Chy10G172830 (gene) Cucumber (hystrix) v1

Overview
NameChy10G172830
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description40S ribosomal protein S5
LocationchrH10: 2310268 .. 2310621 (-)
RNA-Seq ExpressionChy10G172830
SyntenyChy10G172830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTCAGGATTATTAAGCATGCAATGGAGATTATTCATCTTCTAACCGATTTCAACCCTATTCAAGTCATTGTCGATGCGGTTGTTAACAGTGGACCACGTGAAGATGCCACTCGAATTGGCTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTTTGCGACGTGTTAATCAGGCAATCTATCTTCTTACAACGGGTGCTCGTGAGGCCGCTTTCAGAAACATCAAAACAATTGCAGAATGCTTGGCGGATGAACTTATTAATGCAGCAAAGGGATCATCCAACAGTTATGCAATCAAGAAAAAGGATGAGATTGAAAGAGTTGCTAAGGCAAATCGTTGA

mRNA sequence

ATGGCTGTCAGGATTATTAAGCATGCAATGGAGATTATTCATCTTCTAACCGATTTCAACCCTATTCAAGTCATTGTCGATGCGGTTGTTAACAGTGGACCACGTGAAGATGCCACTCGAATTGGCTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTTTGCGACGTGTTAATCAGGCAATCTATCTTCTTACAACGGGTGCTCGTGAGGCCGCTTTCAGAAACATCAAAACAATTGCAGAATGCTTGGCGGATGAACTTATTAATGCAGCAAAGGGATCATCCAACAGTTATGCAATCAAGAAAAAGGATGAGATTGAAAGAGTTGCTAAGGCAAATCGTTGA

Coding sequence (CDS)

ATGGCTGTCAGGATTATTAAGCATGCAATGGAGATTATTCATCTTCTAACCGATTTCAACCCTATTCAAGTCATTGTCGATGCGGTTGTTAACAGTGGACCACGTGAAGATGCCACTCGAATTGGCTCAGCTGGTGTTGTTAGGCGTCAAGCTGTGGATATATCCCCTTTGCGACGTGTTAATCAGGCAATCTATCTTCTTACAACGGGTGCTCGTGAGGCCGCTTTCAGAAACATCAAAACAATTGCAGAATGCTTGGCGGATGAACTTATTAATGCAGCAAAGGGATCATCCAACAGTTATGCAATCAAGAAAAAGGATGAGATTGAAAGAGTTGCTAAGGCAAATCGTTGA

Protein sequence

MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR*
Homology
[Close]
BLAST of Chy10G172830 vs. ExPASy Swiss-Prot
Match: O65731 (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum OX=3827 GN=RPS5 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.8e-55
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 81  MAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 140

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAIYLLTTGAREAAFRNIK+IAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 141 NQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197

[Close]
BLAST of Chy10G172830 vs. ExPASy Swiss-Prot
Match: O24111 (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia OX=4092 GN=RPS5 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 6.3e-55
Identity = 112/117 (95.73%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLLTD NPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 38  MAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV 97

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           +QAIYLLTTGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 98  SQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154

[Close]
BLAST of Chy10G172830 vs. ExPASy Swiss-Prot
Match: Q9ZUT9 (40S ribosomal protein S5-1 OS=Arabidopsis thaliana OX=3702 GN=RPS5A PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.2e-55
Identity = 111/117 (94.87%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLL+D NPIQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+LLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Chy10G172830 vs. ExPASy Swiss-Prot
Match: P51427 (40S ribosomal protein S5-2 OS=Arabidopsis thaliana OX=3702 GN=RPS5B PE=1 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-54
Identity = 110/117 (94.02%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLL+D NPIQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+L+TTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Chy10G172830 vs. ExPASy Swiss-Prot
Match: Q5E988 (40S ribosomal protein S5 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3)

HSP 1 Score: 195.3 bits (495), Expect = 3.9e-49
Identity = 99/117 (84.62%), Postives = 110/117 (94.02%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           M VRI+KHA EIIHLLT  NP+QV+V+A++NSGPRED+TRIG AG VRRQAVD+SPLRRV
Sbjct: 88  MTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRV 147

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+LL TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 148 NQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204

[Close]
BLAST of Chy10G172830 vs. ExPASy TrEMBL
Match: A0A6J1DB82 (40S ribosomal protein S5-like OS=Momordica charantia OX=3673 GN=LOC111019394 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 90  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 149

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 150 NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 206

[Close]
BLAST of Chy10G172830 vs. ExPASy TrEMBL
Match: A0A5D3D3Q1 (40S ribosomal protein S5-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00570 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Chy10G172830 vs. ExPASy TrEMBL
Match: A0A5D3E4H0 (40S ribosomal protein S5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001940 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 119 MAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 178

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 179 NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 235

[Close]
BLAST of Chy10G172830 vs. ExPASy TrEMBL
Match: A0A5A7SN17 (40S ribosomal protein S5-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00550 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Chy10G172830 vs. ExPASy TrEMBL
Match: A0A6P4AQV6 (40S ribosomal protein S5 OS=Ziziphus jujuba OX=326968 GN=LOC107432300 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 90  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 149

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 150 NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 206

[Close]
BLAST of Chy10G172830 vs. NCBI nr
Match: ACU20582.1 (unknown [Glycine max])

HSP 1 Score: 219 bits (559), Expect = 1.24e-71
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 12  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV 71

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 117
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 72  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 128

[Close]
BLAST of Chy10G172830 vs. NCBI nr
Match: KAG2683215.1 (hypothetical protein I3760_10G022100 [Carya illinoinensis] >KAG6690576.1 hypothetical protein I3842_10G022000 [Carya illinoinensis] >KAG7958460.1 hypothetical protein I3843_10G021800 [Carya illinoinensis])

HSP 1 Score: 219 bits (557), Expect = 2.50e-71
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 12  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 71

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 117
           NQAIYLLTTGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 72  NQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 128

[Close]
BLAST of Chy10G172830 vs. NCBI nr
Match: PKI32805.1 (hypothetical protein CRG98_046798 [Punica granatum])

HSP 1 Score: 218 bits (556), Expect = 3.56e-71
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLLTD NPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 12  MAVRIVKHAMEIIHLLTDSNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV 71

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 117
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 72  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 128

[Close]
BLAST of Chy10G172830 vs. NCBI nr
Match: PKI42922.1 (hypothetical protein CRG98_036720 [Punica granatum])

HSP 1 Score: 218 bits (555), Expect = 5.05e-71
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLLTD NPIQ+IVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 12  MAVRIVKHAMEIIHLLTDSNPIQIIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV 71

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 117
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 72  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 128

[Close]
BLAST of Chy10G172830 vs. NCBI nr
Match: RZB91479.1 (40S ribosomal protein S5 isoform B [Glycine soja])

HSP 1 Score: 219 bits (559), Expect = 5.49e-71
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRIIKHAMEIIHLLTD NPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 57  MAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV 116

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 117
           NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 117 NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 173

[Close]
BLAST of Chy10G172830 vs. TAIR 10
Match: AT2G37270.1 (ribosomal protein 5B )

HSP 1 Score: 214.2 bits (544), Expect = 5.8e-56
Identity = 111/117 (94.87%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLL+D NPIQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+LLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Chy10G172830 vs. TAIR 10
Match: AT2G37270.2 (ribosomal protein 5B )

HSP 1 Score: 214.2 bits (544), Expect = 5.8e-56
Identity = 111/117 (94.87%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLL+D NPIQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+LLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Chy10G172830 vs. TAIR 10
Match: AT3G11940.1 (ribosomal protein 5A )

HSP 1 Score: 213.4 bits (542), Expect = 9.9e-56
Identity = 110/117 (94.02%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLL+D NPIQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+L+TTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Chy10G172830 vs. TAIR 10
Match: AT3G11940.2 (ribosomal protein 5A )

HSP 1 Score: 213.4 bits (542), Expect = 9.9e-56
Identity = 110/117 (94.02%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRV 60
           MAVRI+KHAMEIIHLL+D NPIQVI+DA+VNSGPREDATRIGSAGVVRRQAVDISPLRRV
Sbjct: 91  MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRV 150

Query: 61  NQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
           NQAI+L+TTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 151 NQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207

