Chy10G172830 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G172830
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	40S ribosomal protein S5
Location	chrH10: 2310268 .. 2310621 (-)
RNA-Seq Expression	Chy10G172830
Synteny	Chy10G172830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTCAGGATTATTAAGCATGCAATGGAGATTATTCATCTTCTAACCGATTTCAACCCTATTCAAGTCATTGTCGATGCGGTTGTTAACAGTGGACCACGTGAAGATGCCACTCGAATTGGCTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTTTGCGACGTGTTAATCAGGCAATCTATCTTCTTACAACGGGTGCTCGTGAGGCCGCTTTCAGAAACATCAAAACAATTGCAGAATGCTTGGCGGATGAACTTATTAATGCAGCAAAGGGATCATCCAACAGTTATGCAATCAAGAAAAAGGATGAGATTGAAAGAGTTGCTAAGGCAAATCGTTGA

mRNA sequence

ATGGCTGTCAGGATTATTAAGCATGCAATGGAGATTATTCATCTTCTAACCGATTTCAACCCTATTCAAGTCATTGTCGATGCGGTTGTTAACAGTGGACCACGTGAAGATGCCACTCGAATTGGCTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTTTGCGACGTGTTAATCAGGCAATCTATCTTCTTACAACGGGTGCTCGTGAGGCCGCTTTCAGAAACATCAAAACAATTGCAGAATGCTTGGCGGATGAACTTATTAATGCAGCAAAGGGATCATCCAACAGTTATGCAATCAAGAAAAAGGATGAGATTGAAAGAGTTGCTAAGGCAAATCGTTGA

Coding sequence (CDS)

ATGGCTGTCAGGATTATTAAGCATGCAATGGAGATTATTCATCTTCTAACCGATTTCAACCCTATTCAAGTCATTGTCGATGCGGTTGTTAACAGTGGACCACGTGAAGATGCCACTCGAATTGGCTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTTTGCGACGTGTTAATCAGGCAATCTATCTTCTTACAACGGGTGCTCGTGAGGCCGCTTTCAGAAACATCAAAACAATTGCAGAATGCTTGGCGGATGAACTTATTAATGCAGCAAAGGGATCATCCAACAGTTATGCAATCAAGAAAAAGGATGAGATTGAAAGAGTTGCTAAGGCAAATCGTTGA

Protein sequence

MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR*

Homology

[Close]

BLAST of Chy10G172830 vs. ExPASy Swiss-Prot
Match: O65731 (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum OX=3827 GN=RPS5 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.8e-55
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 81  MAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 140

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAIYLLTTGAREAAFRNIK+IAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 141 NQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197

[Close]

BLAST of Chy10G172830 vs. ExPASy Swiss-Prot
Match: O24111 (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia OX=4092 GN=RPS5 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.3e-55
Identity = 112/117 (95.73%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLLTD NPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 38  MAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV 97

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           +QAIYLLTTGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 98  SQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154

[Close]

BLAST of Chy10G172830 vs. ExPASy Swiss-Prot
Match: Q9ZUT9 (40S ribosomal protein S5-1 OS=Arabidopsis thaliana OX=3702 GN=RPS5A PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.2e-55
Identity = 111/117 (94.87%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLL+D NPIQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+LLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Chy10G172830 vs. ExPASy Swiss-Prot
Match: P51427 (40S ribosomal protein S5-2 OS=Arabidopsis thaliana OX=3702 GN=RPS5B PE=1 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 110/117 (94.02%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLL+D NPIQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+L+TTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Chy10G172830 vs. ExPASy Swiss-Prot
Match: Q5E988 (40S ribosomal protein S5 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3)

HSP 1 Score: 195.3 bits (495), Expect = 3.9e-49
Identity = 99/117 (84.62%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           M VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG VRRQAVD+SPLRRV
Sbjct: 88  MTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRV 147

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 148 NQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204

[Close]

BLAST of Chy10G172830 vs. ExPASy TrEMBL
Match: A0A6J1DB82 (40S ribosomal protein S5-like OS=Momordica charantia OX=3673 GN=LOC111019394 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 90  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 149

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 150 NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 206

[Close]

BLAST of Chy10G172830 vs. ExPASy TrEMBL
Match: A0A5D3D3Q1 (40S ribosomal protein S5-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00570 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Chy10G172830 vs. ExPASy TrEMBL
Match: A0A5D3E4H0 (40S ribosomal protein S5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001940 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 119 MAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 178

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 179 NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 235

[Close]

BLAST of Chy10G172830 vs. ExPASy TrEMBL
Match: A0A5A7SN17 (40S ribosomal protein S5-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00550 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Chy10G172830 vs. ExPASy TrEMBL
Match: A0A6P4AQV6 (40S ribosomal protein S5 OS=Ziziphus jujuba OX=326968 GN=LOC107432300 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 90  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 149

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 150 NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 206

[Close]

BLAST of Chy10G172830 vs. NCBI nr
Match: ACU20582.1 (unknown [Glycine max])

HSP 1 Score: 219 bits (559), Expect = 1.24e-71
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 12  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV 71

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 117
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 72  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 128

[Close]

BLAST of Chy10G172830 vs. NCBI nr
Match: KAG2683215.1 (hypothetical protein I3760_10G022100 [Carya illinoinensis] >KAG6690576.1 hypothetical protein I3842_10G022000 [Carya illinoinensis] >KAG7958460.1 hypothetical protein I3843_10G021800 [Carya illinoinensis])

HSP 1 Score: 219 bits (557), Expect = 2.50e-71
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 12  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 71

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 117
           NQAIYLLTTGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 72  NQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 128

[Close]

BLAST of Chy10G172830 vs. NCBI nr
Match: PKI32805.1 (hypothetical protein CRG98_046798 [Punica granatum])

HSP 1 Score: 218 bits (556), Expect = 3.56e-71
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLLTD NPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 12  MAVRIVKHAMEIIHLLTDSNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV 71

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 117
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 72  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 128

[Close]

BLAST of Chy10G172830 vs. NCBI nr
Match: PKI42922.1 (hypothetical protein CRG98_036720 [Punica granatum])

HSP 1 Score: 218 bits (555), Expect = 5.05e-71
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLLTD NPIQ+IVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 12  MAVRIVKHAMEIIHLLTDSNPIQIIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV 71

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 117
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 72  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 128

[Close]

BLAST of Chy10G172830 vs. NCBI nr
Match: RZB91479.1 (40S ribosomal protein S5 isoform B [Glycine soja])

HSP 1 Score: 219 bits (559), Expect = 5.49e-71
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 57  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV 116

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 117
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 117 NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 173

[Close]

BLAST of Chy10G172830 vs. TAIR 10
Match: AT2G37270.1 (ribosomal protein 5B )

HSP 1 Score: 214.2 bits (544), Expect = 5.8e-56
Identity = 111/117 (94.87%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLL+D NPIQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+LLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Chy10G172830 vs. TAIR 10
Match: AT2G37270.2 (ribosomal protein 5B )

HSP 1 Score: 214.2 bits (544), Expect = 5.8e-56
Identity = 111/117 (94.87%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLL+D NPIQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+LLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Chy10G172830 vs. TAIR 10
Match: AT3G11940.1 (ribosomal protein 5A )

HSP 1 Score: 213.4 bits (542), Expect = 9.9e-56
Identity = 110/117 (94.02%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLL+D NPIQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+L+TTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Chy10G172830 vs. TAIR 10
Match: AT3G11940.2 (ribosomal protein 5A )

HSP 1 Score: 213.4 bits (542), Expect = 9.9e-56
Identity = 110/117 (94.02%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLL+D NPIQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+L+TTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]

BLAST of Chy10G172830 vs. TAIR 10
Match: ATCG00900.1 (Ribosomal protein S7p/S5e family protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.1e-05
Identity = 41/119 (34.45%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGP--REDATRIGSAGVVRRQAVDISPLR 60
           +A +II  A++ I   T+ NP+ V+  A+    P     A R+G  G   +  ++I   +
Sbjct: 38  LAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVG--GSTHQVPIEIGSTQ 97

Query: 61  RVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
               AI  L   +R+   RN   +A  L+ EL++AAKGS +  AI+KK+E  R+A+ANR
Sbjct: 98  GKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD--AIRKKEETHRMAEANR 149

The following BLAST results are available for this feature:

BLAST of Chy10G172830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65731	2.8e-55	98.29	40S ribosomal protein S5 (Fragment) OS=Cicer arietinum OX=3827 GN=RPS5 PE=2 SV=1	[more]
O24111	6.3e-55	95.73	40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia OX=4092 GN=RPS5...	[more]
Q9ZUT9	8.2e-55	94.87	40S ribosomal protein S5-1 OS=Arabidopsis thaliana OX=3702 GN=RPS5A PE=1 SV=1	[more]
P51427	1.4e-54	94.02	40S ribosomal protein S5-2 OS=Arabidopsis thaliana OX=3702 GN=RPS5B PE=1 SV=2	[more]
Q5E988	3.9e-49	84.62	40S ribosomal protein S5 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3	[more]

BLAST of Chy10G172830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DB82	1.6e-53	99.15	40S ribosomal protein S5-like OS=Momordica charantia OX=3673 GN=LOC111019394 PE=...	[more]
A0A5D3D3Q1	1.6e-53	99.15	40S ribosomal protein S5-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3E4H0	1.6e-53	99.15	40S ribosomal protein S5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SN17	1.6e-53	99.15	40S ribosomal protein S5-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6P4AQV6	1.6e-53	99.15	40S ribosomal protein S5 OS=Ziziphus jujuba OX=326968 GN=LOC107432300 PE=3 SV=1	[more]

BLAST of Chy10G172830 vs. NCBI nr


Match Name	E-value	Identity	Description
ACU20582.1	1.24e-71	98.29	unknown [Glycine max]	[more]
KAG2683215.1	2.50e-71	98.29	hypothetical protein I3760_10G022100 [Carya illinoinensis] >KAG6690576.1 hypothe...	[more]
PKI32805.1	3.56e-71	97.44	hypothetical protein CRG98_046798 [Punica granatum]	[more]
PKI42922.1	5.05e-71	96.58	hypothetical protein CRG98_036720 [Punica granatum]	[more]
RZB91479.1	5.49e-71	98.29	40S ribosomal protein S5 isoform B [Glycine soja]	[more]

BLAST of Chy10G172830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37270.1	5.8e-56	94.87	ribosomal protein 5B	[more]
AT2G37270.2	5.8e-56	94.87	ribosomal protein 5B	[more]
AT3G11940.1	9.9e-56	94.02	ribosomal protein 5A	[more]
AT3G11940.2	9.9e-56	94.02	ribosomal protein 5A	[more]
ATCG00900.1	2.1e-05	34.45	Ribosomal protein S7p/S5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036823	Ribosomal protein S7 domain superfamily	GENE3D	1.10.455.10	Ribosomal protein S7 domain	coord: 1..117 e-value: 5.3E-54 score: 184.7
IPR036823	Ribosomal protein S7 domain superfamily	SUPERFAMILY	47973	Ribosomal protein S7	coord: 1..117
IPR000235	Ribosomal protein S5/S7	PIRSF	PIRSF002122	RPS7p_RPS7a_RPS5e_RPS7o	coord: 1..117 e-value: 8.2E-27 score: 92.2
IPR000235	Ribosomal protein S5/S7	PANTHER	PTHR11205	RIBOSOMAL PROTEIN S7	coord: 1..117
IPR023798	Ribosomal protein S7 domain	PFAM	PF00177	Ribosomal_S7	coord: 2..117 e-value: 1.1E-29 score: 103.1
None	No IPR available	PANTHER	PTHR11205:SF36	40S RIBOSOMAL PROTEIN S5	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G172830.1	Chy10G172830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome