Chy10G176260 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G176260
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Girdin-like
Location	chrH10: 10321037 .. 10321679 (-)
RNA-Seq Expression	Chy10G176260
Synteny	Chy10G176260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGCTCGAAAAGACCAAAGGTTTCTTAAGAAATCAAGATAAGTTAGAAAAACATCTTAAAGTGTTAGATAAAGAGATGAGTCGAATGAATAAAGCAAATAGAAGCTTGAAAAATGAAAAGACAACATTATAGGCTACAATAAAATCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTATCGCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAGCGGAAAGCACAGATAGTAGATTTGGAAGCACACAACCGCTCTCTACGTCAAACTGTTGATAGCCTACATGTGAAGATGGTCGAGTACTCTGAAGAGTATAAGATACTGAAAAATTCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGTAAGAATACTAGTTATTGAAGATAGATTACATGCAAATGAAGGTTGATTATGATTTGCAAAGGAGAGATTTCCAGGTGTTAGTTGAACGTGTAGATTAAACGATTGGATTTCTTAGAATAATGTCTAGAAAAGCAAATGGTTTGTAGAATGGACAGCTGATTTAAGGACTAATCTTTTCTTAATAAAACCTCATGCAGATGATTTGAATAGATTCTTAAAGATGATATGCAGAGAACTTGGGCAT

mRNA sequence

AAAAAGCTCGAAAAGACCAAAGGTTTCTTAAGAAATCAAGATAAGTTAGAAAAACATCTTAAAGTGTTAGATAAAGAGATGAGTCGAATGAATAAAGCAAATAGAAGCTTGAAAAATGAAAAGACAACATTATAGGCTACAATAAAATCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTATCGCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAGCGGAAAGCACAGATAGTAGATTTGGAAGCACACAACCGCTCTCTACGTCAAACTGTTGATAGCCTACATGTGAAGATGGTCGAGTACTCTGAAGAGTATAAGATACTGAAAAATTCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGTAAGAATACTAGTTATTGAAGATAGATTACATGCAAATGAAGGTTGATTATGATTTGCAAAGGAGAGATTTCCAGGTGTTAGTTGAACGTGTAGATTAAACGATTGGATTTCTTAGAATAATGTCTAGAAAAGCAAATGGTTTGTAGAATGGACAGCTGATTTAAGGACTAATCTTTTCTTAATAAAACCTCATGCAGATGATTTGAATAGATTCTTAAAGATGATATGCAGAGAACTTGGGCAT

Coding sequence (CDS)

AAAAAGCTCGAAAAGACCAAAGGTTTCTTAAGAAATCAAGATAAGTTAGAAAAACATCTTAAAGTGTTAGATAAAGAGATGAGTCGAATGAATAAAGCAAATAGAAGCTTGAAAAATGAAAAGACAACATTATAGGCTACAATAAAATCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTATCGCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAGCGGAAAGCACAGATAGTAGATTTGGAAGCACACAACCGCTCTCTACGTCAAACTGTTGATAGCCTACATGTGAAGATGGTCGAGTACTCTGAAGAGTATAAGATACTGAAAAATTCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTGAGAGGATAGTGTAAGAATACTAGTTATTGAAGATAGATTACATGCAAATGAAGGTTGATTATGATTTGCAAAGGAGAGATTTCCAGGTGTTAGTTGAACGTGTAGATTAAACGATTGGATTTCTTAGAATAATGTCTAGAAAAGCAAATGGTTTGTAGAATGGACAGCTGATTTAAGGACTAATCTTTTCTTAATAAAACCTCATGCAGATGATTTGAATAGATTCTTAAAGATGATATGCAGAGAACTTGGGCAT

Protein sequence

KKLEKTKGFLRNQDKLEKHLKVLDKEMSRMNKANRSLKNEKTTL*ATIKSQDEYIKDLESGKEYYRELVNDLNTSIGKRKAQIVDLEAHNRSLRQTVDSLHVKMVEYSEEYKILKNSYTINLLHFKIQVRG*CKNTSY*R*ITCK*RLIMICKGEISRC*LNV*IKRLDFLE*CLEKQMVCRMDS*FKD*SFLNKTSCR*FE*ILKDDMQRTWAX

Homology

[Close]

BLAST of Chy10G176260 vs. ExPASy TrEMBL
Match: A0A5A7VFL0 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.5e-44
Identity = 103/133 (77.44%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 2   KLEKTKGFLRNQDKLEKHLKVLDKEMSRMNKANRSLKNEKTTL*ATIKSQDEYIKDLESG 61
           +LEKTK FL+NQDKLEK L+ LDKEM RMNKANRSLKNEKTTL AT+ SQDEYIKDLE+G
Sbjct: 373 ELEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATMGSQDEYIKDLENG 432

Query: 62  KEYYRELVNDLNTSIGKRKAQIVDLEAHNRSLRQTVDSLHVKMVEYSEEYKILK---NSY 121
           KEY+ E VNDLNTSIGKR+ QI+DLEA N SLRQTVDSLH+KM E SEEY+ILK     Y
Sbjct: 433 KEYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKIMPIPY 492

Query: 122 TINLLHFKIQVRG 132
           TINLLHFKIQ  G
Sbjct: 493 TINLLHFKIQAGG 505

[Close]

BLAST of Chy10G176260 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 3.7e-40
Identity = 92/126 (73.02%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 2   KLEKTKGFLRNQDKLEKHLKVLDKEMSRMNKANRSLKNEKTTL*ATIKSQDEYIKDLESG 61
           +LEKTK FL+NQDKLEK L+  DKEM RMNKANRSLKNEKTTL AT+ S+DEYIKDLE+G
Sbjct: 152 ELEKTKSFLKNQDKLEKDLETSDKEMRRMNKANRSLKNEKTTLQATVGSEDEYIKDLENG 211

Query: 62  KEYYRELVNDLNTSIGKRKAQIVDLEAHNRSLRQTVDSLHVKMVEYSEEYKILKNSYTIN 121
           KEY+ ELVNDLNTSIGKR+ QI+DLEA N SLRQTVD+LH+KM E SEEY+ILKN   ++
Sbjct: 212 KEYFLELVNDLNTSIGKRETQIMDLEAQNHSLRQTVDNLHLKMAERSEEYEILKN--YVD 271

Query: 122 LLHFKI 128
            LH+++
Sbjct: 272 SLHYQL 275

[Close]

BLAST of Chy10G176260 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 3.7e-40
Identity = 92/126 (73.02%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 2   KLEKTKGFLRNQDKLEKHLKVLDKEMSRMNKANRSLKNEKTTL*ATIKSQDEYIKDLESG 61
           +LEKTK FL+NQDKLEK ++ LDKEM RMNKANR LKNEKTTL AT+ SQDEYIKDLE+G
Sbjct: 104 ELEKTKSFLKNQDKLEKDIETLDKEMRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENG 163

Query: 62  KEYYRELVNDLNTSIGKRKAQIVDLEAHNRSLRQTVDSLHVKMVEYSEEYKILKNSYTIN 121
           KEY+ ELVNDLNTSIGKR+ QI+DLEA N SL QTVDSLH+KM E SEEY+ILKN   ++
Sbjct: 164 KEYFLELVNDLNTSIGKRETQIMDLEAQNHSLHQTVDSLHLKMAERSEEYEILKN--YVD 223

Query: 122 LLHFKI 128
            LH+++
Sbjct: 224 SLHYQL 227

[Close]

BLAST of Chy10G176260 vs. ExPASy TrEMBL
Match: A0A5A7T6E2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00290 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 6.3e-40
Identity = 93/126 (73.81%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 2   KLEKTKGFLRNQDKLEKHLKVLDKEMSRMNKANRSLKNEKTTL*ATIKSQDEYIKDLESG 61
           KLEKTK FL+NQDKLEK L+ LDKEM RMNKANRSLKNEKTT  AT+ SQDEYIKDLE+G
Sbjct: 396 KLEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTFQATMGSQDEYIKDLENG 455

Query: 62  KEYYRELVNDLNTSIGKRKAQIVDLEAHNRSLRQTVDSLHVKMVEYSEEYKILKNSYTIN 121
           KEY+ +LVNDLNTSI KR+ +I+DLEA N SLRQTVDSLH+KMVE+SEEY+ILKN    +
Sbjct: 456 KEYFLKLVNDLNTSIRKRETKIMDLEAQNHSLRQTVDSLHLKMVEHSEEYEILKN--YAD 515

Query: 122 LLHFKI 128
            LH+++
Sbjct: 516 SLHYQL 519

[Close]

BLAST of Chy10G176260 vs. ExPASy TrEMBL
Match: A0A5D3DUG2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 8.3e-40
Identity = 93/126 (73.81%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 2   KLEKTKGFLRNQDKLEKHLKVLDKEMSRMNKANRSLKNEKTTL*ATIKSQDEYIKDLESG 61
           +LEKTK FL+NQDKLE  LK LDKEM RMNKANRSLKNEKTTL AT+ SQDEYIKDLE+G
Sbjct: 111 ELEKTKSFLKNQDKLENDLKTLDKEMRRMNKANRSLKNEKTTLQATVGSQDEYIKDLENG 170

Query: 62  KEYYRELVNDLNTSIGKRKAQIVDLEAHNRSLRQTVDSLHVKMVEYSEEYKILKNSYTIN 121
           KEY+ ELVNDLNTSI KR+ QI+DLEA N SLRQT+D+LH+KM E SEEY+ILKN    +
Sbjct: 171 KEYFLELVNDLNTSIVKRETQIMDLEAQNHSLRQTIDNLHLKMAERSEEYEILKN--YAD 230

Query: 122 LLHFKI 128
            LHF++
Sbjct: 231 SLHFQL 234

[Close]

BLAST of Chy10G176260 vs. NCBI nr
Match: KAA0066094.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 190 bits (483), Expect = 5.60e-54
Identity = 103/132 (78.03%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 3   LEKTKGFLRNQDKLEKHLKVLDKEMSRMNKANRSLKNEKTTL*ATIKSQDEYIKDLESGK 62
           LEKTK FL+NQDKLEK L+ LDKEM RMNKANRSLKNEKTTL AT+ SQDEYIKDLE+GK
Sbjct: 374 LEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATMGSQDEYIKDLENGK 433

Query: 63  EYYRELVNDLNTSIGKRKAQIVDLEAHNRSLRQTVDSLHVKMVEYSEEYKILKNS---YT 122
           EY+ E VNDLNTSIGKR+ QI+DLEA N SLRQTVDSLH+KM E SEEY+ILK     YT
Sbjct: 434 EYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKIMPIPYT 493

Query: 123 INLLHFKIQVRG 131
           INLLHFKIQ  G
Sbjct: 494 INLLHFKIQAGG 505

[Close]

BLAST of Chy10G176260 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 8.00e-51
Identity = 93/125 (74.40%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 3   LEKTKGFLRNQDKLEKHLKVLDKEMSRMNKANRSLKNEKTTL*ATIKSQDEYIKDLESGK 62
           LEKTK FL+NQDKLEK L+ LDKEM RM+KANRSLKNEKTTL AT+ SQDEYIKDLE+GK
Sbjct: 11  LEKTKSFLKNQDKLEKDLETLDKEMRRMDKANRSLKNEKTTLQATVGSQDEYIKDLENGK 70

Query: 63  EYYRELVNDLNTSIGKRKAQIVDLEAHNRSLRQTVDSLHVKMVEYSEEYKILKNSYTINL 122
           EY+ E VNDLNTSIGKR+ QI+DLEA N SLRQTVDSLH+KM E SEEY+ILKN    + 
Sbjct: 71  EYFLERVNDLNTSIGKRETQIMDLEAQNHSLRQTVDSLHLKMAECSEEYEILKNY--ADS 130

Query: 123 LHFKI 127
           LH+++
Sbjct: 131 LHYQL 133

[Close]

