CcUC09G173350 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC09G173350
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	MatK_N domain-containing protein
Location	CicolChr09: 9891081 .. 9892494 (-)
RNA-Seq Expression	CcUC09G173350
Synteny	CcUC09G173350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACATCTTTCAAAGTACGAAAAAAAAATACATAATTTTTTTAGGATTAAACAAAAGGATTCGCAAATAAAAGTGCTAATGCTACAACCAGTCCATAAATTGTTAAAGCTTCCATAAAAGCCAGACTAAGCAATAAAGTACCTCGGATTTTTCCCTCCGCCTCGGGTTGTCTCGCGATCCCTTCTACAGCTTGGCCCGCTGCAGTACCTTGACCAACCCCAGGTCCAATAGAAGCAAGCCCGACGGCCAACCCAGCAGCAATAACGGAAGCGGCAGAAATCAGTGGATTCATGATAAGTTCCTCACACTGATTAGAGTTACTTCGGAAACAAAAAAAGTAAAATAGATTTTTGTTATTCTATCAATTCCAATAAAATGCAACGAGATCTAGTATGAATTGGCGATCAGAACGTATATGGATAGAATTTATAAGAGGATCTCGAAAAATCAGCAATTTCTGCTGGGCCTTTATCCTTTTTTTAGGTTCATTAGGGTTTTTATTGGTTGGAACTTCCAGTTATCTTGGTAGGGATTTGATATCTTTATTTCCGTCTCAGCAAATAATTTTTTTTCCACAGGGGATCGTAATGTCTTTCTATGGGATTGCCGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGAAATAGTGTCTATTTTTCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTCCGATTCCTTATGAGCATTTATCGTCTGTCGCCCGGTCTGATTGAGGAGTAACTGTTTTTGCCTGAGAGTTCCTCTCCCTTCGATCGAGTTGGAGTCCGGAGCCAAACCCCCGGTCCGGAAGAAAGAAACCTTAACGTATCAGGGTCGTACGCCTGGAACATTCGTACAATTTCGGCGATTCTAAAAAGGAGTATATCCCTCTCCCTTAGTGTCTTTCCACTTCCCTCGTTCGGGAACAAACACTTCGCCCAATTCTTTTGAATCCCGGCCCGGTTTATCCCCACTAACCAATTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTGCCCGAGAATTGAGACAGTTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTGTTCCGATCGAAGGAATAGGGGACAAGGTGGTCGACGTTTTCAATACATTTAATTTGAATTGGCATTTTCTGCATCATAATTATCACCATAATTATTGTGTGAGGCCCTATCGATTAGTATTACGCAGAAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGTGGTGTATTTGGGACGGCTTTCTTGATTACAGCAACAATAACGTCACCAATACGAGCATATCGTCGAGTAGATTCTTCTTTTTGA

mRNA sequence

ATGAAACATCTTTCAAACTTGGCCCGCTGCAGTACCTTGACCAACCCCAGGTCCAATAGAAGCAAGCCCGACGGCCAACCCAGCAGCAATAACGGAAGCGGCAGAAATCAGTGGATTCATGATAAGTTCCTCACACTGATTAGAGTTACTTCGGAAACAAAAAAAAGTTCCTCTCCCTTCGATCGAGTTGGAGTCCGGAGCCAAACCCCCGGTCCGGAAGAAAGAAACCTTAACGTATCAGGGTCGTACGCCTGGAACATTCGTACAATTTCGGCGATTCTAAAAAGGAGTATATCCCTCTCCCTTATATTACGCAGAAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGTGGTGTATTTGGGACGGCTTTCTTGATTACAGCAACAATAACGTCACCAATACGAGCATATCGTCGAGTAGATTCTTCTTTTTGA

Coding sequence (CDS)

ATGAAACATCTTTCAAACTTGGCCCGCTGCAGTACCTTGACCAACCCCAGGTCCAATAGAAGCAAGCCCGACGGCCAACCCAGCAGCAATAACGGAAGCGGCAGAAATCAGTGGATTCATGATAAGTTCCTCACACTGATTAGAGTTACTTCGGAAACAAAAAAAAGTTCCTCTCCCTTCGATCGAGTTGGAGTCCGGAGCCAAACCCCCGGTCCGGAAGAAAGAAACCTTAACGTATCAGGGTCGTACGCCTGGAACATTCGTACAATTTCGGCGATTCTAAAAAGGAGTATATCCCTCTCCCTTATATTACGCAGAAGTTCTTTACAAGTACGTACAATTACAGCTCTGATCACTTCTGATCTTTCTAGTGGTGTATTTGGGACGGCTTTCTTGATTACAGCAACAATAACGTCACCAATACGAGCATATCGTCGAGTAGATTCTTCTTTTTGA

Protein sequence

MKHLSNLARCSTLTNPRSNRSKPDGQPSSNNGSGRNQWIHDKFLTLIRVTSETKKSSSPFDRVGVRSQTPGPEERNLNVSGSYAWNIRTISAILKRSISLSLILRRSSLQVRTITALITSDLSSGVFGTAFLITATITSPIRAYRRVDSSF

Homology

[Close]

BLAST of CcUC09G173350 vs. NCBI nr
Match: OMP13858.1 (hypothetical protein COLO4_00792 [Corchorus olitorius])

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-08
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 2  KHLSNLARCSTLTNPRSNRSKPDGQPSSNNGSGRNQWIHDKFL 45
          K  + LAR  TLTN RSNRSK D QPSSNNGSGRNQWIHDKFL
Sbjct: 7  KRKNRLARSCTLTNSRSNRSKSDSQPSSNNGSGRNQWIHDKFL 49

[Close]

BLAST of CcUC09G173350 vs. NCBI nr
Match: RYR67213.1 (hypothetical protein Ahy_A03g013514 isoform B [Arachis hypogaea])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 103 ILRRSSLQVRTITALITSDLSSGVFGTAFLITATITSPIRAYRRV 148
           +L  SSLQVRTITALITSDLS  +FGTA LITAT  SPI AYRR+
Sbjct: 15  LLHLSSLQVRTITALITSDLSKDIFGTASLITATTMSPIEAYRRL 59

[Close]

BLAST of CcUC09G173350 vs. NCBI nr
Match: RYR33854.1 (hypothetical protein Ahy_A10g048504 [Arachis hypogaea])

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-05
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 11  STLTNPRSNRSKPDGQPSSNNGSGRNQWIHDKFLT 46
           S L NPRSNRSKP  QPSSNNGS  NQWIHDKFL+
Sbjct: 102 SALANPRSNRSKPYSQPSSNNGSSSNQWIHDKFLS 136

[Close]

BLAST of CcUC09G173350 vs. NCBI nr
Match: KAF9617231.1 (hypothetical protein IFM89_035113 [Coptis chinensis])

HSP 1 Score: 55.8 bits (133), Expect = 3.6e-04
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 6  NLARCSTLTNPRSNRSKPDGQPSSNNGSGRNQWIH 41
          +LARCSTLTN  SNRS+P  QP+SNNGS RNQWIH
Sbjct: 17 SLARCSTLTNFGSNRSQPYDQPNSNNGSNRNQWIH 51

[Close]

BLAST of CcUC09G173350 vs. NCBI nr
Match: RHN59664.1 (hypothetical protein MtrunA17_Chr4g0015941 [Medicago truncatula])

HSP 1 Score: 54.7 bits (130), Expect = 8.1e-04
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 103 ILRRSSLQVRTITALITSDLSSGVFGTAFLITATITSPI 142
           +LR SSLQVRTITALITSDLS   FGTAFLITAT  SPI
Sbjct: 15  LLRFSSLQVRTITALITSDLSKDEFGTAFLITATTMSPI 53

[Close]

BLAST of CcUC09G173350 vs. ExPASy TrEMBL
Match: A0A1R3L3K0 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_00792 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-08
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 2  KHLSNLARCSTLTNPRSNRSKPDGQPSSNNGSGRNQWIHDKFL 45
          K  + LAR  TLTN RSNRSK D QPSSNNGSGRNQWIHDKFL
Sbjct: 7  KRKNRLARSCTLTNSRSNRSKSDSQPSSNNGSGRNQWIHDKFL 49

[Close]

BLAST of CcUC09G173350 vs. ExPASy TrEMBL
Match: A0A445DVL5 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g013514 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-06
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 103 ILRRSSLQVRTITALITSDLSSGVFGTAFLITATITSPIRAYRRV 148
           +L  SSLQVRTITALITSDLS  +FGTA LITAT  SPI AYRR+
Sbjct: 15  LLHLSSLQVRTITALITSDLSKDIFGTASLITATTMSPIEAYRRL 59

[Close]

BLAST of CcUC09G173350 vs. ExPASy TrEMBL
Match: A0A445B5A7 (MatK_N domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g048504 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 11  STLTNPRSNRSKPDGQPSSNNGSGRNQWIHDKFLT 46
           S L NPRSNRSKP  QPSSNNGS  NQWIHDKFL+
Sbjct: 102 SALANPRSNRSKPYSQPSSNNGSSSNQWIHDKFLS 136

[Close]

BLAST of CcUC09G173350 vs. ExPASy TrEMBL
Match: A0A396I5Z8 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0015941 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-04
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 103 ILRRSSLQVRTITALITSDLSSGVFGTAFLITATITSPI 142
           +LR SSLQVRTITALITSDLS   FGTAFLITAT  SPI
Sbjct: 15  LLRFSSLQVRTITALITSDLSKDEFGTAFLITATTMSPI 53

The following BLAST results are available for this feature:

BLAST of CcUC09G173350 vs. NCBI nr


Match Name	E-value	Identity	Description
OMP13858.1	4.2e-08	79.07	hypothetical protein COLO4_00792 [Corchorus olitorius]	[more]
RYR67213.1	1.1e-05	75.56	hypothetical protein Ahy_A03g013514 isoform B [Arachis hypogaea]	[more]
RYR33854.1	3.3e-05	80.00	hypothetical protein Ahy_A10g048504 [Arachis hypogaea]	[more]
KAF9617231.1	3.6e-04	77.14	hypothetical protein IFM89_035113 [Coptis chinensis]	[more]
RHN59664.1	8.1e-04	82.05	hypothetical protein MtrunA17_Chr4g0015941 [Medicago truncatula]	[more]

BLAST of CcUC09G173350 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC09G173350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3L3K0	2.0e-08	79.07	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_00792 PE=4 SV=1	[more]
A0A445DVL5	5.5e-06	75.56	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g013514 PE=4 SV=1	[more]
A0A445B5A7	1.6e-05	80.00	MatK_N domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g048504 P...	[more]
A0A396I5Z8	3.9e-04	82.05	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0015941 ...	[more]

BLAST of CcUC09G173350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC09G173350.1	CcUC09G173350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0009507	chloroplast