Chy10G173750 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G173750
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Plant transposase
Location	chrH10: 4391037 .. 4391618 (+)
RNA-Seq Expression	Chy10G173750
Synteny	Chy10G173750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGTTGAAGATCATGTTGTCAATAAAGAACCCCCATTGGAAACGACGACTTTGCCAAACAAAACAAGAGGACCTACAAAAATGAAGACAATAGTCGTTCAGAAACAATCAAGAGTGAACCTTGTTTACAATGAAAATGGACAACCCATTGGTGATGAATCGGTAGGATTAGCTTCTTTTCTTGGACCACTAGTGAGAGAGGTTGTACCAGTGAATCTTGAGAATTGGCTAAAATTACCAACAAGATTGAAAGTAGTGTTATGAAAATCTATCCAGGTATTAAGTTACTTTATTTCCCTTACATAGCTTAGATAGAAGACCCATTTCTTTTTCTCTAATAAGTTCATTACGTTTGATTTCTAACTATTTTATATTTTAGTCAAGGTACAATGTGGAAGATTGGCAAAAAAAAAATTCTTCCAAAAGATGGGTAAATTATGGAGGGCTGGAAAGTCTCGTTTAGTAAAACAGATTCGAGATGCCCCAACAAAGGATGCAATTTTGAAGATGATGCCTAATAATTTATAATATGTAGATGATTGGATGGACTTTGTGAGTGAGATGACTAGTGCAAACTTCAAG

mRNA sequence

ACAGTTGAAGATCATGTTGTCAATAAAGAACCCCCATTGGAAACGACGACTTTGCCAAACAAAACAAGAGGACCTACAAAAATGAAGACAATAGTCGTTCAGAAACAATCAAGAGTGAACCTTGTTTACAATGAAAATGGACAACCCATTGGTGATGAATCGGTACAATGTGGAAGATTGGCAAAAAAAAAATTCTTCCAAAAGATGGATGATTGGATGGACTTTGTGAGTGAGATGACTAGTGCAAACTTCAAG

Coding sequence (CDS)

ACAGTTGAAGATCATGTTGTCAATAAAGAACCCCCATTGGAAACGACGACTTTGCCAAACAAAACAAGAGGACCTACAAAAATGAAGACAATAGTCGTTCAGAAACAATCAAGAGTGAACCTTGTTTACAATGAAAATGGACAACCCATTGGTGATGAATCGGTACAATGTGGAAGATTGGCAAAAAAAAAATTCTTCCAAAAGATGGATGATTGGATGGACTTTGTGAGTGAGATGACTAGTGCAAACTTCAAG

Protein sequence

TVEDHVVNKEPPLETTTLPNKTRGPTKMKTIVVQKQSRVNLVYNENGQPIGDESVQCGRLAKKKFFQKMDDWMDFVSEMTSANFK

Homology

[Close]

BLAST of Chy10G173750 vs. ExPASy TrEMBL
Match: A0A5A7UH86 (Putative TNP1-like transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002840 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.4e-20
Identity = 60/116 (51.72%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 2   VEDHVVNKEPPLETTTLPNKTRGPTKMKTIVVQKQSRVNLVYNENGQPIGDESV----QC 61
           VEDH++++E P ET TL  KTRGPTKMKTIVV+KQSRV++++NE GQPIG+ESV      
Sbjct: 387 VEDHIIDEESPFETMTLRKKTRGPTKMKTIVVEKQSRVDIIFNEYGQPIGNESVGLASVL 446

Query: 62  GRLA----------------------------KKKFFQKMDDWMDFVSEMTSANFK 86
           G+L                             KK FFQK+DDWMDFVSE TSA FK
Sbjct: 447 GQLVREVVPVNLENWLKLPTRLKSRYNVEDWQKKFFFQKIDDWMDFVSEKTSATFK 502

[Close]

BLAST of Chy10G173750 vs. ExPASy TrEMBL
Match: A0A5A7V1K6 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G001610 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 68/157 (43.31%), Postives = 75/157 (47.77%), Query Frame = 0


Query: 2   VEDHVVNKEPPLETTTLPNKTRGPTKMKTIVVQKQSRVNLVYNENGQPIGDES------- 61
           VEDHVV++EPP ET TL  KTRGPTKMKTI V+KQSRV++V+NE GQPIG+ES       
Sbjct: 67  VEDHVVDEEPPFETMTLRKKTRGPTKMKTIAVEKQSRVDIVFNEYGQPIGNESVGLASFL 126

Query: 62  -------------------------------VQCGRLAKKKFFQKM-------------- 86
                                          VQCGRLAKK FFQKM              
Sbjct: 127 GPLVRKVVPVNLENWLKLPTRLKVVLWKSIQVQCGRLAKKVFFQKMGRLWRAGKSCLVKQ 186

[Close]

BLAST of Chy10G173750 vs. ExPASy TrEMBL
Match: A0A5A7UXH0 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006500 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.6e-18
Identity = 57/112 (50.89%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 2   VEDHVVNKEPPLETTTLPNKTRGPTKMKTIVVQKQSRVNLVYNENGQPIGDESVQCGRL- 61
           VEDHVV++EPP ET TL  KTRGPTKMKTI V+KQSRV++V+NE GQPI DESV      
Sbjct: 38  VEDHVVDEEPPFETMTLRKKTRGPTKMKTIAVEKQSRVDIVFNEYGQPINDESVGLASFL 97

Query: 62  -------------------------------AKKKFFQKMDDWMDFVSEMTS 82
                                           KK FF+K+DDWMDFVSE TS
Sbjct: 98  EPLVREVVPVNLENWLKLPTRVKSRYNVEDWQKKFFFKKIDDWMDFVSEKTS 149

[Close]

BLAST of Chy10G173750 vs. ExPASy TrEMBL
Match: A0A5D3CNY4 (Putative TNP1-like transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00040 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.7e-17
Identity = 58/116 (50.00%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 2   VEDHVVNKEPPLETTTLPNKTRGPTKMKTIVVQKQSRVNLVYNENGQPIGDESVQ----C 61
           VEDHVV++EPP ET TL  KTRGPTKMKTI V+KQSRV++V+NE GQPIG+ESV      
Sbjct: 428 VEDHVVDEEPPFETMTLRKKTRGPTKMKTIAVEKQSRVDIVFNEYGQPIGNESVGLASFL 487

Query: 62  GRLAKKKF----------------------------FQKMDDWMDFVSEMTSANFK 86
           G L ++                               Q +DDWMDFVSE TSA FK
Sbjct: 488 GPLVREVVPVNLENWLKLPTRLKVVLWKSIQLMPDNLQSVDDWMDFVSEKTSATFK 543

[Close]

BLAST of Chy10G173750 vs. ExPASy TrEMBL
Match: A0A5A7V6P9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G001080 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 2   VEDHVVNKEPPLETTTLPNKTRGPTKMKTIVVQKQSRVNLVYNENGQPIGDESVQ 57
           VEDH+VN+EPP ET TLP KTRGPTKMKTI V+KQSRV++V+NE GQPIGDES++
Sbjct: 66  VEDHIVNEEPPFETMTLPKKTRGPTKMKTIAVEKQSRVDIVFNEYGQPIGDESIR 120

[Close]

BLAST of Chy10G173750 vs. NCBI nr
Match: KAA0054504.1 (putative TNP1-like transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 3.05e-24
Identity = 60/116 (51.72%), Postives = 72/116 (62.07%), Query Frame = 0


Query: 2   VEDHVVNKEPPLETTTLPNKTRGPTKMKTIVVQKQSRVNLVYNENGQPIGDESVQC---- 61
           VEDH++++E P ET TL  KTRGPTKMKTIVV+KQSRV++++NE GQPIG+ESV      
Sbjct: 387 VEDHIIDEESPFETMTLRKKTRGPTKMKTIVVEKQSRVDIIFNEYGQPIGNESVGLASVL 446

Query: 62  GRLA----------------------------KKKFFQKMDDWMDFVSEMTSANFK 85
           G+L                             KK FFQK+DDWMDFVSE TSA FK
Sbjct: 447 GQLVREVVPVNLENWLKLPTRLKSRYNVEDWQKKFFFQKIDDWMDFVSEKTSATFK 502

[Close]

BLAST of Chy10G173750 vs. NCBI nr
Match: KAA0060366.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (259), Expect = 6.60e-24
Identity = 68/157 (43.31%), Postives = 75/157 (47.77%), Query Frame = 0


Query: 2   VEDHVVNKEPPLETTTLPNKTRGPTKMKTIVVQKQSRVNLVYNENGQPIGDESV------ 61
           VEDHVV++EPP ET TL  KTRGPTKMKTI V+KQSRV++V+NE GQPIG+ESV      
Sbjct: 67  VEDHVVDEEPPFETMTLRKKTRGPTKMKTIAVEKQSRVDIVFNEYGQPIGNESVGLASFL 126

Query: 62  --------------------------------QCGRLAKKKFFQKM-------------- 85
                                           QCGRLAKK FFQKM              
Sbjct: 127 GPLVRKVVPVNLENWLKLPTRLKVVLWKSIQVQCGRLAKKVFFQKMGRLWRAGKSCLVKQ 186

[Close]

BLAST of Chy10G173750 vs. NCBI nr
Match: KAA0058315.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (248), Expect = 1.02e-23
Identity = 57/112 (50.89%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 2   VEDHVVNKEPPLETTTLPNKTRGPTKMKTIVVQKQSRVNLVYNENGQPIGDESVQCGRLA 61
           VEDHVV++EPP ET TL  KTRGPTKMKTI V+KQSRV++V+NE GQPI DESV      
Sbjct: 38  VEDHVVDEEPPFETMTLRKKTRGPTKMKTIAVEKQSRVDIVFNEYGQPINDESVGLASFL 97

Query: 62  --------------------------------KKKFFQKMDDWMDFVSEMTS 81
                                           KK FF+K+DDWMDFVSE TS
Sbjct: 98  EPLVREVVPVNLENWLKLPTRVKSRYNVEDWQKKFFFKKIDDWMDFVSEKTS 149

[Close]

BLAST of Chy10G173750 vs. NCBI nr
Match: TYK13531.1 (putative TNP1-like transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 1.54e-21
Identity = 58/116 (50.00%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 2   VEDHVVNKEPPLETTTLPNKTRGPTKMKTIVVQKQSRVNLVYNENGQPIGDESVQC---- 61
           VEDHVV++EPP ET TL  KTRGPTKMKTI V+KQSRV++V+NE GQPIG+ESV      
Sbjct: 428 VEDHVVDEEPPFETMTLRKKTRGPTKMKTIAVEKQSRVDIVFNEYGQPIGNESVGLASFL 487

Query: 62  GRLAKKKF----------------------------FQKMDDWMDFVSEMTSANFK 85
           G L ++                               Q +DDWMDFVSE TSA FK
Sbjct: 488 GPLVREVVPVNLENWLKLPTRLKVVLWKSIQLMPDNLQSVDDWMDFVSEKTSATFK 543

[Close]

BLAST of Chy10G173750 vs. NCBI nr
Match: KAA0061411.1 (uncharacterized protein E6C27_scaffold749G001080 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 2.17e-21
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 2   VEDHVVNKEPPLETTTLPNKTRGPTKMKTIVVQKQSRVNLVYNENGQPIGDESVQ 56
           VEDH+VN+EPP ET TLP KTRGPTKMKTI V+KQSRV++V+NE GQPIGDES++
Sbjct: 66  VEDHIVNEEPPFETMTLPKKTRGPTKMKTIAVEKQSRVDIVFNEYGQPIGDESIR 120

The following BLAST results are available for this feature:

BLAST of Chy10G173750 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G173750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UH86	8.4e-20	51.72	Putative TNP1-like transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7V1K6	2.4e-19	43.31	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G001...	[more]
A0A5A7UXH0	4.6e-18	50.89	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00...	[more]
A0A5D3CNY4	1.7e-17	50.00	Putative TNP1-like transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7V6P9	1.2e-15	76.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Chy10G173750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054504.1	3.05e-24	51.72	putative TNP1-like transposon protein [Cucumis melo var. makuwa]	[more]
KAA0060366.1	6.60e-24	43.31	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0058315.1	1.02e-23	50.89	Plant transposase [Cucumis melo var. makuwa]	[more]
TYK13531.1	1.54e-21	50.00	putative TNP1-like transposon protein [Cucumis melo var. makuwa]	[more]
KAA0061411.1	2.17e-21	76.36	uncharacterized protein E6C27_scaffold749G001080 [Cucumis melo var. makuwa]	[more]

BLAST of Chy10G173750 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G173750.1	Chy10G173750.1	mRNA