BLAST of Chy10G176260 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (445), Expect = 3.95e-50
Identity = 92/125 (73.60%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 3   LEKTKGFLRNQDKLEKHLKVLDKEMSRMNKANRSLKNEKTTL*ATIKSQDEYIKDLESGK 62
           LEKTK FL+NQDKLEK ++ LDKEM RMNKANR LKNEKTTL AT+ SQDEYIKDLE+GK
Sbjct: 105 LEKTKSFLKNQDKLEKDIETLDKEMRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGK 164

Query: 63  EYYRELVNDLNTSIGKRKAQIVDLEAHNRSLRQTVDSLHVKMVEYSEEYKILKNSYTINL 122
           EY+ ELVNDLNTSIGKR+ QI+DLEA N SL QTVDSLH+KM E SEEY+ILKN   ++ 
Sbjct: 165 EYFLELVNDLNTSIGKRETQIMDLEAQNHSLHQTVDSLHLKMAERSEEYEILKNY--VDS 224

Query: 123 LHFKI 127
           LH+++
Sbjct: 225 LHYQL 227

[Close]

BLAST of Chy10G176260 vs. NCBI nr
Match: KAA0037780.1 (girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 9.99e-50
Identity = 93/125 (74.40%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 3   LEKTKGFLRNQDKLEKHLKVLDKEMSRMNKANRSLKNEKTTL*ATIKSQDEYIKDLESGK 62
           LEKTK FL+NQDKLE  LK LDKEM RMNKANRSLKNEKTTL AT+ SQDEYIKDLE+GK
Sbjct: 112 LEKTKSFLKNQDKLENDLKTLDKEMRRMNKANRSLKNEKTTLQATVGSQDEYIKDLENGK 171

Query: 63  EYYRELVNDLNTSIGKRKAQIVDLEAHNRSLRQTVDSLHVKMVEYSEEYKILKNSYTINL 122
           EY+ ELVNDLNTSI KR+ QI+DLEA N SLRQT+D+LH+KM E SEEY+ILKN    + 
Sbjct: 172 EYFLELVNDLNTSIVKRETQIMDLEAQNHSLRQTIDNLHLKMAERSEEYEILKNY--ADS 231

Query: 123 LHFKI 127
           LHF++
Sbjct: 232 LHFQL 234

[Close]

BLAST of Chy10G176260 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (445), Expect = 1.32e-49
Identity = 92/125 (73.60%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 3   LEKTKGFLRNQDKLEKHLKVLDKEMSRMNKANRSLKNEKTTL*ATIKSQDEYIKDLESGK 62
           LEKTK FL+NQDKLEK L+  DKEM RMNKANRSLKNEKTTL AT+ S+DEYIKDLE+GK
Sbjct: 153 LEKTKSFLKNQDKLEKDLETSDKEMRRMNKANRSLKNEKTTLQATVGSEDEYIKDLENGK 212

Query: 63  EYYRELVNDLNTSIGKRKAQIVDLEAHNRSLRQTVDSLHVKMVEYSEEYKILKNSYTINL 122
           EY+ ELVNDLNTSIGKR+ QI+DLEA N SLRQTVD+LH+KM E SEEY+ILKN   ++ 
Sbjct: 213 EYFLELVNDLNTSIGKRETQIMDLEAQNHSLRQTVDNLHLKMAERSEEYEILKNY--VDS 272

Query: 123 LHFKI 127
           LH+++
Sbjct: 273 LHYQL 275

The following BLAST results are available for this feature:

BLAST of Chy10G176260 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G176260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFL0	1.5e-44	77.44	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=...	[more]
A0A5D3D533	3.7e-40	73.02	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE...	[more]
A0A5D3DJ95	3.7e-40	73.02	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P...	[more]
A0A5A7T6E2	6.3e-40	73.81	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00290 PE=...	[more]
A0A5D3DUG2	8.3e-40	73.81	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 P...	[more]

BLAST of Chy10G176260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066094.1	5.60e-54	78.03	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0060422.1	8.00e-51	74.40	girdin-like [Cucumis melo var. makuwa]	[more]
TYK23632.1	3.95e-50	73.60	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0037780.1	9.99e-50	74.40	girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var...	[more]
TYK18656.1	1.32e-49	73.60	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of Chy10G176260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 13..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G176260.1	Chy10G176260.1	mRNA