Homology
BLAST of CcUC10G197310 vs. NCBI nr
Match:
XP_038906215.1 (RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida])
HSP 1 Score: 818.1 bits (2112), Expect = 3.5e-233
Identity = 413/436 (94.72%), Postives = 427/436 (97.94%), Query Frame = 0
Query: 1 MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLG+NFI+NDTLTLP
Sbjct: 1 MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGTNFINNDTLTLP 60
Query: 61 PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
PPPEAAVL VEAAREHVLV+ARGFSEDWSCKNLERME SCGGDGTVAWKKKRRKRRKEVG
Sbjct: 61 PPPEAAVLTVEAAREHVLVDARGFSEDWSCKNLERMEGSCGGDGTVAWKKKRRKRRKEVG 120
Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAI 180
+KAEENW ALSSGPLRPGYLS KEEAELCLCLKEAAQLE AKTRIMETQEHEPTN+QLAI
Sbjct: 121 LKAEENWAALSSGPLRPGYLSPKEEAELCLCLKEAAQLEEAKTRIMETQEHEPTNRQLAI 180
Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSR 300
ERFEPNRGHKLSTYAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AEANNHLG+KLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEANNHLGLKLSR 300
Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVM 360
PPTHKEVAESLKV VSTVRLVTERSKRPISINQP NDRGCLTLQEIMPGPDNLTPE+MVM
Sbjct: 301 PPTHKEVAESLKVRVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMVM 360
Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLS 420
RKLMKQE+K+LLNTLSKREAHILSLYFGLNGEIP+SFEEIGKSLNLSRETIR+INVATLS
Sbjct: 361 RKLMKQEVKRLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRQINVATLS 420
Query: 421 KLKKTDILDYLKDYLV 437
KLK TDILDYLK+YLV
Sbjct: 421 KLKNTDILDYLKEYLV 436
BLAST of CcUC10G197310 vs. NCBI nr
Match:
XP_004149725.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus] >KGN58573.1 hypothetical protein Csa_000720 [Cucumis sativus])
HSP 1 Score: 791.6 bits (2043), Expect = 3.5e-225
Identity = 400/436 (91.74%), Postives = 415/436 (95.18%), Query Frame = 0
Query: 1 MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLG N ISNDTLTLP
Sbjct: 1 MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60
Query: 61 PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
PPPEAAVL VEAA EHVLVEA+GFSEDWS KN+E+MEESC GDGTVAWKKKRRKRRKEVG
Sbjct: 61 PPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVG 120
Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAI 180
VKAEENW+ALSSGPLRPGYLS KEEAELCLCLKEA LE KTRIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAI 180
Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
A+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSR 300
ERFEPNRGHKLSTYAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AE NNHLGIKLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300
Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVM 360
PPT+KEVAESLKVH+ST+RLV ERSKRPISINQP NDR CLTLQEIMPGPDNLTPE+MVM
Sbjct: 301 PPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVM 360
Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLS 420
RKLMKQELK+LLNTLSKREA ILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+ N+ATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLS 420
Query: 421 KLKKTDILDYLKDYLV 437
KLKKTD+LDYLKDYLV
Sbjct: 421 KLKKTDVLDYLKDYLV 436
BLAST of CcUC10G197310 vs. NCBI nr
Match:
KAA0048391.1 (RNA polymerase sigma factor sigD [Cucumis melo var. makuwa] >TYJ99868.1 RNA polymerase sigma factor sigD [Cucumis melo var. makuwa])
HSP 1 Score: 786.6 bits (2030), Expect = 1.1e-223
Identity = 398/436 (91.28%), Postives = 417/436 (95.64%), Query Frame = 0
Query: 1 MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLG NFIS DTLTLP
Sbjct: 1 MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLP 60
Query: 61 PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
PPPEAAVL VEAA EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVG
Sbjct: 61 PPPEAAVLAVEAAGEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVG 120
Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAI 180
VKAEENW+ALSSGPLRPGYLS KEEAELCLCLKEA LE+ K+RIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAI 180
Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
A+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKPGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSR 300
ERFEP+RGHKLSTYAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AE NNHLGIKLSR
Sbjct: 241 ERFEPSRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300
Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVM 360
PPT++EVAESLKV VSTVRLV ERSKRPISINQP NDR CLTLQEI+PGPDNLTPE+MVM
Sbjct: 301 PPTNEEVAESLKVRVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVM 360
Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLS 420
