Chy10G176040 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G176040
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Ribonuclease H
Location	chrH10: 9797012 .. 9797268 (-)
RNA-Seq Expression	Chy10G176040
Synteny	Chy10G176040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGAGCAGTAGAGGCAGCAAATAAAAATATCAAAAGAATTATTGAAAAGATGACTATCACGTATAAAGATTGGCATGAGATGTTACCATTTGCATTACACGGTTACCGAACGTTAGTTCGCACATCAACTGAGGCAACTCCTTTCTCTTTGGTGTATGGCGTGGAAGTTGTTTTGCCTATTGAGGTCGAGGTGCCATCCCTTAGGGTAATCAAAGAAGCAGAACTAGAAGAAGCTGAATGGACACGGGCAAG

mRNA sequence

ATGAATGGAGCAGTAGAGGCAGCAAATAAAAATATCAAAAGAATTATTGAAAAGATGACTATCACGTATAAAGATTGGCATGAGATGTTACCATTTGCATTACACGGTTACCGAACGTTAGTTCGCACATCAACTGAGGCAACTCCTTTCTCTTTGGTGTATGGCGTGGAAGTTGTTTTGCCTATTGAGGTCGAGGTGCCATCCCTTAGGGTAATCAAAGAAGCAGAACTAGAAGAAGCTGAATGGACACGGGCAAG

Coding sequence (CDS)

ATGAATGGAGCAGTAGAGGCAGCAAATAAAAATATCAAAAGAATTATTGAAAAGATGACTATCACGTATAAAGATTGGCATGAGATGTTACCATTTGCATTACACGGTTACCGAACGTTAGTTCGCACATCAACTGAGGCAACTCCTTTCTCTTTGGTGTATGGCGTGGAAGTTGTTTTGCCTATTGAGGTCGAGGTGCCATCCCTTAGGGTAATCAAAGAAGCAGAACTAGAAGAAGCTGAATGGACACGGGCAAG

Protein sequence

MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTLVRTSTEATPFSLVYGVEVVLPIEVEVPSLRVIKEAELEEAEWTRAX

Homology

[Close]

BLAST of Chy10G176040 vs. ExPASy TrEMBL
Match: A0A5A7T1X2 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00190 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-34
Identity = 74/84 (88.10%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1   MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTLVRTSTEATPFSLVYGVEVVL 60
           MNGAVEAANKNIKRI+EKMTITYKDWHEMLPFALHGYRT VRTSTEATPFSLVYG+EVVL
Sbjct: 384 MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYGMEVVL 443

Query: 61  PIEVEVPSLRVIKEAELEEAEWTR 85
           P+EVE+PSLRV+ EA+L+EAEW R
Sbjct: 444 PLEVEIPSLRVLMEAKLDEAEWIR 467

[Close]

BLAST of Chy10G176040 vs. ExPASy TrEMBL
Match: A0A5A7T0A1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00070 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.0e-33
Identity = 74/84 (88.10%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1   MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTLVRTSTEATPFSLVYGVEVVL 60
           MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRT VRTST ATPFSLVYG+EVVL
Sbjct: 697 MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVL 756

Query: 61  PIEVEVPSLRVIKEAELEEAEWTR 85
           P+EVE+PSLRV+ EA+L+EAEW R
Sbjct: 757 PLEVEIPSLRVLMEAKLDEAEWIR 780

[Close]

BLAST of Chy10G176040 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.0e-33
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1    MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTLVRTSTEATPFSLVYGVEVVL 60
            MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRT VRTST ATPFSLVYG+E VL
Sbjct: 1751 MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVL 1810

Query: 61   PIEVEVPSLRVIKEAELEEAEWTR 85
            P+EVE+PSLRV+ EA+L+EAEW R
Sbjct: 1811 PLEVEIPSLRVLMEAKLDEAEWIR 1834

[Close]

BLAST of Chy10G176040 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.0e-33
Identity = 72/84 (85.71%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1    MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTLVRTSTEATPFSLVYGVEVVL 60
            MNGAVEAANKNIKRI+EKMT+TY+DWHEMLPFALHGYRT VRTST ATPFSLVYG+EVVL
Sbjct: 2077 MNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEVVL 2136

Query: 61   PIEVEVPSLRVIKEAELEEAEWTR 85
            PIEVE+PSLRVI EA+L+EAEW +
Sbjct: 2137 PIEVEIPSLRVIMEAKLQEAEWVQ 2160

[Close]

BLAST of Chy10G176040 vs. ExPASy TrEMBL
Match: A0A6J1D7C7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018303 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.7e-33
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1    MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTLVRTSTEATPFSLVYGVEVVL 60
            MNGAVEAANKNIKRI+EKMT+TY+DWHEMLPFALHGYRT VRTST ATPFSLVYG+E VL
Sbjct: 1481 MNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVL 1540

Query: 61   PIEVEVPSLRVIKEAELEEAEWTR 85
            PIEVE+PSLRVI EA+L+EAEW +
Sbjct: 1541 PIEVEIPSLRVIMEAKLQEAEWVQ 1564

[Close]

BLAST of Chy10G176040 vs. NCBI nr
Match: KAA0046906.1 (putative integrase [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 5.19e-43
Identity = 72/84 (85.71%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTLVRTSTEATPFSLVYGVEVVL 60
          MNGAVEAA KNIKRIIEKM ITYKDWHEML FALHGYRTLVRTST ATPFSLVYG+EVVL
Sbjct: 1  MNGAVEAAIKNIKRIIEKMIITYKDWHEMLLFALHGYRTLVRTSTGATPFSLVYGMEVVL 60

Query: 61 PIEVEVPSLRVIKEAELEEAEWTR 84
          P+EVE+PSLRV+ EA+L+EAEW R
Sbjct: 61 PLEVEIPSLRVLMEAKLDEAEWIR 84

[Close]

BLAST of Chy10G176040 vs. NCBI nr
Match: KAA0066098.1 (uncharacterized protein E6C27_scaffold21G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 7.34e-43
Identity = 71/84 (84.52%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1   MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTLVRTSTEATPFSLVYGVEVVL 60
           MNGAVEA NKNIKRIIEKMTITYKDWHEMLPFALHGYRT VRTST ATPFSLVYG++VVL
Sbjct: 23  MNGAVEATNKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMKVVL 82

Query: 61  PIEVEVPSLRVIKEAELEEAEWTR 84
           P+EVE+PSLRV+ EA+L+E EW R
Sbjct: 83  PLEVEIPSLRVLMEAKLDETEWIR 106

[Close]

BLAST of Chy10G176040 vs. NCBI nr
Match: TYK22867.1 (putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (374), Expect = 8.97e-43
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1   MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTLVRTSTEATPFSLVYGVEVVL 60
           MNGAVEAANKNIKRIIEKMTI YKDWHEMLPF LHGYRTLVRTST A PFSLVYG+EVVL
Sbjct: 94  MNGAVEAANKNIKRIIEKMTIIYKDWHEMLPFVLHGYRTLVRTSTGAIPFSLVYGMEVVL 153

Query: 61  PIEVEVPSLRVIKEAELEEAEWTRA 85
           P+EVE+PSLRV+ EA+L+EAEW R+
Sbjct: 154 PLEVEIPSLRVLTEAKLDEAEWIRS 178

[Close]

BLAST of Chy10G176040 vs. NCBI nr
Match: KAA0036943.1 (uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (389), Expect = 2.12e-42
Identity = 74/84 (88.10%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1   MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTLVRTSTEATPFSLVYGVEVVL 60
           MNGAVEAANKNIKRI+EKMTITYKDWHEMLPFALHGYRT VRTSTEATPFSLVYG+EVVL
Sbjct: 384 MNGAVEAANKNIKRIVEKMTITYKDWHEMLPFALHGYRTSVRTSTEATPFSLVYGMEVVL 443

Query: 61  PIEVEVPSLRVIKEAELEEAEWTR 84
           P+EVE+PSLRV+ EA+L+EAEW R
Sbjct: 444 PLEVEIPSLRVLMEAKLDEAEWIR 467

[Close]

BLAST of Chy10G176040 vs. NCBI nr
Match: TYK03242.1 (putative integrase [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (368), Expect = 6.48e-42
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MNGAVEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTLVRTSTEATPFSLVYGVEVVL 60
          MNGAVEAA KNIKRIIEKM ITYKDWHEML FALHGYRTLVRTST ATPFSLVYG+EVVL
Sbjct: 1  MNGAVEAAIKNIKRIIEKMIITYKDWHEMLLFALHGYRTLVRTSTGATPFSLVYGMEVVL 60

Query: 61 PIEVEVPSLRVIKEAELEEAEWTRA 85
          P+EVE+PSLRV+ EA+L+EAEW RA
Sbjct: 61 PLEVEIPSLRVLMEAKLDEAEWIRA 85

The following BLAST results are available for this feature:

BLAST of Chy10G176040 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G176040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1X2	2.1e-34	88.10	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00190 ...	[more]
A0A5A7T0A1	1.0e-33	88.10	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00070 ...	[more]
A0A5A7T7R4	3.0e-33	86.90	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282...	[more]
A0A6J1D099	3.0e-33	85.71	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]
A0A6J1D7C7	8.7e-33	84.52	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018303 PE=4 SV=1	[more]

BLAST of Chy10G176040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046906.1	5.19e-43	85.71	putative integrase [Cucumis melo var. makuwa]	[more]
KAA0066098.1	7.34e-43	84.52	uncharacterized protein E6C27_scaffold21G00890 [Cucumis melo var. makuwa]	[more]
TYK22867.1	8.97e-43	84.71	putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cu...	[more]
KAA0036943.1	2.12e-42	88.10	uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]	[more]
TYK03242.1	6.48e-42	85.88	putative integrase [Cucumis melo var. makuwa]	[more]

BLAST of Chy10G176040 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..85 e-value: 7.8E-15 score: 56.7
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..81
None	No IPR available	PANTHER	PTHR24559:SF342	SUBFAMILY NOT NAMED	coord: 2..81
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G176040.1	Chy10G176040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity