CcUC10G197310 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC10G197310
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRNA polymerase sigma factor sigD
LocationCicolChr10: 23894521 .. 23897979 (+)
RNA-Seq ExpressionCcUC10G197310
SyntenyCcUC10G197310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACTACCAGCAGCTTATGTTCATTACCGACTCAATCCCCAACTCTCCCATCCATTTCTCTCTCCTCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCCCCTTTCCCCCTTTCTCCACCAAATTAGGCTCCAACTTCATCAGCAATGACACATTAACCCTTCCTCCGCCGCCCGAGGCGGCTGTTCTGGGGGTAGAAGCGGCGAGAGAACATGTTCTGGTGGAAGCAAGAGGGTTTTCTGAAGATTGGAGCTGCAAAAACCTTGAGAGAATGGAGGAGAGTTGTGGGGGTGATGGTACTGTGGCTTGGAAGAAGAAGAGAAGGAAAAGGAGGAAAGAAGTGGGGGTGAAAGCTGAGGAAAATTGGGTTGCCTTGTCCAGTGGTCCCTTGAGACCTGGATATTTGAGCTCAAAAGAAGAAGCAGAGCTTTGTCTTTGTCTAAAGGTGGGTTTTACTAAAGATTTAATGAGTTTTTTTCGTCCTTGTCTGTGCCACATTGCAACCATTTACTTCTTTAGGGAGCTTGATTGAGGATCACATATATTTGTATGCAAAACACTGCAAAACTCTCTTCCTCTCATCTTTGTTAATACGTGCATGTATATATTTTGATAGGTATGTTAATTGGAATAAGGATATATTAGTAATTAGTTAAAGAGTTTGTTATGCTTGTTGGTTATAAATAGCGAAGGTTGAGGAATGAAGAAGATAAGCAATATTTTGTGGAATGAATTAGGAGATAAGCAATAGATTGGGAGGGTCCAAGTACCTGAATTCTTGGTTTATCTTGTCGTTTGGTTACTTTTATCTTTCAACACATTTCTATCCTATTTCTTCTTACAGCTTATAAGGTGTCCTAGTGGAAGAGGAAAGAAGGATTTCTTCTTATTTGGTTGTGGTTTGCGTTAGTCTTAAATGCTAGAACTTCAAGTACTTCGTTTTGTTCCCCAATTTTTTGTTTACACCTGATTTGCTTAGATTGTTGTTAAGTATTCACATTGTATGCCAAACTCAATGTAAGTGGCTTAGAATACAAGTTTGTATTCTTGAGAGAGGTCAAAACAAAAATGACAGTGTAGAAGTTGAGGGACCAAGATAAAATCAAGTCTTCTGCACCAATATCCTTTAAGATCATGTAAGATTGTCTGCCATGTTAATATATAAAGGAAAGCTTCTGCATATCATAAACTCTTCACAGGAGGCAGCACAGCTTGAAAGGGCAAAAACTAGAATCATGGAAACTCAAGAGCATGAACCTACAAATAAGCAATTAGCCATTGCCCTGGGCACCAAATTAGGGAGTATTGATAGAATTCTTTGTAGAGCAAGAGAATCAAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCAATTGCTGCTCCATATCAAGGCAAAGGGTTAAGCCTTCAAGACCTGACTCAGGTAGGTTGTTGCACATTTTACCTCTTTTGGATTGTTGTTTTCAGTAGTTCGTTTAAACGGTTTGTTTGTTTTCGTAGGAAGGGAACATTGGTCTTCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCAACTTATGCTTATTGGTGGATAAGACAAGCTATAATTCGAGCTTTGGATAAAAATTCAAGACTTGTTAGACTGCCGGTAAGATACTGCCTCGATTTCTCATTTGTCAAATTCCAATGCTTTATGCATTTTGCATTCAAAAAGAAGAAAAAAAATATAATGATCATATAGAAGGTGTAGAGAAGAAGTTTCAAATCATATTTAGTTTTTGAGGCAAAATTTGCATTTGTAGTATTAGCTCTTCTGAATGCATTGAAAATAAGAACACAATCTGTATCCTGTTCGGTTAGAAAGCACTCATCTTAGGCTAGGCTCTTATGTTTATTGGTAGGTTTTAGTGACAAAGCTTTTTTGTGATTATCCATTGGGCCTTTTTACTTGATTGGAGCCCTTTTTGTGGTTTGCCTCCTTTCGTGGACTCTCTTTTTTGTATGCGCTTATATTATTTCATTTTTCTCAATAAAAGTTCAGTTGAAAAGAAAAACCAACTTAATGAGCAGCAAACTAAGTTGGATTTATGACTAGACTCATAGAGATCAAGTTGATAAGACCCTTTTGTTATATCACCTTTTCACAAAAATGGGATTAGTAATGATTGTTCAGAAGATCTGTTTTTTGTTTCCATTTCCACAAAGTTTTGTTAGCTGAGGAAATTTCAAGTATGGGAAAGTGTGCTGGTAATAACTGAATGCTTGGGTAGCTCGCTGTGTTCAGGGTTACATGGGTCAGATGGTAGCAAGACTAGCAGAAGCAAATAATCATCTCGGCATAAAGTTATCACGACCGCCCACCCACAAGGAAGTTGCTGAATCTCTTAAAGTCCATGTTTCAACCGTAAGACTGGTTACGGAAAGGAGTAAGCGGCCAATTTCAATCAATCAACCATTCAACGACCGAGGTTGCTTAACCCTGCAGGTACTGTTTACAAAGGTCAAGCTTAGTTTTTTACTAGAGGGGATACCCACTTTTTCATTCTTCTCTATATCTATTGTACAATGACAACATCTGCAAGGAATCTCATGTTTGCAACTAGCTTTTGATCTTTGGGAACTGGGATTCAGGCTCTCTTCCATTCGTTCACAAAACTAGTAATCGATGACATTTCCCACATGGTCATCCATAACTAAAGTAATCCTATGTTTTTATCTCCTCTGTTTAATATCTCCAAATGAGAGGTTGAACCAATAAGTTATCTTTTCAATAAGATTGCTACACTTGGGGTTTGCTTATTTTAATATCAGAAAGAATTAAGTTATAAAGAAGTCTGAGTAATTTTATTAGACAACTGTCTTAATCCTAGGTAGATAGCTACTACGGAAAATAGTAGCTAACTTGTATGGTTACGTTTTTATTTCAGTGACTAAGGGTGTGTTTGGAATATATTTTCAAGTGCTTAATTTAAAAAATAAGTCATTTAGAAAAAATTGAAGTGTTTGGTAACTACTAAAAATGAATTTTGAAGTGTATTTTTTAAATAGTTTTTATTGAAAGAGTTTAAATAAAAATGAGTTCTTTCAAAAACATTTTTTCTCAAGTCAATCCAAACGGGCCCTAAGATAAGATGTTGAAATACTTTTTCTTCTCAATGTTCTGCAGGAGATCATGCCTGGACCGGACAATTTGACTCCAGAGAGTATGGTAATGAGAAAACTGATGAAGCAAGAACTGAAGAAGCTTCTTAATACTCTTAGCAAACGAGAAGCACATATATTGAGCTTGTACTTTGGCCTCAATGGAGAGATTCCTCAGTCCTTTGAGGAGATAGGCAAGTCGTTGAATCTCTCTCGAGAGACGATTCGAAAAATCAATGTCGCCACGTTGTCAAAACTAAAGAAGACCGACATTCTGGACTATCTTAAGGATTATCTAGTGTAG

mRNA sequence

ATGGCCACTACCAGCAGCTTATGTTCATTACCGACTCAATCCCCAACTCTCCCATCCATTTCTCTCTCCTCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCCCCTTTCCCCCTTTCTCCACCAAATTAGGCTCCAACTTCATCAGCAATGACACATTAACCCTTCCTCCGCCGCCCGAGGCGGCTGTTCTGGGGGTAGAAGCGGCGAGAGAACATGTTCTGGTGGAAGCAAGAGGGTTTTCTGAAGATTGGAGCTGCAAAAACCTTGAGAGAATGGAGGAGAGTTGTGGGGGTGATGGTACTGTGGCTTGGAAGAAGAAGAGAAGGAAAAGGAGGAAAGAAGTGGGGGTGAAAGCTGAGGAAAATTGGGTTGCCTTGTCCAGTGGTCCCTTGAGACCTGGATATTTGAGCTCAAAAGAAGAAGCAGAGCTTTGTCTTTGTCTAAAGGAGGCAGCACAGCTTGAAAGGGCAAAAACTAGAATCATGGAAACTCAAGAGCATGAACCTACAAATAAGCAATTAGCCATTGCCCTGGGCACCAAATTAGGGAGTATTGATAGAATTCTTTGTAGAGCAAGAGAATCAAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCAATTGCTGCTCCATATCAAGGCAAAGGGTTAAGCCTTCAAGACCTGACTCAGGAAGGGAACATTGGTCTTCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCAACTTATGCTTATTGGTGGATAAGACAAGCTATAATTCGAGCTTTGGATAAAAATTCAAGACTTGTTAGACTGCCGGGTTACATGGGTCAGATGGTAGCAAGACTAGCAGAAGCAAATAATCATCTCGGCATAAAGTTATCACGACCGCCCACCCACAAGGAAGTTGCTGAATCTCTTAAAGTCCATGTTTCAACCGTAAGACTGGTTACGGAAAGGAGTAAGCGGCCAATTTCAATCAATCAACCATTCAACGACCGAGGTTGCTTAACCCTGCAGGAGATCATGCCTGGACCGGACAATTTGACTCCAGAGAGTATGGTAATGAGAAAACTGATGAAGCAAGAACTGAAGAAGCTTCTTAATACTCTTAGCAAACGAGAAGCACATATATTGAGCTTGTACTTTGGCCTCAATGGAGAGATTCCTCAGTCCTTTGAGGAGATAGGCAAGTCGTTGAATCTCTCTCGAGAGACGATTCGAAAAATCAATGTCGCCACGTTGTCAAAACTAAAGAAGACCGACATTCTGGACTATCTTAAGGATTATCTAGTGTAG

Coding sequence (CDS)

ATGGCCACTACCAGCAGCTTATGTTCATTACCGACTCAATCCCCAACTCTCCCATCCATTTCTCTCTCCTCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCCCCTTTCCCCCTTTCTCCACCAAATTAGGCTCCAACTTCATCAGCAATGACACATTAACCCTTCCTCCGCCGCCCGAGGCGGCTGTTCTGGGGGTAGAAGCGGCGAGAGAACATGTTCTGGTGGAAGCAAGAGGGTTTTCTGAAGATTGGAGCTGCAAAAACCTTGAGAGAATGGAGGAGAGTTGTGGGGGTGATGGTACTGTGGCTTGGAAGAAGAAGAGAAGGAAAAGGAGGAAAGAAGTGGGGGTGAAAGCTGAGGAAAATTGGGTTGCCTTGTCCAGTGGTCCCTTGAGACCTGGATATTTGAGCTCAAAAGAAGAAGCAGAGCTTTGTCTTTGTCTAAAGGAGGCAGCACAGCTTGAAAGGGCAAAAACTAGAATCATGGAAACTCAAGAGCATGAACCTACAAATAAGCAATTAGCCATTGCCCTGGGCACCAAATTAGGGAGTATTGATAGAATTCTTTGTAGAGCAAGAGAATCAAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCAATTGCTGCTCCATATCAAGGCAAAGGGTTAAGCCTTCAAGACCTGACTCAGGAAGGGAACATTGGTCTTCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCAACTTATGCTTATTGGTGGATAAGACAAGCTATAATTCGAGCTTTGGATAAAAATTCAAGACTTGTTAGACTGCCGGGTTACATGGGTCAGATGGTAGCAAGACTAGCAGAAGCAAATAATCATCTCGGCATAAAGTTATCACGACCGCCCACCCACAAGGAAGTTGCTGAATCTCTTAAAGTCCATGTTTCAACCGTAAGACTGGTTACGGAAAGGAGTAAGCGGCCAATTTCAATCAATCAACCATTCAACGACCGAGGTTGCTTAACCCTGCAGGAGATCATGCCTGGACCGGACAATTTGACTCCAGAGAGTATGGTAATGAGAAAACTGATGAAGCAAGAACTGAAGAAGCTTCTTAATACTCTTAGCAAACGAGAAGCACATATATTGAGCTTGTACTTTGGCCTCAATGGAGAGATTCCTCAGTCCTTTGAGGAGATAGGCAAGTCGTTGAATCTCTCTCGAGAGACGATTCGAAAAATCAATGTCGCCACGTTGTCAAAACTAAAGAAGACCGACATTCTGGACTATCTTAAGGATTATCTAGTGTAG

Protein sequence

MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLPPPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYLV
Homology
[Close]
BLAST of CcUC10G197310 vs. NCBI nr
Match: XP_038906215.1 (RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida])

HSP 1 Score: 818.1 bits (2112), Expect = 3.5e-233
Identity = 413/436 (94.72%), Postives = 427/436 (97.94%), Query Frame = 0 

Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLG+NFI+NDTLTLP
Sbjct: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGTNFINNDTLTLP 60

Query: 61  PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
           PPPEAAVL VEAAREHVLV+ARGFSEDWSCKNLERME SCGGDGTVAWKKKRRKRRKEVG
Sbjct: 61  PPPEAAVLTVEAAREHVLVDARGFSEDWSCKNLERMEGSCGGDGTVAWKKKRRKRRKEVG 120

Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAI 180
           +KAEENW ALSSGPLRPGYLS KEEAELCLCLKEAAQLE AKTRIMETQEHEPTN+QLAI
Sbjct: 121 LKAEENWAALSSGPLRPGYLSPKEEAELCLCLKEAAQLEEAKTRIMETQEHEPTNRQLAI 180

Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
           ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSR 300
           ERFEPNRGHKLSTYAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AEANNHLG+KLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEANNHLGLKLSR 300

Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVM 360
           PPTHKEVAESLKV VSTVRLVTERSKRPISINQP NDRGCLTLQEIMPGPDNLTPE+MVM
Sbjct: 301 PPTHKEVAESLKVRVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMVM 360

Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLS 420
           RKLMKQE+K+LLNTLSKREAHILSLYFGLNGEIP+SFEEIGKSLNLSRETIR+INVATLS
Sbjct: 361 RKLMKQEVKRLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRQINVATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLK TDILDYLK+YLV
Sbjct: 421 KLKNTDILDYLKEYLV 436

[Close]
BLAST of CcUC10G197310 vs. NCBI nr
Match: XP_004149725.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus] >KGN58573.1 hypothetical protein Csa_000720 [Cucumis sativus])

HSP 1 Score: 791.6 bits (2043), Expect = 3.5e-225
Identity = 400/436 (91.74%), Postives = 415/436 (95.18%), Query Frame = 0 

Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLG N ISNDTLTLP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60

Query: 61  PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
           PPPEAAVL VEAA EHVLVEA+GFSEDWS KN+E+MEESC GDGTVAWKKKRRKRRKEVG
Sbjct: 61  PPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVG 120

Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAI 180
           VKAEENW+ALSSGPLRPGYLS KEEAELCLCLKEA  LE  KTRIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAI 180

Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
           A+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSR 300
           ERFEPNRGHKLSTYAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AE NNHLGIKLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300

Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVM 360
           PPT+KEVAESLKVH+ST+RLV ERSKRPISINQP NDR CLTLQEIMPGPDNLTPE+MVM
Sbjct: 301 PPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVM 360

Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLS 420
           RKLMKQELK+LLNTLSKREA ILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+ N+ATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKTD+LDYLKDYLV
Sbjct: 421 KLKKTDVLDYLKDYLV 436

[Close]
BLAST of CcUC10G197310 vs. NCBI nr
Match: KAA0048391.1 (RNA polymerase sigma factor sigD [Cucumis melo var. makuwa] >TYJ99868.1 RNA polymerase sigma factor sigD [Cucumis melo var. makuwa])

HSP 1 Score: 786.6 bits (2030), Expect = 1.1e-223
Identity = 398/436 (91.28%), Postives = 417/436 (95.64%), Query Frame = 0 

Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLG NFIS DTLTLP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLP 60

Query: 61  PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
           PPPEAAVL VEAA EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVG
Sbjct: 61  PPPEAAVLAVEAAGEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVG 120

Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAI 180
           VKAEENW+ALSSGPLRPGYLS KEEAELCLCLKEA  LE+ K+RIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAI 180

Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
           A+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKPGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSR 300
           ERFEP+RGHKLSTYAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AE NNHLGIKLSR
Sbjct: 241 ERFEPSRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300

Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVM 360
           PPT++EVAESLKV VSTVRLV ERSKRPISINQP NDR CLTLQEI+PGPDNLTPE+MVM
Sbjct: 301 PPTNEEVAESLKVRVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVM 360

Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLS 420
           RKLMKQELK+LLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+IN+ATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKT++LDY+KDYLV
Sbjct: 421 KLKKTNVLDYIKDYLV 436

[Close]
BLAST of CcUC10G197310 vs. NCBI nr
Match: XP_008461821.1 (PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo])

HSP 1 Score: 766.1 bits (1977), Expect = 1.6e-217
Identity = 386/423 (91.25%), Postives = 405/423 (95.74%), Query Frame = 0 

Query: 14  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLPPPPEAAVLGVEAA 73
           SPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLG NFIS DTLTLPPPPEAAVL VEAA
Sbjct: 51  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLPPPPEAAVLAVEAA 110

Query: 74  REHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSG 133
            EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVGVKAEENW+ALSSG
Sbjct: 111 GEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSG 170

Query: 134 PLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRIL 193
           PLRPGYLS KEEAELCLCLKEA  LE+ K+RIMETQEHEPTNKQLAIA+GTK G IDRIL
Sbjct: 171 PLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAIAMGTKPGCIDRIL 230

Query: 194 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLST 253
           CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEP+RGHKLST
Sbjct: 231 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPSRGHKLST 290

Query: 254 YAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKV 313
           YAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AE NNHLGIKLSRPPT++EVAESLKV
Sbjct: 291 YAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNEEVAESLKV 350

Query: 314 HVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLN 373
            VSTVRLV ERSKRPISINQP NDR CLTLQEI+PGPDNLTPE+MVMRKLMKQELK+LLN
Sbjct: 351 RVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVMRKLMKQELKRLLN 410

Query: 374 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKD 433
           TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+IN+ATLSKLKKT++LDY+KD
Sbjct: 411 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKD 470

Query: 434 YLV 437
           YLV
Sbjct: 471 YLV 473

[Close]
BLAST of CcUC10G197310 vs. NCBI nr
Match: XP_023528248.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 754.6 bits (1947), Expect = 4.7e-214
Identity = 384/437 (87.87%), Postives = 410/437 (93.82%), Query Frame = 0 

Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL  NFI+NDTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPPE-AAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEV 120
           PP E AAVL VEAAREHVLVEA   S+DW CKNLE+ME+SCGGDG VAWKK+RRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120

Query: 121 GVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLA 180
           G  AEENWVALS+GPLRPG+LSSKEEAELCLCLKEAAQ+E+ KTRIMETQ+HEPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKIKTRIMETQDHEPTNKQLA 180

Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
           IA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQ II+ALDK SRLVRLPG+MGQMVAR+AEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMV 360
           R PTHKEVA+ LKV VSTVRLVTERSKRPISINQP NDRGCLTLQEIMPGPDNLTPE+MV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATL 420
           +RKLMKQELKKLLNTLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRETIR+ N+ATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 SKLKKTDILDYLKDYLV 437
           +KLKK++ILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]
BLAST of CcUC10G197310 vs. ExPASy Swiss-Prot
Match: Q9ZSL6 (RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGD PE=2 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.3e-86
Identity = 193/435 (44.37%), Postives = 271/435 (62.30%), Query Frame = 0 

Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATT    +  T  P+ P  ++S L    TH  Q       PFS KL +  +  DT T+ 
Sbjct: 1   MATTIPTTATATMCPSPPVPTISPL-LRTTHQCQPSPSLSSPFSIKLSTALVCGDT-TVD 60

Query: 61  PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
              +++V+        +  E  G   +   K   R          V +++   +  +  G
Sbjct: 61  RVVDSSVM--------IKPEKWGIQSEKRRKRRRRRR--------VGYERLEPEEEENAG 120

Query: 121 VKAEENWVALS-SGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLA 180
           V+AE   +++   G  R G+LS  EE +LCL LKE A+LE   T +   +E+E  +  LA
Sbjct: 121 VEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSV---EENEMVSVLLA 180

Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
              G K  S + ILCR +E+R+++ RCY +LV+SIA  YQGKGL+LQDL QEG+IGLL+G
Sbjct: 181 SGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLS 300
           AERF+P+RG+KLSTY YWWI+QAI+RA+   SRLV+LPG M ++ A++AEA+N L  KL 
Sbjct: 241 AERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLR 300

Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMV 360
           R P+ +E+AE L ++VS VRL  ERS+ P+S+++  +  G +TLQEI+ GPD   PE MV
Sbjct: 301 RQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMV 360

Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATL 420
            R+ MK E+++LL +L+ RE+ +L LYFGLNGE P SFEEIGKSL LSRE +R+IN   L
Sbjct: 361 KREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIAL 414

Query: 421 SKLKKTDILDYLKDY 435
            KL+    ++ LK Y
Sbjct: 421 KKLRNVHNVNDLKIY 414

[Close]
BLAST of CcUC10G197310 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 7.7e-50
Identity = 115/340 (33.82%), Postives = 196/340 (57.65%), Query Frame = 0 

Query: 97  EESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPL-RPGYLSSKEEAELCLCLKEA 156
           E+S G D   A K K + R+        E+ + L    + R   L + EE EL   + + 
Sbjct: 65  EDSVGEDEDAAAKAKAKVRKTYT-----EDSIRLYLQEIGRIRLLRADEEIELARQIADL 124

Query: 157 AQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIA 216
             LER +  ++E  +  P++ + A A+ + L    R L R R ++D++++   +LV+SIA
Sbjct: 125 LALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIA 184

Query: 217 APYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVR 276
             Y  +GLS QDL QEG++GL++ AE+F+  +G+K STYA WWIRQAI RA+   SR +R
Sbjct: 185 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 244

Query: 277 LPGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPF 336
           LP ++ + ++R+ +    L  ++ R PT +E+A  +++ +  +R + + ++ PIS+  P 
Sbjct: 245 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 304

Query: 337 NDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQ 396
                  L + +   D  TPE  V + L++++L+ +L+TLS RE  +L L +GL+    +
Sbjct: 305 GKEEDSRLGDFIEA-DGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMK 364

Query: 397 SFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYL 436
           + EEIG+  N++RE IR+I    L KL+  +    LK+Y+
Sbjct: 365 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]
BLAST of CcUC10G197310 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.8e-49
Identity = 111/339 (32.74%), Postives = 194/339 (57.23%), Query Frame = 0 

Query: 97  EESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAA 156
           +E     G  A  ++R + +K+   +          G +R   L + EE EL   + +  
Sbjct: 54  DEDDAKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIR--LLRADEEIELARKIADLL 113

Query: 157 QLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAA 216
           +LER + R+ E  E +P + + A A+   L +    L   R ++D++++   +LV+SIA 
Sbjct: 114 ELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAK 173

Query: 217 PYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRL 276
            Y  +GLS QDL QEG++GL++ AE+F+  +G+K STYA WWIRQAI RA+   SR +RL
Sbjct: 174 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 233

Query: 277 PGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFN 336
           P ++ + ++R+ +    L  ++ R PT +E+A  +++ +  +R + + ++ PIS+  P  
Sbjct: 234 PVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIG 293

Query: 337 DRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQS 396
                 L + +   D  TPE  V + L++++L+K+L++LS RE  +L L +GL+    ++
Sbjct: 294 KEEDSRLGDFIES-DGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKT 353

Query: 397 FEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYL 436
            EEIG+  N++RE IR+I    L KL+  +    LK+Y+
Sbjct: 354 LEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]
BLAST of CcUC10G197310 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-47
Identity = 112/346 (32.37%), Postives = 196/346 (56.65%), Query Frame = 0 

Query: 91  KNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCL 150
           K LE+         T +  KK+R   +EV       ++ +++   +   L+ +EE EL  
Sbjct: 226 KGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSA 285

Query: 151 CLKEAAQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKL 210
            +++  +LER +T + E    +PT  Q A A G    S+ + +      +D++I+   +L
Sbjct: 286 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 345

Query: 211 VISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKN 270
           VISIA  YQG G++LQDL QEG  GL++GAE+F+  +G K STYA+WWI+QA+ ++L   
Sbjct: 346 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 405

Query: 271 SRLVRLPGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPIS 330
           SR++RLP +M +   R+ EA   L  +  + P ++E+AE+  + +  +  V    K P S
Sbjct: 406 SRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRS 465

Query: 331 INQPFNDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLN 390
           ++Q       L   E++  P+ +T E +++++ M+Q+L K+L++L  RE  ++   FG+ 
Sbjct: 466 LDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGME 525

Query: 391 GEIPQSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYLV 437
               ++ +EIG+ + +SRE +R+I  +   KLK     ++L+ YLV
Sbjct: 526 DGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]
BLAST of CcUC10G197310 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.0e-46
Identity = 110/322 (34.16%), Postives = 182/322 (56.52%), Query Frame = 0 

Query: 103 DGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAK 162
           +G V  K   +K+ K+ G   ++       GP     L++KEEAEL   ++   +LE+ K
Sbjct: 212 EGYVPQKTSAKKKYKQ-GADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVK 271

Query: 163 TRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKG 222
           T++      EPT  + A A+G     +   + R R SR++LI    +LV+ IA  YQ +G
Sbjct: 272 TKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRG 331

Query: 223 LSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQ 282
           L+ QDL QEG++GL+K  E+F+P  G + +TYAYWWIRQ+I +++ +NSR +RLP  +  
Sbjct: 332 LNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYM 391

Query: 283 MVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLT 342
           ++ +++EA      + +  P+ +E+A  + V    +  +   ++ P+S+ QP       T
Sbjct: 392 LLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTT 451

Query: 343 LQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGK 402
            QEI P     TP   V ++LM+  ++ LLN LS +E  I+ L FG++G   +S  EIG+
Sbjct: 452 FQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGE 511

Query: 403 SLNLSRETIRKINVATLSKLKK 425
              LS+E +R++    L +LK+
Sbjct: 512 IYGLSKERVRQLESRALYRLKQ 532

[Close]
BLAST of CcUC10G197310 vs. ExPASy TrEMBL
Match: A0A0A0L9T0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1)

HSP 1 Score: 791.6 bits (2043), Expect = 1.7e-225
Identity = 400/436 (91.74%), Postives = 415/436 (95.18%), Query Frame = 0 

Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLG N ISNDTLTLP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60

Query: 61  PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
           PPPEAAVL VEAA EHVLVEA+GFSEDWS KN+E+MEESC GDGTVAWKKKRRKRRKEVG
Sbjct: 61  PPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVG 120

Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAI 180
           VKAEENW+ALSSGPLRPGYLS KEEAELCLCLKEA  LE  KTRIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAI 180

Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
           A+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSR 300
           ERFEPNRGHKLSTYAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AE NNHLGIKLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300

Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVM 360
           PPT+KEVAESLKVH+ST+RLV ERSKRPISINQP NDR CLTLQEIMPGPDNLTPE+MVM
Sbjct: 301 PPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVM 360

Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLS 420
           RKLMKQELK+LLNTLSKREA ILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+ N+ATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKTD+LDYLKDYLV
Sbjct: 421 KLKKTDVLDYLKDYLV 436

[Close]
BLAST of CcUC10G197310 vs. ExPASy TrEMBL
Match: A0A5D3BP27 (RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00100 PE=3 SV=1)

HSP 1 Score: 786.6 bits (2030), Expect = 5.5e-224
Identity = 398/436 (91.28%), Postives = 417/436 (95.64%), Query Frame = 0 

Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLG NFIS DTLTLP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLP 60

Query: 61  PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
           PPPEAAVL VEAA EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVG
Sbjct: 61  PPPEAAVLAVEAAGEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVG 120

Query: 121 VKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAI 180
           VKAEENW+ALSSGPLRPGYLS KEEAELCLCLKEA  LE+ K+RIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAI 180

Query: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
           A+GTK G IDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKPGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSR 300
           ERFEP+RGHKLSTYAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AE NNHLGIKLSR
Sbjct: 241 ERFEPSRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300

Query: 301 PPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVM 360
           PPT++EVAESLKV VSTVRLV ERSKRPISINQP NDR CLTLQEI+PGPDNLTPE+MVM
Sbjct: 301 PPTNEEVAESLKVRVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVM 360

Query: 361 RKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLS 420
           RKLMKQELK+LLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+IN+ATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKT++LDY+KDYLV
Sbjct: 421 KLKKTNVLDYIKDYLV 436

[Close]
BLAST of CcUC10G197310 vs. ExPASy TrEMBL
Match: A0A1S3CFL7 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500331 PE=3 SV=1)

HSP 1 Score: 766.1 bits (1977), Expect = 7.6e-218
Identity = 386/423 (91.25%), Postives = 405/423 (95.74%), Query Frame = 0 

Query: 14  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLPPPPEAAVLGVEAA 73
           SPTLPSISLSSLPSLKTHLPQQPHFPFPPFS+KLG NFIS DTLTLPPPPEAAVL VEAA
Sbjct: 51  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLPPPPEAAVLAVEAA 110

Query: 74  REHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSG 133
            EHVLVEARGFSEDWS KN+ERMEESC GDGTVAWKKKRRKRRKEVGVKAEENW+ALSSG
Sbjct: 111 GEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSG 170

Query: 134 PLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRIL 193
           PLRPGYLS KEEAELCLCLKEA  LE+ K+RIMETQEHEPTNKQLAIA+GTK G IDRIL
Sbjct: 171 PLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAIAMGTKPGCIDRIL 230

Query: 194 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLST 253
           CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEP+RGHKLST
Sbjct: 231 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPSRGHKLST 290

Query: 254 YAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKV 313
           YAYWWIRQAIIRALDK SRLVRLPG+MGQMVAR+AE NNHLGIKLSRPPT++EVAESLKV
Sbjct: 291 YAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNEEVAESLKV 350

Query: 314 HVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLN 373
            VSTVRLV ERSKRPISINQP NDR CLTLQEI+PGPDNLTPE+MVMRKLMKQELK+LLN
Sbjct: 351 RVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVMRKLMKQELKRLLN 410

Query: 374 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKD 433
           TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIR+IN+ATLSKLKKT++LDY+KD
Sbjct: 411 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKD 470

Query: 434 YLV 437
           YLV
Sbjct: 471 YLV 473

[Close]
BLAST of CcUC10G197310 vs. ExPASy TrEMBL
Match: A0A6J1J3P0 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481519 PE=3 SV=1)

HSP 1 Score: 752.7 bits (1942), Expect = 8.7e-214
Identity = 383/437 (87.64%), Postives = 410/437 (93.82%), Query Frame = 0 

Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL  NFISNDTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60

Query: 61  PPPE-AAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEV 120
           PP E AAVL VEAAREHVLVEA   S+DW CKNLE+ME+SCGGDG VAWKK+RRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120

Query: 121 GVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLA 180
           G  AEENWVALSSGPLRPG+LSSKEEAELCLCLKEAAQ+E+ KTRIMETQ+HEPTNKQLA
Sbjct: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180

Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
           IA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQ II+ALDK SRLVRLPG+MGQMVAR+AEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMV 360
           R PTHKEVA+ LKV VSTVRLVTERSKRPISIN+P NDRGCLTLQEIMPGPDNLTPE+MV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATL 420
           +RKLMKQELK+LL+TLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRETIR+ N+ATL
Sbjct: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 SKLKKTDILDYLKDYLV 437
           +KLKK++ILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]
BLAST of CcUC10G197310 vs. ExPASy TrEMBL
Match: A0A6J1FAN3 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442316 PE=3 SV=1)

HSP 1 Score: 752.3 bits (1941), Expect = 1.1e-213
Identity = 383/437 (87.64%), Postives = 410/437 (93.82%), Query Frame = 0 

Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL  NFI+NDTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPPE-AAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEV 120
           PP E AAVL VEAAREHVLVEA   S+DWSCKNLE+ME+SCGG G VAWKK+RRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQSCGGAGNVAWKKRRRKRRKEV 120

Query: 121 GVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLA 180
           G  AEENWVALS+GPLRPG+LSSKEEAELCLCLKEAAQ+E+ KTRIMETQEHEPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKIKTRIMETQEHEPTNKQLA 180

Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
           IA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQ II+ALDK SRLVRLPG+MGQMVA++AEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVAKIAEANNHLGIKLS 300

Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMV 360
           R PTHKEVA+ LKV VSTVRLVTER+KRPISINQP NDRGCLTLQEIMPGPDNLTPE+MV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERNKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATL 420
           +RKLMKQELKKLLNTLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRETIR+ N+ATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 SKLKKTDILDYLKDYLV 437
           +KLKK++ILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]
BLAST of CcUC10G197310 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 321.6 bits (823), Expect = 9.6e-88
Identity = 193/435 (44.37%), Postives = 271/435 (62.30%), Query Frame = 0 

Query: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGSNFISNDTLTLP 60
           MATT    +  T  P+ P  ++S L    TH  Q       PFS KL +  +  DT T+ 
Sbjct: 1   MATTIPTTATATMCPSPPVPTISPL-LRTTHQCQPSPSLSSPFSIKLSTALVCGDT-TVD 60

Query: 61  PPPEAAVLGVEAAREHVLVEARGFSEDWSCKNLERMEESCGGDGTVAWKKKRRKRRKEVG 120
              +++V+        +  E  G   +   K   R          V +++   +  +  G
Sbjct: 61  RVVDSSVM--------IKPEKWGIQSEKRRKRRRRRR--------VGYERLEPEEEENAG 120

Query: 121 VKAEENWVALS-SGPLRPGYLSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLA 180
           V+AE   +++   G  R G+LS  EE +LCL LKE A+LE   T +   +E+E  +  LA
Sbjct: 121 VEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSV---EENEMVSVLLA 180

Query: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240
              G K  S + ILCR +E+R+++ RCY +LV+SIA  YQGKGL+LQDL QEG+IGLL+G
Sbjct: 181 SGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHLGIKLS 300
           AERF+P+RG+KLSTY YWWI+QAI+RA+   SRLV+LPG M ++ A++AEA+N L  KL 
Sbjct: 241 AERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLR 300

Query: 301 RPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMV 360
           R P+ +E+AE L ++VS VRL  ERS+ P+S+++  +  G +TLQEI+ GPD   PE MV
Sbjct: 301 RQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMV 360

Query: 361 MRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATL 420
            R+ MK E+++LL +L+ RE+ +L LYFGLNGE P SFEEIGKSL LSRE +R+IN   L
Sbjct: 361 KREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIAL 414

Query: 421 SKLKKTDILDYLKDY 435
            KL+    ++ LK Y
Sbjct: 421 KKLRNVHNVNDLKIY 414

[Close]
BLAST of CcUC10G197310 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-48
Identity = 112/346 (32.37%), Postives = 196/346 (56.65%), Query Frame = 0 

Query: 91  KNLERMEESCGGDGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCL 150
           K LE+         T +  KK+R   +EV       ++ +++   +   L+ +EE EL  
Sbjct: 226 KGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSA 285

Query: 151 CLKEAAQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKL 210
            +++  +LER +T + E    +PT  Q A A G    S+ + +      +D++I+   +L
Sbjct: 286 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 345

Query: 211 VISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKN 270
           VISIA  YQG G++LQDL QEG  GL++GAE+F+  +G K STYA+WWI+QA+ ++L   
Sbjct: 346 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 405

Query: 271 SRLVRLPGYMGQMVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPIS 330
           SR++RLP +M +   R+ EA   L  +  + P ++E+AE+  + +  +  V    K P S
Sbjct: 406 SRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRS 465

Query: 331 INQPFNDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLN 390
           ++Q       L   E++  P+ +T E +++++ M+Q+L K+L++L  RE  ++   FG+ 
Sbjct: 466 LDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGME 525

Query: 391 GEIPQSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYLV 437
               ++ +EIG+ + +SRE +R+I  +   KLK     ++L+ YLV
Sbjct: 526 DGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]
BLAST of CcUC10G197310 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 187.6 bits (475), Expect = 2.2e-47
Identity = 110/322 (34.16%), Postives = 182/322 (56.52%), Query Frame = 0 

Query: 103 DGTVAWKKKRRKRRKEVGVKAEENWVALSSGPLRPGYLSSKEEAELCLCLKEAAQLERAK 162
           +G V  K   +K+ K+ G   ++       GP     L++KEEAEL   ++   +LE+ K
Sbjct: 212 EGYVPQKTSAKKKYKQ-GADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVK 271

Query: 163 TRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKG 222
           T++      EPT  + A A+G     +   + R R SR++LI    +LV+ IA  YQ +G
Sbjct: 272 TKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRG 331

Query: 223 LSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQ 282
           L+ QDL QEG++GL+K  E+F+P  G + +TYAYWWIRQ+I +++ +NSR +RLP  +  
Sbjct: 332 LNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYM 391

Query: 283 MVARLAEANNHLGIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLT 342
           ++ +++EA      + +  P+ +E+A  + V    +  +   ++ P+S+ QP       T
Sbjct: 392 LLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTT 451

Query: 343 LQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSKREAHILSLYFGLNGEIPQSFEEIGK 402
            QEI P     TP   V ++LM+  ++ LLN LS +E  I+ L FG++G   +S  EIG+
Sbjct: 452 FQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGE 511

Query: 403 SLNLSRETIRKINVATLSKLKK 425
              LS+E +R++    L +LK+
Sbjct: 512 IYGLSKERVRQLESRALYRLKQ 532

[Close]
BLAST of CcUC10G197310 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 149.4 bits (376), Expect = 6.5e-36
Identity = 114/380 (30.00%), Postives = 184/380 (48.42%), Query Frame = 0 

Query: 77  VLVEARGFSEDWSCKNLERMEESCGGDGTVAWKK-------KRRKRRKEVGVKAEENWV- 136
           +L++     + W+    + +     G GT+  KK           R++ +G K + N   
Sbjct: 115 LLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTH 174

Query: 137 -----ALSSGPLRPGY---------LSSKEEAELCLCLKEAAQLERAKTRIMETQEHEPT 196
                 +SSG    GY         LS  E   L   +K   +L+  K+R+ +    EP+
Sbjct: 175 VKAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPS 234

Query: 197 NKQLAIALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNI 256
           ++QLA++L      +   L     +R++L     +LV+SIA  Y   G  + DL Q G I
Sbjct: 235 DEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLI 294

Query: 257 GLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKNSRLVRLPGYMGQMVARLAEANNHL 316
           GLL+G E+F+ ++G ++STY YWWIRQ + RAL  NSR +RLP ++ + +  +  A   L
Sbjct: 295 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL 354

Query: 317 GIKLSRPPTHKEVAESLKVHVSTVRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLT 376
             K    P+   +AESL +    VR  TE   +  S+     DR        +PG  + +
Sbjct: 355 QEK-GITPSIDRIAESLNMSQKKVRNATEAVSKVFSL-----DRDAFPSLNGLPGETHHS 414

Query: 377 ----------PESMVMRKLMKQELKKLLN-TLSKREAHILSLYFGLNGEIPQSFEEIGKS 424
                     P        +K+E+ KL++ TL +RE  I+ LY+GL+ E   ++E+I K 
Sbjct: 415 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKR 474

[Close]
BLAST of CcUC10G197310 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 137.9 bits (346), Expect = 2.0e-32
Identity = 93/298 (31.21%), Postives = 154/298 (51.68%), Query Frame = 0 

Query: 142 SKEEAELCLCLKEAAQLERAKTRIMETQEHEPTNKQLAIALGTKLGSIDRILCRARESRD 201
           S+ E E+   +K  A +ER +T++ E      +    A A G     + R L      RD
Sbjct: 275 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRD 334

Query: 202 RLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQ 261
            L++    LV+ +A  Y+G G++ +DL Q G +G+L+GAERF+  RG+K STY  +WIR+
Sbjct: 335 ELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRK 394

Query: 262 AIIRALDKNSRLVRLPGYMGQMVARLAEANNHL----GIKLSRPPTHKEVAESLKVHVST 321
           ++   + +++R V +P  + + +  + +A   L    GIK +     +E+A+     V  
Sbjct: 395 SMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYA---ADEEIAKLTGHSVKK 454

Query: 322 VRLVTERSKRPISINQPFNDRGCLTLQEIMPGPDNLTPESMVMRKLMKQELKKLLNTLSK 381
           +R   +  K   SI++   D       E  P     +PE  VMR+  ++++  LL  L  
Sbjct: 455 IRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEP 514

Query: 382 REAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRKINVATLSKLKKTDILDYLKDYL 436
           RE  ++ L +GL    P+S EEIGK L +S+E IRKI    ++KL+     + L+ YL
Sbjct: 515 REKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569

The following BLAST results are available for this feature:
BLAST of CcUC10G197310 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906215.13.5e-23394.72RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida][more]
XP_004149725.13.5e-22591.74RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus] >KGN58573.1 hy... [more]
KAA0048391.11.1e-22391.28RNA polymerase sigma factor sigD [Cucumis melo var. makuwa] >TYJ99868.1 RNA poly... [more]
XP_008461821.11.6e-21791.25PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo][more]
XP_023528248.14.7e-21487.87RNA polymerase sigma factor sigD, chloroplastic [Cucurbita pepo subsp. pepo][more]
BLAST of CcUC10G197310 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZSL61.3e-8644.37RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
P380237.7e-5033.82RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ... [more]
P266833.8e-4932.74RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT... [more]
O220562.1e-4732.37RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV... [more]
Q9LD953.0e-4634.16RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of CcUC10G197310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9T01.7e-22591.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1[more]
A0A5D3BP275.5e-22491.28RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3CFL77.6e-21891.25RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1J3P08.7e-21487.64RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1FAN31.1e-21387.64RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of CcUC10G197310 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G13730.19.6e-8844.37sigma factor 4 [more]
AT1G08540.11.5e-4832.37RNApolymerase sigma subunit 2 [more]
AT2G36990.12.2e-4734.16RNApolymerase sigma-subunit F [more]
AT1G64860.16.5e-3630.00sigma factor A [more]
AT3G53920.12.0e-3231.21RNApolymerase sigma-subunit C [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 227..240
score: 58.71
coord: 396..411
score: 39.64
coord: 251..259
score: 74.91
coord: 375..387
score: 37.52
coord: 411..422
score: 41.99
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 199..424
e-value: 5.7E-31
score: 105.3
NoneNo IPR availableGENE3D1.10.601.10RNA Polymerase Primary Sigma Factorcoord: 104..275
e-value: 3.3E-36
score: 127.5
NoneNo IPR availablePANTHERPTHR30603:SF47RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTICcoord: 4..435
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 4..435
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 365..423
e-value: 4.65354E-7
score: 44.4026
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 371..424
e-value: 1.2E-11
score: 44.0
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 358..436
e-value: 7.2E-20
score: 72.4
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 276..351
e-value: 1.9E-7
score: 33.4
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 286..358
e-value: 6.2E-10
score: 39.0
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 203..272
e-value: 1.6E-20
score: 72.6
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 334..425
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 276..347
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 137..272

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC10G197310.1CcUC10G197310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071482 cellular response to light stimulus
biological_process GO:2000142 regulation of DNA-templated transcription, initiation
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding
molecular_function GO:0016987 sigma factor activity
molecular_function GO:0003700 DNA-binding transcription factor activity