCTACCTTTGGTTGTTGGGTTTAATTGATTTTTTCTAGGCAAGCTGAGGCTGAGGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCTCTATCTAAAACGTAAGGAATTCTTTTATGGTTTTCTTTTATGGTTTTGAAGCCTTTAATAATGCCATATCAACCCTTGGATATTTCCATCTAGAAATTCAAGCACTTTTATCATGTTAAAGTGAAAATTGGATCCTAAAAGGAATAAGGAGGATTAGGTAATTGGAACATAATAGACCGCTATTAGATATTTTGAACATAATAGACCGCTATTAGATATTTTGAACATAATAGACGACGGCCTGAGAAGGCTAATTCACAATGTTTGTCGTCCGAAGCTGTTTTTTAACATTTATCTATTTATTTTTATCATTCTCCGTTTTAAAAAAAATGAATATATTAGTTTATAATTAAATTCAGTAATTTTAAGAACTTCTCTATTCTATGGTAAAATTATTGTATTTGCATCTGTACTGTATGAAAATGAGATGTATCTGCTTTTTGTTATTAGAAATTACTGGGTTGCAAACCCAAGTATGTTCATTGGATTATCTCATTTTATGCTACCTGAATGAGACCCAAAGTGATAGAATTCCATCTTGAAGTTTGTAATATAATTTTTCTACCTTACATTTTTACTAACATCATTAGGCTTCCTGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTGAGCAGTCCTTACCTACCCGAATCTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGCGTGAAGAAAGTGGTATGAATGTTCAATAAATATTGAAAAGCTTGTGGATGGATATATGTTTTTCATTTCTTTCTTTGTGATGCCTTACACAAACTGACCTTAAACTTATCAATGTATAAATATTGATGTATTTTTTTCTAAAAGCTTGAATGGGAGAGGAAGCGATTGCAAGTTCGTGGCGGTGGTCAGTGA

mRNA sequence

ATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGAGGGTTCAAAGCCAGGACCTCGCAGGAACATAAGGCTGTTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGTGAAGATCCTCTTGATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTTGCCATTAGGCAAGCTGAGGCTGAGGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCTCTATCTAAAACGCTTCCTGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTGAGCAGTCCTTACCTACCCGAATCTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGCGTGAAGAAAGTGCTTGAATGGGAGAGGAAGCGATTGCAAGTTCGTGGCGGTGGTCAGTGA

Coding sequence (CDS)

ATGGCACTGGACGGTAGCGGCAATGGAGATGACTTCTCTGTAGGATCTTTCTTCTCCATTAAGACCACCTTAGGAGATGAATTTCAAGGACAAGAGGGTTCAAAGCCAGGACCTCGCAGGAACATAAGGCTGTTGAAGGCCAATTATATTAAGGAATTTTCGTTTTTGGGACATGGTGAAGATCCTCTTGATCTCAAAAACTGTTACCTCGATCTCAATACTCTCCGTGCCCGAGAAGAACTTGCCATTAGGCAAGCTGAGGCTGAGGCGGAGAGGATAGGAGTGGGTGTCACTAGCGAGGCTCAAAGTATTTTTGATGCTCTATCTAAAACGCTTCCTGTTCGTTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTGAGCAGTCCTTACCTACCCGAATCTGTTTCCGGAGGCACCCCTGCTGCCAATGAGCGCGTGAAGAAAGTGCTTGAATGGGAGAGGAAGCGATTGCAAGTTCGTGGCGGTGGTCAGTGA

Protein sequence

MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGGQ*

Homology

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BLAST of Chy10G181210 vs. ExPASy Swiss-Prot
Match: Q6PBA2 (Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.7e-09
Identity = 47/166 (28.31%), Postives = 77/166 (46.39%), Query Frame = 0


Query: 7   GNGDDFSVGSFFSIKTTLGDEFQGQEGSKPGPRR----------------NIRLLKANYI 66
           G G+ FSVGS  S  T LG   QG+  +   P +                ++ L+   Y+
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPSSSGKPNLSDVILINLAYV 64

Query: 67  KEFSFLG-HGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 126
            E   +    E P  L +  +     RAR E   + ++A A  I  GV+ E Q +F  + 
Sbjct: 65  SEVDIINDRTETPPPLASLNISKLANRARTEKEDKLSQAYA--ISAGVSIEGQQLFQTIH 124

Query: 127 KTL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 155
           KT+   +W +  I+VM++V +S PY  E+  G   +A   ++K++E
Sbjct: 125 KTIKDCKWQEKNIIVMDDVVISPPYQVENCKGKEGSALSHIRKIVE 168

[Close]

BLAST of Chy10G181210 vs. ExPASy Swiss-Prot
Match: Q6NSN1 (Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-08
Identity = 46/166 (27.71%), Postives = 76/166 (45.78%), Query Frame = 0


Query: 7   GNGDDFSVGSFFSIKTTLGDEFQGQEGSKPGPRR----------------NIRLLKANYI 66
           G G+ FSVGS  S  T LG   QG+  +   P +                ++ L+   Y+
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCAPSSGKPNLSDVMLVNLAYV 64

Query: 67  KEFSFL-GHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 126
            E   +    E P  L +   +    RAR E   + + A A  +  GV+ E Q +F  + 
Sbjct: 65  SEVDIITDRAETPPPLASLNFNKLVNRARAEKEDKLSLAYA--VSAGVSVEGQQLFQTIH 124

Query: 127 KTL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 155
           KT+   +W +  I+VM++V +S PY  ++  G   +A   V+K++E
Sbjct: 125 KTIKECKWQEKNIIVMDDVVISPPYQVDNCKGKEGSALSHVRKIVE 168

[Close]

BLAST of Chy10G181210 vs. ExPASy Swiss-Prot
Match: Q0VCF9 (Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 47/165 (28.48%), Postives = 73/165 (44.24%), Query Frame = 0


Query: 9   GDDFSVGSFFSIKTTLGDEFQGQ-----------------EGSKPGPRRNIRLLKANYIK 68
           G+ FSVGS  S +T      QG+                    KP    +I L+   Y+ 
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPN-HADILLINLQYVS 65

Query: 69  EFSFLG-HGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSK 128
           E   +    E P  L +  +     +AR E   + ++A A  I  GV+ E Q +F  + K
Sbjct: 66  EVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYA--ISAGVSLEGQQLFQTIHK 125

Query: 129 TL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 155
           T+   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 126 TIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167

[Close]

BLAST of Chy10G181210 vs. ExPASy Swiss-Prot
Match: Q3MHD2 (Protein LSM12 homolog OS=Homo sapiens OX=9606 GN=LSM12 PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 47/165 (28.48%), Postives = 73/165 (44.24%), Query Frame = 0


Query: 9   GDDFSVGSFFSIKTTLGDEFQGQ-----------------EGSKPGPRRNIRLLKANYIK 68
           G+ FSVGS  S +T      QG+                    KP    +I L+   Y+ 
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPN-HADILLINLQYVS 65

Query: 69  EFSFLG-HGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSK 128
           E   +    E P  L +  +     +AR E   + ++A A  I  GV+ E Q +F  + K
Sbjct: 66  EVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYA--ISAGVSLEGQQLFQTIHK 125

Query: 129 TL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 155
           T+   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 126 TIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167

[Close]

BLAST of Chy10G181210 vs. ExPASy Swiss-Prot
Match: Q9D0R8 (Protein LSM12 homolog OS=Mus musculus OX=10090 GN=Lsm12 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 47/165 (28.48%), Postives = 73/165 (44.24%), Query Frame = 0


Query: 9   GDDFSVGSFFSIKTTLGDEFQGQ-----------------EGSKPGPRRNIRLLKANYIK 68
           G+ FSVGS  S +T      QG+                    KP    +I L+   Y+ 
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPN-HADILLINLQYVS 65

Query: 69  EFSFLG-HGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSK 128
           E   +    E P  L +  +     +AR E   + ++A A  I  GV+ E Q +F  + K
Sbjct: 66  EVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYA--ISAGVSLEGQQLFQTIHK 125

Query: 129 TL-PVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE 155
           T+   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 126 TIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167

[Close]

BLAST of Chy10G181210 vs. ExPASy TrEMBL
Match: A0A0A0KQA9 (AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.9e-85
Identity = 167/181 (92.27%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLK 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQG              QEGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 168
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180

[Close]

BLAST of Chy10G181210 vs. ExPASy TrEMBL
Match: A0A5A7SWT7 (Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003390 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.0e-82
Identity = 162/176 (92.05%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANY 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQ           EGSKPGPRRNIRLLKANY
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPRRNIRLLKANY 60

Query: 61  IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 120
           IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS
Sbjct: 61  IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 120

Query: 121 KTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGG 166
           KTLPVRWDKTVIVVMNEVRV+SPYLP+SVSGGTPAANERVKKVLE ERKRLQVRGG
Sbjct: 121 KTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLELERKRLQVRGG 176

[Close]

BLAST of Chy10G181210 vs. ExPASy TrEMBL
Match: A0A5D3CUL6 (Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00770 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.0e-81
Identity = 161/175 (92.00%), Postives = 163/175 (93.14%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANY 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQ           EGSKPGPRRNIRLLKANY
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPRRNIRLLKANY 60

Query: 61  IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 120
           IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS
Sbjct: 61  IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 120

Query: 121 KTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRG 165
           KTLPVRWDKTVIVVMNEVRV+SPYLP+SVSGGTPAANERVKKVLE ERKRLQVRG
Sbjct: 121 KTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLELERKRLQVRG 175

[Close]

BLAST of Chy10G181210 vs. ExPASy TrEMBL
Match: A0A6J1DDK3 (protein LSM12 homolog OS=Momordica charantia OX=3673 GN=LOC111019118 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.4e-80
Identity = 159/181 (87.85%), Postives = 163/181 (90.06%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLK 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQG              QEGSKPGP RNIRLLK
Sbjct: 1   MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPHRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEF+FLGHGEDPLDLK CYLDLN+LRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 168
           ALSKTLPVRWDKTVIVVMNEVRVSSPYL ESV+GGTPAANERVKKVLE ERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKVLELERKRLQVRGGG 180

[Close]

BLAST of Chy10G181210 vs. ExPASy TrEMBL
Match: A0A6J1GZX6 (protein LSM12 homolog A OS=Cucurbita moschata OX=3662 GN=LOC111458358 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.4e-80
Identity = 162/180 (90.00%), Postives = 162/180 (90.00%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLK 60
           MALD SGNGDDFSVGSFFSIKTTLGDEFQ               QEGSKPGPRRNIRLLK
Sbjct: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAE EAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEIEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 167
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE ERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGG 179

[Close]

BLAST of Chy10G181210 vs. NCBI nr
Match: KGN52415.2 (hypothetical protein Csa_008581 [Cucumis sativus])

HSP 1 Score: 327 bits (839), Expect = 1.06e-112
Identity = 167/178 (93.82%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANY 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQ           EGSKPGPRRNIRLLKANY
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPRRNIRLLKANY 60

Query: 61  IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 120
           IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS
Sbjct: 61  IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 120

Query: 121 KTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGGQ 167
           KTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGGQ
Sbjct: 121 KTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGGQ 178

[Close]

BLAST of Chy10G181210 vs. NCBI nr
Match: XP_004135229.1 (protein LSM12 homolog A [Cucumis sativus])

HSP 1 Score: 326 bits (836), Expect = 3.38e-112
Identity = 167/181 (92.27%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQ--------------EGSKPGPRRNIRLLK 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQ              EGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 167
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180

[Close]

BLAST of Chy10G181210 vs. NCBI nr
Match: XP_038892233.1 (protein LSM12 homolog A-like [Benincasa hispida])

HSP 1 Score: 319 bits (817), Expect = 2.66e-109
Identity = 165/181 (91.16%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQ--------------EGSKPGPRRNIRLLK 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQ              EGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 167
           ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE ERKRLQVRG G
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGSG 180

[Close]

BLAST of Chy10G181210 vs. NCBI nr
Match: KAG6601368.1 (Protein LSM12-like A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 318 bits (815), Expect = 3.30e-109
Identity = 162/166 (97.59%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQEGSKPGPRRNIRLLKANYIKEFSFLGHGE 60
           MALD SGNGDDFSVGSFFSIKTTLGDEFQ QEGSKPGPRRNIRLLKANYIKEFSFLGHGE
Sbjct: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQEGSKPGPRRNIRLLKANYIKEFSFLGHGE 60

Query: 61  DPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTV 120
           DPLDLKNCYLDLNTLRAREELAIRQAE EAERIGVGVTSEAQSIFDALSKTLPVRWDKTV
Sbjct: 61  DPLDLKNCYLDLNTLRAREELAIRQAEIEAERIGVGVTSEAQSIFDALSKTLPVRWDKTV 120

Query: 121 IVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 166
           IVVMNEVRVSSPYLPESVSGGTPAANERVKKVLE ERKRLQVRGGG
Sbjct: 121 IVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGG 165

[Close]

BLAST of Chy10G181210 vs. NCBI nr
Match: KAA0034336.1 (protein LSM12-like protein A [Cucumis melo var. makuwa])

HSP 1 Score: 316 bits (809), Expect = 3.84e-108
Identity = 162/176 (92.05%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANY 60
           MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQ           EGSKPGPRRNIRLLKANY
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPRRNIRLLKANY 60

Query: 61  IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 120
           IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS
Sbjct: 61  IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 120

Query: 121 KTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGG 165
           KTLPVRWDKTVIVVMNEVRV+SPYLP+SVSGGTPAANERVKKVLE ERKRLQVRGG
Sbjct: 121 KTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLELERKRLQVRGG 176

[Close]

BLAST of Chy10G181210 vs. TAIR 10
Match: AT1G24050.1 (RNA-processing, Lsm domain )

HSP 1 Score: 186.0 bits (471), Expect = 2.4e-47
Identity = 100/174 (57.47%), Postives = 126/174 (72.41%), Query Frame = 0


Query: 7   GNGDDFSVGSFFSIKTTLGDEFQG--------------QEGSKPGP--RRNIRLLKANYI 66
           G G+ F+VG+ +S+K   GDEF+G              +EG+KP P   +N R++ A++I
Sbjct: 14  GEGEKFAVGNIYSVKVITGDEFRGIVMAYDPIPNFVFFEEGTKPRPGHLKNTRMVNASFI 73

Query: 67  KEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSK 126
              S+LG  EDPLD  N  +DLN LRA+E LAIRQAEA+AER+GVGVT+EAQSIFDALSK
Sbjct: 74  TGLSYLGKTEDPLDSDNFSVDLNGLRAKEALAIRQAEADAERMGVGVTAEAQSIFDALSK 133

Query: 127 TLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRG 165
           TLPV+W+ + I+VM EVRV SPYL + V GGT AAN RVKKVLE ER+RLQ+ G
Sbjct: 134 TLPVQWENSDILVMKEVRVRSPYLSDCVFGGTDAANNRVKKVLELERRRLQLFG 187

[Close]

BLAST of Chy10G181210 vs. TAIR 10
Match: AT1G70220.1 (RNA-processing, Lsm domain )

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-23
Identity = 72/216 (33.33%), Postives = 102/216 (47.22%), Query Frame = 0


Query: 3   LDGSGNGDDFSVGSFFSIKTTLGDEFQG-------------------------------- 62
           +D  G  + F VG  +++K T GD+F G                                
Sbjct: 11  VDSGGEDEKFEVGKVYAVKLTTGDQFNGIVLAYDSEPNFAVFDILFRNRYSQLVDSYLCY 70

Query: 63  ----------------------QEGSKPGP--RRNIRLLKANYIKEFSFLGHGEDPLDLK 122
                                 QEG+KP P   +++R++  NYI E   LG  ++ L  K
Sbjct: 71  FAFLISSSCVCFRVFLDGLVILQEGTKPKPLDSKSLRMVNVNYITEMKNLGRVKERL-AK 130

Query: 123 NCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNE 163
           N  ++L+ L  +E  AI    +  E+IG GVT+E Q IFDA+SKTLP+RW    ++VM +
Sbjct: 131 NTLVNLDGLIEKENHAI----SNVEKIGFGVTAEGQMIFDAISKTLPIRWVNKEMLVMGD 190

The following BLAST results are available for this feature:

BLAST of Chy10G181210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBA2	5.7e-09	28.31	Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1	[more]
Q6NSN1	3.7e-08	27.71	Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1	[more]
Q0VCF9	1.8e-07	28.48	Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2	[more]
Q3MHD2	1.8e-07	28.48	Protein LSM12 homolog OS=Homo sapiens OX=9606 GN=LSM12 PE=1 SV=2	[more]
Q9D0R8	1.8e-07	28.48	Protein LSM12 homolog OS=Mus musculus OX=10090 GN=Lsm12 PE=1 SV=1	[more]

BLAST of Chy10G181210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQA9	3.9e-85	92.27	AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=...	[more]
A0A5A7SWT7	4.0e-82	92.05	Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3CUL6	2.0e-81	92.00	Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1DDK3	6.4e-80	87.85	protein LSM12 homolog OS=Momordica charantia OX=3673 GN=LOC111019118 PE=3 SV=1	[more]
A0A6J1GZX6	6.4e-80	90.00	protein LSM12 homolog A OS=Cucurbita moschata OX=3662 GN=LOC111458358 PE=3 SV=1	[more]

BLAST of Chy10G181210 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52415.2	1.06e-112	93.82	hypothetical protein Csa_008581 [Cucumis sativus]	[more]
XP_004135229.1	3.38e-112	92.27	protein LSM12 homolog A [Cucumis sativus]	[more]
XP_038892233.1	2.66e-109	91.16	protein LSM12 homolog A-like [Benincasa hispida]	[more]
KAG6601368.1	3.30e-109	97.59	Protein LSM12-like A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAA0034336.1	3.84e-108	92.05	protein LSM12-like protein A [Cucumis melo var. makuwa]	[more]

BLAST of Chy10G181210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24050.1	2.4e-47	57.47	RNA-processing, Lsm domain	[more]
AT1G70220.1	2.4e-23	33.33	RNA-processing, Lsm domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019181	Anticodon-binding domain	SMART	SM00995	AD_2	coord: 66..152 e-value: 7.4E-33 score: 125.2
IPR019181	Anticodon-binding domain	PFAM	PF09793	AD	coord: 70..152 e-value: 7.2E-24 score: 83.7
IPR039683	Protein Lsm12-like	PANTHER	PTHR13542	LSM12 HOMOLOG	coord: 7..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G181210.1	Chy10G181210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030574	collagen catabolic process
biological_process	GO:0030198	extracellular matrix organization
biological_process	GO:0006508	proteolysis
cellular_component	GO:0031012	extracellular matrix
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008270	zinc ion binding