Chy10G173270 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G173270
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH10: 3426545 .. 3426706 (+)
RNA-Seq Expression	Chy10G173270
Synteny	Chy10G173270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAAAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATG

mRNA sequence

ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAAAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATG

Coding sequence (CDS)

ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAAAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATG

Protein sequence

MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHKKEEDSIEFSKDWGVIDSCVM

Homology

[Close]

BLAST of Chy10G173270 vs. ExPASy TrEMBL
Match: A0A0A0KMD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283480 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.7e-22
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHKKEEDSIEFSKDWGVIDSCVM 55
          MSAGVDPHDDCKFVGDNQGNIASFEEND+NNEH+KEEDSIEFSKDWGVIDSCVM
Sbjct: 1  MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVM 54

[Close]

BLAST of Chy10G173270 vs. NCBI nr
Match: KGN50830.1 (hypothetical protein Csa_004697 [Cucumis sativus])

HSP 1 Score: 113 bits (283), Expect = 1.70e-31
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHKKEEDSIEFSKDWGVIDSCVM 54
          MSAGVDPHDDCKFVGDNQGNIASFEEND+NNEH+KEEDSIEFSKDWGVIDSCVM
Sbjct: 1  MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVM 54

The following BLAST results are available for this feature:

BLAST of Chy10G173270 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G173270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMD4	9.7e-22	96.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283480 PE=4 SV=1	[more]

BLAST of Chy10G173270 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50830.1	1.70e-31	96.30	hypothetical protein Csa_004697 [Cucumis sativus]	[more]

BLAST of Chy10G173270 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G173270.1	Chy10G173270.1	mRNA