RKLMKQELK+LLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+IN+ATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLS 420
Query: 421 KLKKTDILDYLKDYLV 437
KLKKT++LDY+KDYLV
Sbjct: 421 KLKKTNVLDYIKDYLV 436
BLAST of CcUC10G197310 vs. NCBI nr
Match:
XP_008461821.1 (PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo])
HSP 1 Score: 766.1 bits (1977), Expect = 1.6e-217
Identity = 386/423 (91.25%), Postives = 405/423 (95.74%), Query Frame = 0
Query: 14 SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLPPPPEAAVLGVEAA 73
SPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLG NFIS DTLTLPPPPEAAVL VEAA
Sbjct: 51 SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLPPPPEAAVLAVEAA 110
Query: 74 REHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSG 133
EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVGVKAEENW+ALSSG
Sbjct: 111 GEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSG 170
Query: 134 PLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRIL 193
PLRPGYLS KEEAELCLCLKEA LE+ K+RIMETQEHEPTNKQLAIA+GTK G IDRIL
Sbjct: 171 PLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAIAMGTKPGCIDRIL 230
Query: 194 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLST 253
CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEP+RGHKLST
Sbjct: 231 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPSRGHKLST 290
Query: 254 YAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKV 313
YAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AE NNHLGIKLSRPPT++EVAESLKV
Sbjct: 291 YAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNEEVAESLKV 350
Query: 314 HVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLN 373
VSTVRLV ERSKRPISINQP NDR CLTLQEI+PGPDNLTPE+MVMRKLMKQELK+LLN
Sbjct: 351 RVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVMRKLMKQELKRLLN 410
Query: 374 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKD 433
TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+IN+ATLSKLKKT++LDY+KD
Sbjct: 411 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKD 470
Query: 434 YLV 437
YLV
Sbjct: 471 YLV 473
BLAST of CcUC10G197310 vs. NCBI nr
Match:
XP_023528248.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucurbita pepo subsp. pepo])
HSP 1 Score: 754.6 bits (1947), Expect = 4.7e-214
Identity = 384/437 (87.87%), Postives = 410/437 (93.82%), Query Frame = 0
Query: 1 MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHF PFSTKL NFI+NDTLT P
Sbjct: 1 MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60
Query: 61 PPPE-AAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEV 120
PP E AAVL VEAAREHVLVEA S+DW CKNLE+ME+SCGGDG VAWKK+RRKRRKEV
Sbjct: 61 PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120
Query: 121 GVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLA 180
G AEENWVALS+GPLRPG+LSSKEEAELCLCLKEAAQ+E+ KTRIMETQ+HEPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKIKTRIMETQDHEPTNKQLA 180
Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
IA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLS 300
AERFEPNRGHKLSTYAYWWIRQ II+ALDK SRLVRLPG+MGQMVAR+AEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMV 360
R PTHKEVA+ LKV VSTVRLVTERSKRPISINQP NDRGCLTLQEIMPGPDNLTPE+MV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360
Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATL 420
+RKLMKQELKKLLNTLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRETIR+ N+ATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
Query: 421 SKLKKTDILDYLKDYLV 437
+KLKK++ILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437
BLAST of CcUC10G197310 vs. ExPASy Swiss-Prot
Match:
Q9ZSL6 (RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGD PE=2 SV=1)
HSP 1 Score: 321.6 bits (823), Expect = 1.3e-86
Identity = 193/435 (44.37%), Postives = 271/435 (62.30%), Query Frame = 0
Query: 1 MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
MATT + T P+ P ++S L TH Q PFS KL + + DT T+
Sbjct: 1 MATTIPTTATATMCPSPPVPTISPL-LRTTHQCQPSPSLSSPFSIKLSTALVCGDT-TVD 60
Query: 61 PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
+++V+ + E G + K R V +++ + + G
Sbjct: 61 RVVDSSVM--------IKPEKWGIQSEKRRKRRRRRR--------VGYERLEPEEEENAG 120
Query: 121 VKAEENWVALS-SGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLA 180
V+AE +++ G R G+LS EE +LCL LKE A+LE T + +E+E + LA
Sbjct: 121 VEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSV---EENEMVSVLLA 180
Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
G K S + ILCR +E+R+++ RCY +LV+SIA YQGKGL+LQDL QEG+IGLL+G
Sbjct: 181 SGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRG 240
Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLS 300
AERF+P+RG+KLSTY YWWI+QAI+RA+ SRLV+LPG M ++ A++AEA+N L KL
Sbjct: 241 AERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLR 300
Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMV 360
R P+ +E+AE L ++VS VRL ERS+ P+S+++ + G +TLQEI+ GPD PE MV
Sbjct: 301 RQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMV 360
Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATL 420
R+ MK E+++LL +L+ RE+ +L LYFGLNGE P SFEEIGKSL LSRE +R+IN L
Sbjct: 361 KREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIAL 414
Query: 421 SKLKKTDILDYLKDY 435
KL+ ++ LK Y
Sbjct: 421 KKLRNVHNVNDLKIY 414
BLAST of CcUC10G197310 vs. ExPASy Swiss-Prot
Match:
P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)
HSP 1 Score: 199.5 bits (506), Expect = 7.7e-50
Identity = 115/340 (33.82%), Postives = 196/340 (57.65%), Query Frame = 0
Query: 97 EESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPL-RPGYLSSKEEAELCLCLKEA 156
E+S G D A K K + R+ E+ + L + R L + EE EL + +
Sbjct: 65 EDSVGEDEDAAAKAKAKVRKTYT-----EDSIRLYLQEIGRIRLLRADEEIELARQIADL 124
Query: 157 AQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIA 216
LER + ++E + P++ + A A+ + L R L R R ++D++++ +LV+SIA
Sbjct: 125 LALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIA 184
Query: 217 APYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVR 276
Y +GLS QDL QEG++GL++ AE+F+ +G+K STYA WWIRQAI RA+ SR +R
Sbjct: 185 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 244
Query: 277 LPGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPF 336
LP ++ + ++R+ + L ++ R PT +E+A +++ + +R + + ++ PIS+ P
Sbjct: 245 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 304
Query: 337 NDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQ 396
L + + D TPE V + L++++L+ +L+TLS RE +L L +GL+ +
Sbjct: 305 GKEEDSRLGDFIEA-DGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMK 364
Query: 397 SFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYL 436
+ EEIG+ N++RE IR+I L KL+ + LK+Y+
Sbjct: 365 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398
BLAST of CcUC10G197310 vs. ExPASy Swiss-Prot
Match:
P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)
HSP 1 Score: 197.2 bits (500), Expect = 3.8e-49
Identity = 111/339 (32.74%), Postives = 194/339 (57.23%), Query Frame = 0
Query: 97 EESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAA 156
+E G A ++R + +K+ + G +R L + EE EL + +
Sbjct: 54 DEDDAKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIR--LLRADEEIELARKIADLL 113
Query: 157 QLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAA 216
+LER + R+ E E +P + + A A+ L + L R ++D++++ +LV+SIA
Sbjct: 114 ELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAK 173
Query: 217 PYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRL 276
Y +GLS QDL QEG++GL++ AE+F+ +G+K STYA WWIRQAI RA+ SR +RL
Sbjct: 174 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 233
Query: 277 PGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFN 336
P ++ + ++R+ + L ++ R PT +E+A +++ + +R + + ++ PIS+ P
Sbjct: 234 PVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 293
Query: 337 DRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQS 396
L + + D TPE V + L++++L+K+L++LS RE +L L +GL+ ++
Sbjct: 294 KEEDSRLGDFIES-DGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKT 353
Query: 397 FEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYL 436
EEIG+ N++RE IR+I L KL+ + LK+Y+
Sbjct: 354 LEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
BLAST of CcUC10G197310 vs. ExPASy Swiss-Prot
Match:
O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)
HSP 1 Score: 191.4 bits (485), Expect = 2.1e-47
Identity = 112/346 (32.37%), Postives = 196/346 (56.65%), Query Frame = 0
Query: 91 KNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCL 150
K LE+ T + KK+R +EV ++ +++ + L+ +EE EL
Sbjct: 226 KGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSA 285
Query: 151 CLKEAAQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKL 210
+++ +LER +T + E +PT Q A A G S+ + + +D++I+ +L
Sbjct: 286 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 345
Query: 211 VISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKN 270
VISIA YQG G++LQDL QEG GL++GAE+F+ +G K STYA+WWI+QA+ ++L
Sbjct: 346 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 405
Query: 271 SRLVRLPGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPIS 330
SR++RLP +M + R+ EA L + + P ++E+AE+ + + + V K P S
Sbjct: 406 SRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRS 465
Query: 331 INQPFNDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLN 390
++Q L E++ P+ +T E +++++ M+Q+L K+L++L RE ++ FG+
Sbjct: 466 LDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGME 525
Query: 391 GEIPQSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYLV 437
++ +EIG+ + +SRE +R+I + KLK ++L+ YLV
Sbjct: 526 DGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569
BLAST of CcUC10G197310 vs. ExPASy Swiss-Prot
Match:
Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)
HSP 1 Score: 187.6 bits (475), Expect = 3.0e-46
Identity = 110/322 (34.16%), Postives = 182/322 (56.52%), Query Frame = 0
Query: 103 DGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAK 162
+G V K +K+ K+ G ++ GP L++KEEAEL ++ +LE+ K
Sbjct: 212 EGYVPQKTSAKKKYKQ-GADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVK 271
Query: 163 TRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKG 222
T++ EPT + A A+G + + R R SR++LI +LV+ IA YQ +G
Sbjct: 272 TKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRG 331
Query: 223 LSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQ 282
L+ QDL QEG++GL+K E+F+P G + +TYAYWWIRQ+I +++ +NSR +RLP +
Sbjct: 332 LNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYM 391
Query: 283 MVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLT 342
++ +++EA + + P+ +E+A + V + + ++ P+S+ QP T
Sbjct: 392 LLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTT 451
Query: 343 LQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGK 402
QEI P TP V ++LM+ ++ LLN LS +E I+ L FG++G +S EIG+
Sbjct: 452 FQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGE 511
Query: 403 SLNLSRETIRKINVATLSKLKK 425
LS+E +R++ L +LK+
Sbjct: 512 IYGLSKERVRQLESRALYRLKQ 532
BLAST of CcUC10G197310 vs. ExPASy TrEMBL
Match:
A0A0A0L9T0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1)
HSP 1 Score: 791.6 bits (2043), Expect = 1.7e-225
Identity = 400/436 (91.74%), Postives = 415/436 (95.18%), Query Frame = 0
Query: 1 MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLG N ISNDTLTLP
Sbjct: 1 MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60
Query: 61 PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
PPPEAAVL VEAA EHVLVEA+GFSEDWS KN+E+MEESC GDGTVAWKKKRRKRRKEVG
Sbjct: 61 PPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVG 120
Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAI 180
VKAEENW+ALSSGPLRPGYLS KEEAELCLCLKEA LE KTRIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAI 180
Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
A+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSR 300
ERFEPNRGHKLSTYAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AE NNHLGIKLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300
Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVM 360
PPT+KEVAESLKVH+ST+RLV ERSKRPISINQP NDR CLTLQEIMPGPDNLTPE+MVM
Sbjct: 301 PPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVM 360
Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLS 420
RKLMKQELK+LLNTLSKREA ILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+ N+ATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLS 420
Query: 421 KLKKTDILDYLKDYLV 437
KLKKTD+LDYLKDYLV
Sbjct: 421 KLKKTDVLDYLKDYLV 436
BLAST of CcUC10G197310 vs. ExPASy TrEMBL
Match:
A0A5D3BP27 (RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00100 PE=3 SV=1)
HSP 1 Score: 786.6 bits (2030), Expect = 5.5e-224
Identity = 398/436 (91.28%), Postives = 417/436 (95.64%), Query Frame = 0
Query: 1 MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLG NFIS DTLTLP
Sbjct: 1 MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLP 60
Query: 61 PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
PPPEAAVL VEAA EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVG
Sbjct: 61 PPPEAAVLAVEAAGEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVG 120
Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAI 180
VKAEENW+ALSSGPLRPGYLS KEEAELCLCLKEA LE+ K+RIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAI 180
Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
A+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKPGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSR 300
ERFEP+RGHKLSTYAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AE NNHLGIKLSR
Sbjct: 241 ERFEPSRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300
Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVM 360
PPT++EVAESLKV VSTVRLV ERSKRPISINQP NDR CLTLQEI+PGPDNLTPE+MVM
Sbjct: 301 PPTNEEVAESLKVRVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVM 360
Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLS 420
RKLMKQELK+LLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+IN+ATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLS 420
Query: 421 KLKKTDILDYLKDYLV 437
KLKKT++LDY+KDYLV
Sbjct: 421 KLKKTNVLDYIKDYLV 436
BLAST of CcUC10G197310 vs. ExPASy TrEMBL
Match:
A0A1S3CFL7 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500331 PE=3 SV=1)
HSP 1 Score: 766.1 bits (1977), Expect = 7.6e-218
Identity = 386/423 (91.25%), Postives = 405/423 (95.74%), Query Frame = 0
Query: 14 SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLPPPPEAAVLGVEAA 73
SPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLG NFIS DTLTLPPPPEAAVL VEAA
Sbjct: 51 SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLPPPPEAAVLAVEAA 110
Query: 74 REHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSG 133
EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVGVKAEENW+ALSSG
Sbjct: 111 GEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSG 170
Query: 134 PLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRIL 193
PLRPGYLS KEEAELCLCLKEA LE+ K+RIMETQEHEPTNKQLAIA+GTK G IDRIL
Sbjct: 171 PLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAIAMGTKPGCIDRIL 230
Query: 194 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLST 253
CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEP+RGHKLST
Sbjct: 231 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPSRGHKLST 290
Query: 254 YAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKV 313
YAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AE NNHLGIKLSRPPT++EVAESLKV
Sbjct: 291 YAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNEEVAESLKV 350
Query: 314 HVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLN 373
VSTVRLV ERSKRPISINQP NDR CLTLQEI+PGPDNLTPE+MVMRKLMKQELK+LLN
Sbjct: 351 RVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVMRKLMKQELKRLLN 410
Query: 374 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKD 433
TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+IN+ATLSKLKKT++LDY+KD
Sbjct: 411 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKD 470
Query: 434 YLV 437
YLV
Sbjct: 471 YLV 473
BLAST of CcUC10G197310 vs. ExPASy TrEMBL
Match:
A0A6J1J3P0 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481519 PE=3 SV=1)
HSP 1 Score: 752.7 bits (1942), Expect = 8.7e-214
Identity = 383/437 (87.64%), Postives = 410/437 (93.82%), Query Frame = 0
Query: 1 MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHF PFSTKL NFISNDTLT P
Sbjct: 1 MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60
Query: 61 PPPE-AAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEV 120
PP E AAVL VEAAREHVLVEA S+DW CKNLE+ME+SCGGDG VAWKK+RRKRRKEV
Sbjct: 61 PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120
Query: 121 GVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLA 180
G AEENWVALSSGPLRPG+LSSKEEAELCLCLKEAAQ+E+ KTRIMETQ+HEPTNKQLA
Sbjct: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180
Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
IA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLS 300
AERFEPNRGHKLSTYAYWWIRQ II+ALDK SRLVRLPG+MGQMVAR+AEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMV 360
R PTHKEVA+ LKV VSTVRLVTERSKRPISIN+P NDRGCLTLQEIMPGPDNLTPE+MV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360
Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATL 420
+RKLMKQELK+LL+TLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRETIR+ N+ATL
Sbjct: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
Query: 421 SKLKKTDILDYLKDYLV 437
+KLKK++ILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437
BLAST of CcUC10G197310 vs. ExPASy TrEMBL
Match:
A0A6J1FAN3 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442316 PE=3 SV=1)
HSP 1 Score: 752.3 bits (1941), Expect = 1.1e-213
Identity = 383/437 (87.64%), Postives = 410/437 (93.82%), Query Frame = 0
Query: 1 MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHF PFSTKL NFI+NDTLT P
Sbjct: 1 MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60
Query: 61 PPPE-AAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEV 120
PP E AAVL VEAAREHVLVEA S+DWSCKNLE+ME+SCGG G VAWKK+RRKRRKEV
Sbjct: 61 PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQSCGGAGNVAWKKRRRKRRKEV 120
Query: 121 GVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLA 180
G AEENWVALS+GPLRPG+LSSKEEAELCLCLKEAAQ+E+ KTRIMETQEHEPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKIKTRIMETQEHEPTNKQLA 180
Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
IA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLS 300
AERFEPNRGHKLSTYAYWWIRQ II+ALDK SRLVRLPG+MGQMVA++AEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVAKIAEANNHLGIKLS 300
Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMV 360
R PTHKEVA+ LKV VSTVRLVTER+KRPISINQP NDRGCLTLQEIMPGPDNLTPE+MV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERNKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360
Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATL 420
+RKLMKQELKKLLNTLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRETIR+ N+ATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
Query: 421 SKLKKTDILDYLKDYLV 437
+KLKK++ILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437
BLAST of CcUC10G197310 vs. TAIR 10
Match:
AT5G13730.1 (sigma factor 4 )
HSP 1 Score: 321.6 bits (823), Expect = 9.6e-88
Identity = 193/435 (44.37%), Postives = 271/435 (62.30%), Query Frame = 0
Query: 1 MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
MATT + T P+ P ++S L TH Q PFS KL + + DT T+
Sbjct: 1 MATTIPTTATATMCPSPPVPTISPL-LRTTHQCQPSPSLSSPFSIKLSTALVCGDT-TVD 60
Query: 61 PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
+++V+ + E G + K R V +++ + + G
Sbjct: 61 RVVDSSVM--------IKPEKWGIQSEKRRKRRRRRR--------VGYERLEPEEEENAG 120
Query: 121 VKAEENWVALS-SGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLA 180
V+AE +++ G R G+LS EE +LCL LKE A+LE T + +E+E + LA
Sbjct: 121 VEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSV---EENEMVSVLLA 180
Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
G K S + ILCR +E+R+++ RCY +LV+SIA YQGKGL+LQDL QEG+IGLL+G
Sbjct: 181 SGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRG 240
Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLS 300
AERF+P+RG+KLSTY YWWI+QAI+RA+ SRLV+LPG M ++ A++AEA+N L KL
Sbjct: 241 AERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLR 300
Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMV 360
R P+ +E+AE L ++VS VRL ERS+ P+S+++ + G +TLQEI+ GPD PE MV
Sbjct: 301 RQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMV 360
Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATL 420
R+ MK E+++LL +L+ RE+ +L LYFGLNGE P SFEEIGKSL LSRE +R+IN L
Sbjct: 361 KREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIAL 414
Query: 421 SKLKKTDILDYLKDY 435
KL+ ++ LK Y
Sbjct: 421 KKLRNVHNVNDLKIY 414
BLAST of CcUC10G197310 vs. TAIR 10
Match:
AT1G08540.1 (RNApolymerase sigma subunit 2 )
HSP 1 Score: 191.4 bits (485), Expect = 1.5e-48
Identity = 112/346 (32.37%), Postives = 196/346 (56.65%), Query Frame = 0
Query: 91 KNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCL 150
K LE+ T + KK+R +EV ++ +++ + L+ +EE EL
Sbjct: 226 KGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSA 285
Query: 151 CLKEAAQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKL 210
+++ +LER +T + E +PT Q A A G S+ + + +D++I+ +L
Sbjct: 286 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 345
Query: 211 VISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKN 270
VISIA YQG G++LQDL QEG GL++GAE+F+ +G K STYA+WWI+QA+ ++L
Sbjct: 346 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 405
Query: 271 SRLVRLPGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPIS 330
SR++RLP +M + R+ EA L + + P ++E+AE+ + + + V K P S
Sbjct: 406 SRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRS 465
Query: 331 INQPFNDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLN 390
++Q L E++ P+ +T E +++++ M+Q+L K+L++L RE ++ FG+
Sbjct: 466 LDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGME 525
Query: 391 GEIPQSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYLV 437
++ +EIG+ + +SRE +R+I + KLK ++L+ YLV
Sbjct: 526 DGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569
BLAST of CcUC10G197310 vs. TAIR 10
Match:
AT2G36990.1 (RNApolymerase sigma-subunit F )
HSP 1 Score: 187.6 bits (475), Expect = 2.2e-47
Identity = 110/322 (34.16%), Postives = 182/322 (56.52%), Query Frame = 0
Query: 103 DGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAK 162
+G V K +K+ K+ G ++ GP L++KEEAEL ++ +LE+ K
Sbjct: 212 EGYVPQKTSAKKKYKQ-GADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVK 271
Query: 163 TRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKG 222
T++ EPT + A A+G + + R R SR++LI +LV+ IA YQ +G
Sbjct: 272 TKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRG 331
Query: 223 LSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQ 282
L+ QDL QEG++GL+K E+F+P G + +TYAYWWIRQ+I +++ +NSR +RLP +
Sbjct: 332 LNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYM 391
Query: 283 MVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLT 342
++ +++EA + + P+ +E+A + V + + ++ P+S+ QP T
Sbjct: 392 LLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTT 451
Query: 343 LQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGK 402
QEI P TP V ++LM+ ++ LLN LS +E I+ L FG++G +S EIG+
Sbjct: 452 FQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGE 511
Query: 403 SLNLSRETIRKINVATLSKLKK 425
LS+E +R++ L +LK+
Sbjct: 512 IYGLSKERVRQLESRALYRLKQ 532
BLAST of CcUC10G197310 vs. TAIR 10
Match:
AT1G64860.1 (sigma factor A )
HSP 1 Score: 149.4 bits (376), Expect = 6.5e-36
Identity = 114/380 (30.00%), Postives = 184/380 (48.42%), Query Frame = 0
Query: 77 VLVEARGFSEDWSCKNLERMEESCGGDGTVAWKK-------KRRKRRKEVGVKAEENWV- 136
+L++ + W+ + + G GT+ KK R++ +G K + N
Sbjct: 115 LLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTH 174
Query: 137 -----ALSSGPLRPGY---------LSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPT 196
+SSG GY LS E L +K +L+ K+R+ + EP+
Sbjct: 175 VKAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPS 234
Query: 197 NKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNI 256
++QLA++L + L +R++L +LV+SIA Y G + DL Q G I
Sbjct: 235 DEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLI 294
Query: 257 GLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHL 316
GLL+G E+F+ ++G ++STY YWWIRQ + RAL NSR +RLP ++ + + + A L
Sbjct: 295 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL 354
Query: 317 GIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLT 376
K P+ +AESL + VR TE + S+ DR +PG + +
Sbjct: 355 QEK-GITPSIDRIAESLNMSQKKVRNATEAVSKVFSL-----DRDAFPSLNGLPGETHHS 414
Query: 377 ----------PESMVMRKLMKQELKKLLN-TLSKREAHILSLYFGLNGEIPQSFEEIGKS 424
P +K+E+ KL++ TL +RE I+ LY+GL+ E ++E+I K
Sbjct: 415 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKR 474
BLAST of CcUC10G197310 vs. TAIR 10
Match:
AT3G53920.1 (RNApolymerase sigma-subunit C )
HSP 1 Score: 137.9 bits (346), Expect = 2.0e-32
Identity = 93/298 (31.21%), Postives = 154/298 (51.68%), Query Frame = 0
Query: 142 SKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRD 201
S+ E E+ +K A +ER +T++ E + A A G + R L RD
Sbjct: 275 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRD 334
Query: 202 RLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQ 261
L++ LV+ +A Y+G G++ +DL Q G +G+L+GAERF+ RG+K STY +WIR+
Sbjct: 335 ELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRK 394
Query: 262 AIIRALDKNSRLVRLPGYMGQMVARLAEANNHL----GIKLSRPPTHKEVAESLKVHVST 321
++ + +++R V +P + + + + +A L GIK + +E+A+ V
Sbjct: 395 SMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYA---ADEEIAKLTGHSVKK 454
Query: 322 VRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSK 381
+R + K SI++ D E P +PE VMR+ ++++ LL L
Sbjct: 455 IRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEP 514
Query: 382 REAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYL 436
RE ++ L +GL P+S EEIGK L +S+E IRKI ++KL+ + L+ YL
Sbjct: 515 REKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038906215.1 | 3.5e-233 | 94.72 | RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida] | [more] |
XP_004149725.1 | 3.5e-225 | 91.74 | RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus] >KGN58573.1 hy... | [more] |
KAA0048391.1 | 1.1e-223 | 91.28 | RNA polymerase sigma factor sigD [Cucumis melo var. makuwa] >TYJ99868.1 RNA poly... | [more] |
XP_008461821.1 | 1.6e-217 | 91.25 | PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo] | [more] |
XP_023528248.1 | 4.7e-214 | 87.87 | RNA polymerase sigma factor sigD, chloroplastic [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Q9ZSL6 | 1.3e-86 | 44.37 | RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 ... | [more] |
P38023 | 7.7e-50 | 33.82 | RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ... | [more] |
P26683 | 3.8e-49 | 32.74 | RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT... | [more] |
O22056 | 2.1e-47 | 32.37 | RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV... | [more] |
Q9LD95 | 3.0e-46 | 34.16 | RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0L9T0 | 1.7e-225 | 91.74 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1 | [more] |
A0A5D3BP27 | 5.5e-224 | 91.28 | RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A1S3CFL7 | 7.6e-218 | 91.25 | RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A6J1J3P0 | 8.7e-214 | 87.64 | RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=L... | [more] |
A0A6J1FAN3 | 1.1e-213 | 87.64 | RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita moschata OX=3662 GN... | [more] |