[Close]
BLAST of Chy10G172830 vs. TAIR 10
Match: ATCG00900.1 (Ribosomal protein S7p/S5e family protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.1e-05
Identity = 41/119 (34.45%), Postives = 65/119 (54.62%), Query Frame = 0 

Query: 1   MAVRIIKHAMEIIHLLTDFNPIQVIVDAVVNSGP--REDATRIGSAGVVRRQAVDISPLR 60
           +A +II  A++ I   T+ NP+ V+  A+    P     A R+G  G   +  ++I   +
Sbjct: 38  LAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVG--GSTHQVPIEIGSTQ 97

Query: 61  RVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 118
               AI  L   +R+   RN   +A  L+ EL++AAKGS +  AI+KK+E  R+A+ANR
Sbjct: 98  GKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD--AIRKKEETHRMAEANR 149

The following BLAST results are available for this feature:
BLAST of Chy10G172830 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O657312.8e-5598.2940S ribosomal protein S5 (Fragment) OS=Cicer arietinum OX=3827 GN=RPS5 PE=2 SV=1[more]
O241116.3e-5595.7340S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia OX=4092 GN=RPS5... [more]
Q9ZUT98.2e-5594.8740S ribosomal protein S5-1 OS=Arabidopsis thaliana OX=3702 GN=RPS5A PE=1 SV=1[more]
P514271.4e-5494.0240S ribosomal protein S5-2 OS=Arabidopsis thaliana OX=3702 GN=RPS5B PE=1 SV=2[more]
Q5E9883.9e-4984.6240S ribosomal protein S5 OS=Bos taurus OX=9913 GN=RPS5 PE=2 SV=3[more]
BLAST of Chy10G172830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DB821.6e-5399.1540S ribosomal protein S5-like OS=Momordica charantia OX=3673 GN=LOC111019394 PE=... [more]
A0A5D3D3Q11.6e-5399.1540S ribosomal protein S5-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3E4H01.6e-5399.1540S ribosomal protein S5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7SN171.6e-5399.1540S ribosomal protein S5-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A6P4AQV61.6e-5399.1540S ribosomal protein S5 OS=Ziziphus jujuba OX=326968 GN=LOC107432300 PE=3 SV=1[more]
BLAST of Chy10G172830 vs. NCBI nr
Match NameE-valueIdentityDescription
ACU20582.11.24e-7198.29unknown [Glycine max][more]
KAG2683215.12.50e-7198.29hypothetical protein I3760_10G022100 [Carya illinoinensis] >KAG6690576.1 hypothe... [more]
PKI32805.13.56e-7197.44hypothetical protein CRG98_046798 [Punica granatum][more]
PKI42922.15.05e-7196.58hypothetical protein CRG98_036720 [Punica granatum][more]
RZB91479.15.49e-7198.2940S ribosomal protein S5 isoform B [Glycine soja][more]
BLAST of Chy10G172830 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G37270.15.8e-5694.87ribosomal protein 5B [more]
AT2G37270.25.8e-5694.87ribosomal protein 5B [more]
AT3G11940.19.9e-5694.02ribosomal protein 5A [more]
AT3G11940.29.9e-5694.02ribosomal protein 5A [more]
ATCG00900.12.1e-0534.45Ribosomal protein S7p/S5e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036823Ribosomal protein S7 domain superfamilyGENE3D1.10.455.10Ribosomal protein S7 domaincoord: 1..117
e-value: 5.3E-54
score: 184.7
IPR036823Ribosomal protein S7 domain superfamilySUPERFAMILY47973Ribosomal protein S7coord: 1..117
IPR000235Ribosomal protein S5/S7PIRSFPIRSF002122RPS7p_RPS7a_RPS5e_RPS7ocoord: 1..117
e-value: 8.2E-27
score: 92.2
IPR000235Ribosomal protein S5/S7PANTHERPTHR11205RIBOSOMAL PROTEIN S7coord: 1..117
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 2..117
e-value: 1.1E-29
score: 103.1
NoneNo IPR availablePANTHERPTHR11205:SF3640S RIBOSOMAL PROTEIN S5coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G172830.1Chy10G172830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome