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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAAAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATG mRNA sequence ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAAAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATG Coding sequence (CDS) ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAAAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATG Protein sequence MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHKKEEDSIEFSKDWGVIDSCVM
Homology
BLAST of Chy10G173270 vs. ExPASy TrEMBL
Match: A0A0A0KMD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283480 PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 9.7e-22 Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0 Query: 1 MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHKKEEDSIEFSKDWGVIDSCVM 55 MSAGVDPHDDCKFVGDNQGNIASFEEND+NNEH+KEEDSIEFSKDWGVIDSCVM Sbjct: 1 MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVM 54
BLAST of Chy10G173270 vs. NCBI nr
Match: KGN50830.1 (hypothetical protein Csa_004697 [Cucumis sativus]) HSP 1 Score: 113 bits (283), Expect = 1.70e-31 Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0 Query: 1 MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHKKEEDSIEFSKDWGVIDSCVM 54 MSAGVDPHDDCKFVGDNQGNIASFEEND+NNEH+KEEDSIEFSKDWGVIDSCVM Sbjct: 1 MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVM 54
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KMD4 | 9.7e-22 | 96.30 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283480 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN50830.1 | 1.70e-31 | 96.30 | hypothetical protein Csa_004697 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..40 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 26..40 |
Relationships
The following mRNA feature(s) are a part of this gene:
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